mRNA_H-paniculata_contig21372.5617.1 (mRNA) Halopteris paniculata Hal_grac_a_UBK monoicous

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_H-paniculata_contig21372.5617.1
Unique NamemRNA_H-paniculata_contig21372.5617.1
TypemRNA
OrganismHalopteris paniculata Hal_grac_a_UBK monoicous (Halopteris paniculata Hal_grac_a_UBK monoicous)
Homology
BLAST of mRNA_H-paniculata_contig21372.5617.1 vs. uniprot
Match: A0A6D2KTV0_9BRAS (Reverse transcriptase Ty1/copia-type domain-containing protein n=1 Tax=Microthlaspi erraticum TaxID=1685480 RepID=A0A6D2KTV0_9BRAS)

HSP 1 Score: 89.4 bits (220), Expect = 7.470e-19
Identity = 46/123 (37.40%), Postives = 73/123 (59.35%), Query Frame = 1
Query:    1 VYVDDLVIAGRRV-KVDEFKHSVRWRLRMDDLGSLSRVLGIEVRRNRPNGTISISQGGYIREVLIRYGFDKCRGVPTPVEGKVKILAPDGGRS---GNLSEYRGMVGSLMCPSTGTRPDIAYA 357
            +YVDD+++A + + +V++ K  +     M DLG+ SR+LGI++ RNR  GT+ +SQ GY+++V+ R+   + + V TP+    K+ +           L  Y   VGS+M    GTRPDIAYA
Sbjct:    9 LYVDDMLLAAKSITEVNKLKAELSREFEMKDLGAASRILGIDITRNRKEGTLCLSQSGYLKKVIQRFNMGEAKVVSTPIGAHFKLYSVQDDSECVDTELVPYNSAVGSIMYAMIGTRPDIAYA 131          
BLAST of mRNA_H-paniculata_contig21372.5617.1 vs. uniprot
Match: Q9XEB4_ARATH (Putative polyprotein n=1 Tax=Arabidopsis thaliana TaxID=3702 RepID=Q9XEB4_ARATH)

HSP 1 Score: 89.7 bits (221), Expect = 1.800e-18
Identity = 47/123 (38.21%), Postives = 72/123 (58.54%), Query Frame = 1
Query:    1 VYVDDLVIAGRRV-KVDEFKHSVRWRLRMDDLGSLSRVLGIEVRRNRPNGTISISQGGYIREVLIRYGFDKCRGVPTPVEGKVKILAP---DGGRSGNLSEYRGMVGSLMCPSTGTRPDIAYA 357
            VYVDD++IAG+ + +V++ K  +     M D+G+ SR+LGI++ RNR  GT+ +SQ  Y+ +V+ R+     +GV TP+    K+ A    D      +  Y   VGS+M    GTRPD+ YA
Sbjct:  683 VYVDDMLIAGKSMAEVNKVKEGLSLNFEMKDMGAASRILGIDIERNREEGTLCLSQSKYLEKVIQRFRMADAKGVSTPIGAHFKLSAVRNNDESVDTEVCPYSSAVGSVMYAMIGTRPDVVYA 805          
BLAST of mRNA_H-paniculata_contig21372.5617.1 vs. uniprot
Match: A0A6D2J0E6_9BRAS (Uncharacterized protein n=3 Tax=Microthlaspi erraticum TaxID=1685480 RepID=A0A6D2J0E6_9BRAS)

HSP 1 Score: 89.4 bits (220), Expect = 2.510e-18
Identity = 46/123 (37.40%), Postives = 73/123 (59.35%), Query Frame = 1
Query:    1 VYVDDLVIAGRRV-KVDEFKHSVRWRLRMDDLGSLSRVLGIEVRRNRPNGTISISQGGYIREVLIRYGFDKCRGVPTPVEGKVKILAPDGGRS---GNLSEYRGMVGSLMCPSTGTRPDIAYA 357
            +YVDD+++A + + +V++ K  +     M DLG+ SR+LGI++ RNR  GT+ +SQ GY+++V+ R+   + + V TP+    K+ +           L  Y   VGS+M    GTRPDIAYA
Sbjct: 1034 LYVDDMLLAAKSITEVNKLKAELSREFEMKDLGAASRILGIDITRNRKEGTLCLSQSGYLKKVIQRFNMGEAKVVSTPIGAHFKLYSVQDDSECVDTELVPYNSAVGSIMYAMIGTRPDIAYA 1156          
BLAST of mRNA_H-paniculata_contig21372.5617.1 vs. uniprot
Match: A0A2U1QJ52_ARTAN (Uncharacterized protein n=1 Tax=Artemisia annua TaxID=35608 RepID=A0A2U1QJ52_ARTAN)

