mRNA_H-paniculata_contig21372.5617.1 (mRNA) Halopteris paniculata Hal_grac_a_UBK monoicous
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Overview
Homology
BLAST of mRNA_H-paniculata_contig21372.5617.1 vs. uniprot
Match: A0A6D2KTV0_9BRAS (Reverse transcriptase Ty1/copia-type domain-containing protein n=1 Tax=Microthlaspi erraticum TaxID=1685480 RepID=A0A6D2KTV0_9BRAS) HSP 1 Score: 89.4 bits (220), Expect = 7.470e-19 Identity = 46/123 (37.40%), Postives = 73/123 (59.35%), Query Frame = 1
Query: 1 VYVDDLVIAGRRV-KVDEFKHSVRWRLRMDDLGSLSRVLGIEVRRNRPNGTISISQGGYIREVLIRYGFDKCRGVPTPVEGKVKILAPDGGRS---GNLSEYRGMVGSLMCPSTGTRPDIAYA 357
+YVDD+++A + + +V++ K + M DLG+ SR+LGI++ RNR GT+ +SQ GY+++V+ R+ + + V TP+ K+ + L Y VGS+M GTRPDIAYA
Sbjct: 9 LYVDDMLLAAKSITEVNKLKAELSREFEMKDLGAASRILGIDITRNRKEGTLCLSQSGYLKKVIQRFNMGEAKVVSTPIGAHFKLYSVQDDSECVDTELVPYNSAVGSIMYAMIGTRPDIAYA 131
BLAST of mRNA_H-paniculata_contig21372.5617.1 vs. uniprot
Match: Q9XEB4_ARATH (Putative polyprotein n=1 Tax=Arabidopsis thaliana TaxID=3702 RepID=Q9XEB4_ARATH) HSP 1 Score: 89.7 bits (221), Expect = 1.800e-18 Identity = 47/123 (38.21%), Postives = 72/123 (58.54%), Query Frame = 1
Query: 1 VYVDDLVIAGRRV-KVDEFKHSVRWRLRMDDLGSLSRVLGIEVRRNRPNGTISISQGGYIREVLIRYGFDKCRGVPTPVEGKVKILAP---DGGRSGNLSEYRGMVGSLMCPSTGTRPDIAYA 357
VYVDD++IAG+ + +V++ K + M D+G+ SR+LGI++ RNR GT+ +SQ Y+ +V+ R+ +GV TP+ K+ A D + Y VGS+M GTRPD+ YA
Sbjct: 683 VYVDDMLIAGKSMAEVNKVKEGLSLNFEMKDMGAASRILGIDIERNREEGTLCLSQSKYLEKVIQRFRMADAKGVSTPIGAHFKLSAVRNNDESVDTEVCPYSSAVGSVMYAMIGTRPDVVYA 805
BLAST of mRNA_H-paniculata_contig21372.5617.1 vs. uniprot
Match: A0A6D2J0E6_9BRAS (Uncharacterized protein n=3 Tax=Microthlaspi erraticum TaxID=1685480 RepID=A0A6D2J0E6_9BRAS) HSP 1 Score: 89.4 bits (220), Expect = 2.510e-18 Identity = 46/123 (37.40%), Postives = 73/123 (59.35%), Query Frame = 1
Query: 1 VYVDDLVIAGRRV-KVDEFKHSVRWRLRMDDLGSLSRVLGIEVRRNRPNGTISISQGGYIREVLIRYGFDKCRGVPTPVEGKVKILAPDGGRS---GNLSEYRGMVGSLMCPSTGTRPDIAYA 357
+YVDD+++A + + +V++ K + M DLG+ SR+LGI++ RNR GT+ +SQ GY+++V+ R+ + + V TP+ K+ + L Y VGS+M GTRPDIAYA
Sbjct: 1034 LYVDDMLLAAKSITEVNKLKAELSREFEMKDLGAASRILGIDITRNRKEGTLCLSQSGYLKKVIQRFNMGEAKVVSTPIGAHFKLYSVQDDSECVDTELVPYNSAVGSIMYAMIGTRPDIAYA 1156
BLAST of mRNA_H-paniculata_contig21372.5617.1 vs. uniprot
Match: A0A2U1QJ52_ARTAN (Uncharacterized protein n=1 Tax=Artemisia annua TaxID=35608 RepID=A0A2U1QJ52_ARTAN) HSP 1 Score: 89.0 bits (219), Expect = 3.380e-18 Identity = 52/120 (43.33%), Postives = 72/120 (60.00%), Query Frame = 1
Query: 1 VYVDDLVIAGR-RVKVDEFKHSVRWRLRMDDLGSLSRVLGIEVRRNRPNGTISISQGGYIREVLIRYGFDKCRGVPTPVEGKVKILAPDGGRSGNLSEYRGMVGSLMCPSTGTRPDIAYA 357
+YVDDL+ G + +DE K S+ M D+G +S LGIEV++ I ISQ GY +E+L R+G DKC V TP+E K K DGG + + + ++ +VGSL T TRPDI +A
Sbjct: 760 LYVDDLIFTGNSQSMIDELKKSMTGEFEMTDIGLMSYYLGIEVKQTDEG--IFISQEGYAKEILKRFGMDKCNPVGTPIEHKAKPSKHDGGEAVDSTLFKSLVGSLRY-LTCTRPDILFA 876
BLAST of mRNA_H-paniculata_contig21372.5617.1 vs. uniprot