HSP 1 Score: 89.0 bits (219), Expect = 3.380e-18
Identity = 52/120 (43.33%), Postives = 72/120 (60.00%), Query Frame = 1
Query:    1 VYVDDLVIAGR-RVKVDEFKHSVRWRLRMDDLGSLSRVLGIEVRRNRPNGTISISQGGYIREVLIRYGFDKCRGVPTPVEGKVKILAPDGGRSGNLSEYRGMVGSLMCPSTGTRPDIAYA 357
            +YVDDL+  G  +  +DE K S+     M D+G +S  LGIEV++      I ISQ GY +E+L R+G DKC  V TP+E K K    DGG + + + ++ +VGSL    T TRPDI +A
Sbjct:  760 LYVDDLIFTGNSQSMIDELKKSMTGEFEMTDIGLMSYYLGIEVKQTDEG--IFISQEGYAKEILKRFGMDKCNPVGTPIEHKAKPSKHDGGEAVDSTLFKSLVGSLRY-LTCTRPDILFA 876          
BLAST of mRNA_H-paniculata_contig21372.5617.1 vs. uniprot
Match: Q9LVY5_ARATH (Copia-like retroelement pol polyprotein n=1 Tax=Arabidopsis thaliana TaxID=3702 RepID=Q9LVY5_ARATH)

HSP 1 Score: 88.6 bits (218), Expect = 4.630e-18
Identity = 46/122 (37.70%), Postives = 72/122 (59.02%), Query Frame = 1
Query:    4 YVDDLVIAGRRV-KVDEFKHSVRWRLRMDDLGSLSRVLGIEVRRNRPNGTISISQGGYIREVLIRYGFDKCRGVPTPVEGKVKILAP---DGGRSGNLSEYRGMVGSLMCPSTGTRPDIAYA 357
            YVDD++IAG+ + +V++ K  +     M D+G+ SR+LGI++ RNR  GT+ +SQ  Y+ +V+ R+     +GV TP+    K+ A    D      +  Y  +VGS+M    G RPD+AYA
Sbjct:  939 YVDDMLIAGKSMAEVNKVKEGLSLHFEMKDMGAASRILGIDIERNREEGTLCLSQSKYLEKVIQRFRMADAKGVSTPIGAHFKLSAVRNNDESVDTEVCPYSSVVGSVMYAMIGNRPDVAYA 1060          
BLAST of mRNA_H-paniculata_contig21372.5617.1 vs. uniprot
Match: A0A1J3F7G4_NOCCA (Retrovirus-related Pol polyprotein from transposon TNT 1-94 n=1 Tax=Noccaea caerulescens TaxID=107243 RepID=A0A1J3F7G4_NOCCA)

HSP 1 Score: 85.5 bits (210), Expect = 5.610e-17
Identity = 46/128 (35.94%), Postives = 74/128 (57.81%), Query Frame = 1
Query:    1 VYVDDLVIAGRRV-KVDEFKHSVRWRLRMDDLGSLSRVLGIEVRRNRPNGTISISQGGYIREVLIRYGFDKCRGVPTPVEGKVKILAPDGGRSGNLSE--------YRGMVGSLMCPSTGTRPDIAYA 357
            +YVDD++IA + + ++D  K ++     M D+G+ SR+LGI+++R+R  G + +SQ  Y+ +V+ R+   + + V TP+ G  K+ A        +SE        Y   VGS+M    GTRPDIAYA
Sbjct: 1035 LYVDDMLIAAKEMAEIDRLKSALSSEFEMKDMGAASRILGIDIKRDRKEGVLYLSQSSYLEKVVKRFNMGEAKSVNTPIGGHFKLSAVK-----EVSECIDTEKYPYSSAVGSVMYAMIGTRPDIAYA 1157          
BLAST of mRNA_H-paniculata_contig21372.5617.1 vs. uniprot
Match: A0A0C9VSW1_SPHS4 (Reverse transcriptase Ty1/copia-type domain-containing protein n=1 Tax=Sphaerobolus stellatus (strain SS14) TaxID=990650 RepID=A0A0C9VSW1_SPHS4)

HSP 1 Score: 85.1 bits (209), Expect = 7.330e-17
Identity = 46/120 (38.33%), Postives = 69/120 (57.50%), Query Frame = 1
Query:    1 VYVDDLVIAGRRVK-VDEFKHSVRWRLRMDDLGSLSRVLGIEVRRNRPNGTISISQGGYIREVLIRYGFDKCRGVPTPVEGKVKILAPDGGRSGNLSEYRGMVGSLMCPSTGTRPDIAYA 357
            VYVDDL+I    ++ V + K  ++ +  M DLG    +LG+E+ R+RP+ T+SISQ  Y  E+L R+G   C+  PTP+E  V +         +   Y+  VGSLM    GT PD+A++
Sbjct:  397 VYVDDLLIFSSSIEAVKKVKKDLKGKFEMTDLGEAHWILGMEITRDRPSHTLSISQKAYFAEILERFGMSDCKPAPTPMEVGVSLRKLSEAEV-DSQHYQSAVGSLMYGMIGTHPDVAHS 515          
BLAST of mRNA_H-paniculata_contig21372.5617.1 vs. uniprot
Match: A0A293MM55_ORNER (Reverse transcriptase, gag, polyprotein (Fragment) n=1 Tax=Ornithodoros erraticus TaxID=265619 RepID=A0A293MM55_ORNER)

HSP 1 Score: 84.0 bits (206), Expect = 1.940e-16
Identity = 50/122 (40.98%), Postives = 71/122 (58.20%), Query Frame = 1
Query:    1 VYVDD-LVIAGRRVKVDEFKHSVRWRLRMDDLGSLSRVLGIEVRRNRPNGTISISQGGYIREVLIRYGFDKCRGVPTPVEGKVKILAPDGGRSGNLS--EYRGMVGSLMCPSTGTRPDIAYA 357
            VYVDD L++A     +     ++  ++ + DLG    +LG+EV+R++  GTISISQ  YI EVL RYG + C+ V TP+E  +        R   L    Y+ ++GSLM    GTRPDIA+A
Sbjct: 1025 VYVDDMLMVATSERALRNAIQALGEKIELKDLGEPKYILGLEVKRDKTQGTISISQKKYIGEVLKRYGMENCKPVSTPIEPGLTQEESTSQREEQLQGIPYQSLIGSLMYLVQGTRPDIAFA 1146          
BLAST of mRNA_H-paniculata_contig21372.5617.1 vs. uniprot
Match: A0A535F6U2_9CHLR (DDE-type integrase/transposase/recombinase n=1 Tax=Chloroflexi bacterium TaxID=2026724 RepID=A0A535F6U2_9CHLR)

HSP 1 Score: 84.0 bits (206), Expect = 1.950e-16
Identity = 46/120 (38.33%), Postives = 71/120 (59.17%), Query Frame = 1
Query:    1 VYVDDLVIAGRRVK-VDEFKHSVRWRLRMDDLGSLSRVLGIEVRRNRPNGTISISQGGYIREVLIRYGFDKCRGVPTPVEGKVKILAPDGGRSGNLSEYRGMVGSLMCPSTGTRPDIAYA 357
            ++VDDL+I G+  + +   K  +     M DLG L   LG+ + R+  NG+ISI Q GYIR++L R+G +  + V TP+    +++   G    N+ +Y+ MVGSLM     +RPD+AYA
Sbjct: 1090 IWVDDLLIVGKNGRDIANVKGQLAGEFEMKDLGKLEYFLGMRIMRSL-NGSISIDQNGYIRQILERFGMEASKPVSTPIATGTRLVI--GETESNIKQYQAMVGSLMYAMLCSRPDLAYA 1206          
BLAST of mRNA_H-paniculata_contig21372.5617.1 vs. uniprot
Match: UPI0009715A83 (uncharacterized protein LOC109611240 n=1 Tax=Ooceraea biroi TaxID=2015173 RepID=UPI0009715A83)