Match: Q9LVY5_ARATH (Copia-like retroelement pol polyprotein n=1 Tax=Arabidopsis thaliana TaxID=3702 RepID=Q9LVY5_ARATH) HSP 1 Score: 88.6 bits (218), Expect = 4.630e-18 Identity = 46/122 (37.70%), Postives = 72/122 (59.02%), Query Frame = 1
Query: 4 YVDDLVIAGRRV-KVDEFKHSVRWRLRMDDLGSLSRVLGIEVRRNRPNGTISISQGGYIREVLIRYGFDKCRGVPTPVEGKVKILAP---DGGRSGNLSEYRGMVGSLMCPSTGTRPDIAYA 357
YVDD++IAG+ + +V++ K + M D+G+ SR+LGI++ RNR GT+ +SQ Y+ +V+ R+ +GV TP+ K+ A D + Y +VGS+M G RPD+AYA
Sbjct: 939 YVDDMLIAGKSMAEVNKVKEGLSLHFEMKDMGAASRILGIDIERNREEGTLCLSQSKYLEKVIQRFRMADAKGVSTPIGAHFKLSAVRNNDESVDTEVCPYSSVVGSVMYAMIGNRPDVAYA 1060
BLAST of mRNA_H-paniculata_contig21372.5617.1 vs. uniprot
Match: A0A1J3F7G4_NOCCA (Retrovirus-related Pol polyprotein from transposon TNT 1-94 n=1 Tax=Noccaea caerulescens TaxID=107243 RepID=A0A1J3F7G4_NOCCA) HSP 1 Score: 85.5 bits (210), Expect = 5.610e-17 Identity = 46/128 (35.94%), Postives = 74/128 (57.81%), Query Frame = 1
Query: 1 VYVDDLVIAGRRV-KVDEFKHSVRWRLRMDDLGSLSRVLGIEVRRNRPNGTISISQGGYIREVLIRYGFDKCRGVPTPVEGKVKILAPDGGRSGNLSE--------YRGMVGSLMCPSTGTRPDIAYA 357
+YVDD++IA + + ++D K ++ M D+G+ SR+LGI+++R+R G + +SQ Y+ +V+ R+ + + V TP+ G K+ A +SE Y VGS+M GTRPDIAYA
Sbjct: 1035 LYVDDMLIAAKEMAEIDRLKSALSSEFEMKDMGAASRILGIDIKRDRKEGVLYLSQSSYLEKVVKRFNMGEAKSVNTPIGGHFKLSAVK-----EVSECIDTEKYPYSSAVGSVMYAMIGTRPDIAYA 1157
BLAST of mRNA_H-paniculata_contig21372.5617.1 vs. uniprot
Match: A0A0C9VSW1_SPHS4 (Reverse transcriptase Ty1/copia-type domain-containing protein n=1 Tax=Sphaerobolus stellatus (strain SS14) TaxID=990650 RepID=A0A0C9VSW1_SPHS4) HSP 1 Score: 85.1 bits (209), Expect = 7.330e-17 Identity = 46/120 (38.33%), Postives = 69/120 (57.50%), Query Frame = 1
Query: 1 VYVDDLVIAGRRVK-VDEFKHSVRWRLRMDDLGSLSRVLGIEVRRNRPNGTISISQGGYIREVLIRYGFDKCRGVPTPVEGKVKILAPDGGRSGNLSEYRGMVGSLMCPSTGTRPDIAYA 357
VYVDDL+I ++ V + K ++ + M DLG +LG+E+ R+RP+ T+SISQ Y E+L R+G C+ PTP+E V + + Y+ VGSLM GT PD+A++
Sbjct: 397 VYVDDLLIFSSSIEAVKKVKKDLKGKFEMTDLGEAHWILGMEITRDRPSHTLSISQKAYFAEILERFGMSDCKPAPTPMEVGVSLRKLSEAEV-DSQHYQSAVGSLMYGMIGTHPDVAHS 515
BLAST of mRNA_H-paniculata_contig21372.5617.1 vs. uniprot
Match: A0A293MM55_ORNER (Reverse transcriptase, gag, polyprotein (Fragment) n=1 Tax=Ornithodoros erraticus TaxID=265619 RepID=A0A293MM55_ORNER) HSP 1 Score: 84.0 bits (206), Expect = 1.940e-16 Identity = 50/122 (40.98%), Postives = 71/122 (58.20%), Query Frame = 1
Query: 1 VYVDD-LVIAGRRVKVDEFKHSVRWRLRMDDLGSLSRVLGIEVRRNRPNGTISISQGGYIREVLIRYGFDKCRGVPTPVEGKVKILAPDGGRSGNLS--EYRGMVGSLMCPSTGTRPDIAYA 357
VYVDD L++A + ++ ++ + DLG +LG+EV+R++ GTISISQ YI EVL RYG + C+ V TP+E + R L Y+ ++GSLM GTRPDIA+A
Sbjct: 1025 VYVDDMLMVATSERALRNAIQALGEKIELKDLGEPKYILGLEVKRDKTQGTISISQKKYIGEVLKRYGMENCKPVSTPIEPGLTQEESTSQREEQLQGIPYQSLIGSLMYLVQGTRPDIAFA 1146
BLAST of mRNA_H-paniculata_contig21372.5617.1 vs. uniprot
Match: A0A535F6U2_9CHLR (DDE-type integrase/transposase/recombinase n=1 Tax=Chloroflexi bacterium TaxID=2026724 RepID=A0A535F6U2_9CHLR) HSP 1 Score: 84.0 bits (206), Expect = 1.950e-16 Identity = 46/120 (38.33%), Postives = 71/120 (59.17%), Query Frame = 1