HSP 1 Score: 82.0 bits (201), Expect = 4.430e-16
Identity = 48/120 (40.00%), Postives = 69/120 (57.50%), Query Frame = 1
Query:    4 YVDDLVIAGRR-VKVDEFKHSVRWRLRMDDLGSLSRVLGIEVRRNRPNGTISISQGGYIREVLIRYGFDKCRGVPTPVEGKVKILAPDGGRSGNLS-EYRGMVGSLMCPSTGTRPDIAYA 357
            YVDD++ A R    +   K  +  R  + DLG+    LGIE+ R+R    I +SQ GYIR+VL ++G   C+ V TP E  +K+   +   + N    YR ++GSLM  + GTRPDIA+A
Sbjct:   23 YVDDIIFASRNDTNIKRLKEELAKRFTIKDLGNARYCLGIEIDRDRKG--IHLSQSGYIRDVLKKFGMSDCKPVRTPFETGIKLHDNNDLDADNAQVSYRELIGSLMYLAQGTRPDIAHA 140          
The following BLAST results are available for this feature:
BLAST of mRNA_H-paniculata_contig21372.5617.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 vs UniRef90)
Total hits: 25
Match NameE-valueIdentityDescription
A0A6D2KTV0_9BRAS7.470e-1937.40Reverse transcriptase Ty1/copia-type domain-contai... [more]
Q9XEB4_ARATH1.800e-1838.21Putative polyprotein n=1 Tax=Arabidopsis thaliana ... [more]
A0A6D2J0E6_9BRAS2.510e-1837.40Uncharacterized protein n=3 Tax=Microthlaspi errat... [more]
A0A2U1QJ52_ARTAN3.380e-1843.33Uncharacterized protein n=1 Tax=Artemisia annua Ta... [more]
Q9LVY5_ARATH4.630e-1837.70Copia-like retroelement pol polyprotein n=1 Tax=Ar... [more]
A0A1J3F7G4_NOCCA5.610e-1735.94Retrovirus-related Pol polyprotein from transposon... [more]
A0A0C9VSW1_SPHS47.330e-1738.33Reverse transcriptase Ty1/copia-type domain-contai... [more]
A0A293MM55_ORNER1.940e-1640.98Reverse transcriptase, gag, polyprotein (Fragment)... [more]
A0A535F6U2_9CHLR1.950e-1638.33DDE-type integrase/transposase/recombinase n=1 Tax... [more]
UPI0009715A834.430e-1640.00uncharacterized protein LOC109611240 n=1 Tax=Oocer... [more]

Pages

back to top
Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
H-paniculata_contig21372contigH-paniculata_contig21372:3558..3990 +
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 vs UniRef902022-09-19
OGS1.0 of Halopteris paniculata Hal_grac_a_UBK monoicous2021-02-24
Properties
Property NameValue
Taxonomic scopeFungi
Seed ortholog score89.0
Seed ortholog evalue1.7e-15
Seed eggNOG ortholog698440.XP_007296447.1
Hectar predicted targeting categoryother localisation
GOsGO:0000943,GO:0003674,GO:0003676,GO:0003723,GO:0003824,GO:0003887,GO:0003964,GO:0004518,GO:0004540,GO:0005488,GO:0005575,GO:0005622,GO:0005623,GO:0005634,GO:0005737,GO:0006139,GO:0006259,GO:0006278,GO:0006508,GO:0006725,GO:0006807,GO:0008150,GO:0008152,GO:0008233,GO:0009058,GO:0009059,GO:0009987,GO:0016070,GO:0016740,GO:0016772,GO:0016779,GO:0016787,GO:0016788,GO:0018130,GO:0019438,GO:0019538,GO:0032196,GO:0032197,GO:0034061,GO:0034641,GO:0034645,GO:0034654,GO:0043170,GO:0043226,GO:0043227,GO:0043229,GO:0043231,GO:0044237,GO:0044238,GO:0044249,GO:0044260,GO:0044271,GO:0044422,GO:0044424,GO:0044428,GO:0044446,GO:0044464,GO:0046483,GO:0071704,GO:0071897,GO:0090304,GO:0090305,GO:0090501,GO:0097159,GO:0140096,GO:0140097,GO:0140098,GO:1901360,GO:1901362,GO:1901363,GO:1901564,GO:1901576
EggNOG free text desc.polyprotein is processed to make a nucleocapsid-like protein (Gag), reverse transcriptase (RT), protease (PR), and integrase (IN)
EggNOG OGs39YUU@33154,3P1DN@4751,3QRDY@4890,COG2801@1,KOG0017@2759
COG Functional cat.L
Best tax levelAscomycota
Best eggNOG OGNA|NA|NA
Exons2
Model size357
Cds size357
Stop0
Start0
Relationships

The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1622929574.5234497-CDS-H-paniculata_contig21372:3557..38201622929574.5234497-CDS-H-paniculata_contig21372:3557..3820Halopteris paniculata Hal_grac_a_UBK monoicousCDSH-paniculata_contig21372 3558..3820 +
1691480919.9867764-CDS-H-paniculata_contig21372:3557..38201691480919.9867764-CDS-H-paniculata_contig21372:3557..3820Halopteris paniculata Hal_grac_a_UBK monoicousCDSH-paniculata_contig21372 3558..3820 +
1622929574.5422392-CDS-H-paniculata_contig21372:3896..39901622929574.5422392-CDS-H-paniculata_contig21372:3896..3990Halopteris paniculata Hal_grac_a_UBK monoicousCDSH-paniculata_contig21372 3897..3990 +
1691480919.9983797-CDS-H-paniculata_contig21372:3896..39901691480919.9983797-CDS-H-paniculata_contig21372:3896..3990Halopteris paniculata Hal_grac_a_UBK monoicousCDSH-paniculata_contig21372 3897..3990 +


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_H-paniculata_contig21372.5617.1prot_H-paniculata_contig21372.5617.1Halopteris paniculata Hal_grac_a_UBK monoicouspolypeptideH-paniculata_contig21372 3558..3990 +


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_H-paniculata_contig21372.5617.1

>prot_H-paniculata_contig21372.5617.1 ID=prot_H-paniculata_contig21372.5617.1|Name=mRNA_H-paniculata_contig21372.5617.1|organism=Halopteris paniculata Hal_grac_a_UBK monoicous|type=polypeptide|length=119bp
VYVDDLVIAGRRVKVDEFKHSVRWRLRMDDLGSLSRVLGIEVRRNRPNGT
ISISQGGYIREVLIRYGFDKCRGVPTPVEGKVKILAPDGGRSGNLSEYRG
MVGSLMCPSTGTRPDIAYA
back to top

mRNA from alignment at H-paniculata_contig21372:3558..3990+

Legend: CDSpolypeptide
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_H-paniculata_contig21372.5617.1 ID=mRNA_H-paniculata_contig21372.5617.1|Name=mRNA_H-paniculata_contig21372.5617.1|organism=Halopteris paniculata Hal_grac_a_UBK monoicous|type=mRNA|length=433bp|location=Sequence derived from alignment at H-paniculata_contig21372:3558..3990+ (Halopteris paniculata Hal_grac_a_UBK monoicous)
GTCTATGTTGACGACCTGGTCATCGCTGGACGTCGTGTGAAAGTAGACGA GTTCAAGCACAGCGTACGTTGGCGTTTAAGGATGGACGACTTGGGCTCCC TCTCGCGCGTGTTGGGAATAGAAGTACGACGTAACCGCCCCAATGGTACC ATATCAATATCCCAAGGTGGCTACATCCGCGAGGTACTGATAAGATACGG TTTTGACAAGTGTCGAGGCGTGCCCACCCCTGTAGAGGGAAAAGTGAAGA TTTTGGCACCCGAGTCGGCCGACAAGGCCCCCGAATCAAACCCACTCGGG GCTATATGTCGGATATAAATCAGGAGTACACGAGAGCAGCGGTGGAAGAA GTGGTAATTTATCTGAATACAGAGGCATGGTAGGATCACTGATGTGCCCT TCGACAGGAACTAGACCTGATATAGCATACGCG
back to top

Coding sequence (CDS) from alignment at H-paniculata_contig21372:3558..3990+

>mRNA_H-paniculata_contig21372.5617.1 ID=mRNA_H-paniculata_contig21372.5617.1|Name=mRNA_H-paniculata_contig21372.5617.1|organism=Halopteris paniculata Hal_grac_a_UBK monoicous|type=CDS|length=714bp|location=Sequence derived from alignment at H-paniculata_contig21372:3558..3990+ (Halopteris paniculata Hal_grac_a_UBK monoicous)
GTCTATGTTGACGACCTGGTCATCGCTGGACGTCGTGTGAAAGTAGACGA
GTTCAAGCACAGCGTACGTTGGCGTTTAAGGATGGACGACTTGGGCTCCC
TCTCGCGCGTGTTGGGAATAGAAGTACGACGTAACCGCCCCAATGGTACC
ATATCAATATCCCAAGGTGGCTACATCCGCGAGGTACTGATAAGATACGG
TTTTGACAAGTGTCGAGGCGTGCCCACCCCTGTAGAGGGAAAAGTGAAGA
TTTTGGCACCCGAGTCTATGTTGACGACCTGGTCATCGCTGGACGTCGTG
TGAAAGTAGACGAGTTCAAGCACAGCGTACGTTGGCGTTTAAGGATGGAC
GACTTGGGCTCCCTCTCGCGCGTGTTGGGAATAGAAGTACGACGTAACCG
CCCCAATGGTACCATATCAATATCCCAAGGTGGCTACATCCGCGAGGTAC
TGATAAGATACGGTTTTGACAAGTGTCGAGGCGTGCCCACCCCTGTAGAG
GGAAAAGTGAAGATTTTGGCACCCGACGGTGGAAGAAGTGGTAATTTATC
TGAATACAGAGGCATGGTAGGATCACTGATGTGCCCTTCGACAGGAACTA
GACCTGATATAGCATACGCGCGGTGGAAGAAGTGGTAATTTATCTGAATA
CAGAGGCATGGTAGGATCACTGATGTGCCCTTCGACAGGAACTAGACCTG
ATATAGCATACGCG
back to top