Query: 1 VYVDDLVIAGRRVK-VDEFKHSVRWRLRMDDLGSLSRVLGIEVRRNRPNGTISISQGGYIREVLIRYGFDKCRGVPTPVEGKVKILAPDGGRSGNLSEYRGMVGSLMCPSTGTRPDIAYA 357
++VDDL+I G+ + + K + M DLG L LG+ + R+ NG+ISI Q GYIR++L R+G + + V TP+ +++ G N+ +Y+ MVGSLM +RPD+AYA
Sbjct: 1090 IWVDDLLIVGKNGRDIANVKGQLAGEFEMKDLGKLEYFLGMRIMRSL-NGSISIDQNGYIRQILERFGMEASKPVSTPIATGTRLVI--GETESNIKQYQAMVGSLMYAMLCSRPDLAYA 1206
BLAST of mRNA_H-paniculata_contig21372.5617.1 vs. uniprot
Match: UPI0009715A83 (uncharacterized protein LOC109611240 n=1 Tax=Ooceraea biroi TaxID=2015173 RepID=UPI0009715A83) HSP 1 Score: 82.0 bits (201), Expect = 4.430e-16 Identity = 48/120 (40.00%), Postives = 69/120 (57.50%), Query Frame = 1
Query: 4 YVDDLVIAGRR-VKVDEFKHSVRWRLRMDDLGSLSRVLGIEVRRNRPNGTISISQGGYIREVLIRYGFDKCRGVPTPVEGKVKILAPDGGRSGNLS-EYRGMVGSLMCPSTGTRPDIAYA 357
YVDD++ A R + K + R + DLG+ LGIE+ R+R I +SQ GYIR+VL ++G C+ V TP E +K+ + + N YR ++GSLM + GTRPDIA+A
Sbjct: 23 YVDDIIFASRNDTNIKRLKEELAKRFTIKDLGNARYCLGIEIDRDRKG--IHLSQSGYIRDVLKKFGMSDCKPVRTPFETGIKLHDNNDLDADNAQVSYRELIGSLMYLAQGTRPDIAHA 140 The following BLAST results are available for this feature:
BLAST of mRNA_H-paniculata_contig21372.5617.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 vs UniRef90) Total hits: 25
Pagesback to topAlignments
The following features are aligned
Analyses
This mRNA is derived from or has results from the following analyses
Properties
Relationships
The following CDS feature(s) are a part of this mRNA:
The following polypeptide feature(s) derives from this mRNA:
Sequences
The following sequences are available for this feature:
protein sequence of mRNA_H-paniculata_contig21372.5617.1 >prot_H-paniculata_contig21372.5617.1 ID=prot_H-paniculata_contig21372.5617.1|Name=mRNA_H-paniculata_contig21372.5617.1|organism=Halopteris paniculata Hal_grac_a_UBK monoicous|type=polypeptide|length=119bp VYVDDLVIAGRRVKVDEFKHSVRWRLRMDDLGSLSRVLGIEVRRNRPNGTback to top mRNA from alignment at H-paniculata_contig21372:3558..3990+ Legend: CDSpolypeptide Hold the cursor over a type above to highlight its positions in the sequence below.>mRNA_H-paniculata_contig21372.5617.1 ID=mRNA_H-paniculata_contig21372.5617.1|Name=mRNA_H-paniculata_contig21372.5617.1|organism=Halopteris paniculata Hal_grac_a_UBK monoicous|type=mRNA|length=433bp|location=Sequence derived from alignment at H-paniculata_contig21372:3558..3990+ (Halopteris paniculata Hal_grac_a_UBK monoicous)back to top Coding sequence (CDS) from alignment at H-paniculata_contig21372:3558..3990+ >mRNA_H-paniculata_contig21372.5617.1 ID=mRNA_H-paniculata_contig21372.5617.1|Name=mRNA_H-paniculata_contig21372.5617.1|organism=Halopteris paniculata Hal_grac_a_UBK monoicous|type=CDS|length=714bp|location=Sequence derived from alignment at H-paniculata_contig21372:3558..3990+ (Halopteris paniculata Hal_grac_a_UBK monoicous)back to top |