mRNA_H-paniculata_contig2119.5549.1 (mRNA) Halopteris paniculata Hal_grac_a_UBK monoicous

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_H-paniculata_contig2119.5549.1
Unique NamemRNA_H-paniculata_contig2119.5549.1
TypemRNA
OrganismHalopteris paniculata Hal_grac_a_UBK monoicous (Halopteris paniculata Hal_grac_a_UBK monoicous)
Homology
[Close]
BLAST of mRNA_H-paniculata_contig2119.5549.1 vs. uniprot
Match: A0A8F0F877_9PHAE (Ribosomal protein L6 n=1 Tax=Protohalopteris sp. TaxID=2843287 RepID=A0A8F0F877_9PHAE)

HSP 1 Score: 318 bits (816), Expect = 1.760e-109
Identity = 160/178 (89.89%), Postives = 170/178 (95.51%), Query Frame = 1 
Query:    1 MSRIGKLPIIIPVNVQVEINQQTISISGPHGKLFKKISDLISVQVQNNTIYVTKNNNTRIANQLYGLTRTLINNMVIGVSKKFERILQLQGVGYRAQVTGNDLILNLGYSHPIIIMIPKGVDIKVEKNGEIYISGFDNELIGQLAATIRDKRPPEPYKGKGILYKGEIIKRKVGKSGK 534
            MSRIGKLPI+IP NVQVEI+++TISISGPHGKLFKKISDLISVQV NN IYVTKNNNTRIANQLYGLTRTLINNMVIGVS KFERILQLQGVGYRAQVTGNDLILNLGYSHPI I IPKG++I++EKNGEI ISGFD ELIGQLA+TIR+KRPPEPYKGKGILYKGEIIKRKVGKSGK
Sbjct:    1 MSRIGKLPIVIPANVQVEISERTISISGPHGKLFKKISDLISVQVNNNNIYVTKNNNTRIANQLYGLTRTLINNMVIGVSNKFERILQLQGVGYRAQVTGNDLILNLGYSHPIKITIPKGINIQIEKNGEIIISGFDKELIGQLASTIRNKRPPEPYKGKGILYKGEIIKRKVGKSGK 178
[Close]
BLAST of mRNA_H-paniculata_contig2119.5549.1 vs. uniprot
Match: A0A0R6MG01_UNDPI (50S ribosomal protein L6, chloroplastic n=25 Tax=Laminariales TaxID=2886 RepID=A0A0R6MG01_UNDPI)

HSP 1 Score: 287 bits (734), Expect = 5.520e-97
Identity = 141/178 (79.21%), Postives = 159/178 (89.33%), Query Frame = 1 
Query:    1 MSRIGKLPIIIPVNVQVEINQQTISISGPHGKLFKKISDLISVQVQNNTIYVTKNNNTRIANQLYGLTRTLINNMVIGVSKKFERILQLQGVGYRAQVTGNDLILNLGYSHPIIIMIPKGVDIKVEKNGEIYISGFDNELIGQLAATIRDKRPPEPYKGKGILYKGEIIKRKVGKSGK 534
            M RIGKLPI +P NVQVEINQ  I +SGPHGKLF+KISD+ISV++ +N IYV KN NTRIANQLYGL+RTLINNMV+GVS+KFER L+LQGVGYRAQ+ G DL+LNLGYSHPI+I IP G++IKVEKN  I I+GFDNEL+GQLAATIR KRPPEPYKGKGILYKGEIIKRKVGKSGK
Sbjct:    1 MGRIGKLPIKVPSNVQVEINQNNIEVSGPHGKLFRKISDVISVELSDNIIYVKKNENTRIANQLYGLSRTLINNMVVGVSQKFERTLELQGVGYRAQLKGKDLVLNLGYSHPILIAIPLGIEIKVEKNVGIIITGFDNELVGQLAATIRSKRPPEPYKGKGILYKGEIIKRKVGKSGK 178
[Close]
BLAST of mRNA_H-paniculata_contig2119.5549.1 vs. uniprot
Match: D1J738_ECTSI (50S ribosomal protein L6, chloroplastic n=3 Tax=Ectocarpales TaxID=2877 RepID=D1J738_ECTSI)

HSP 1 Score: 285 bits (728), Expect = 4.530e-96
Identity = 141/178 (79.21%), Postives = 160/178 (89.89%), Query Frame = 1 
Query:    1 MSRIGKLPIIIPVNVQVEINQQTISISGPHGKLFKKISDLISVQVQNNTIYVTKNNNTRIANQLYGLTRTLINNMVIGVSKKFERILQLQGVGYRAQVTGNDLILNLGYSHPIIIMIPKGVDIKVEKNGEIYISGFDNELIGQLAATIRDKRPPEPYKGKGILYKGEIIKRKVGKSGK 534
            M RIGKLPI +P NVQVEIN++ + +SGP GKLF+ ISDLISV++++N IYV+KN NTRIANQLYGLTRTLINNMVIGVS+KFER LQL+GVGYRAQ+ G DLILNLGYSHP++I IP G+DIKVEKN  I I+GFD ELIGQLAATIR+KRPPEPYKGKGILYKGEIIKRKVGKSGK
Sbjct:    1 MGRIGKLPIKVPSNVQVEINEKIVQVSGPQGKLFRTISDLISVELRDNKIYVSKNENTRIANQLYGLTRTLINNMVIGVSQKFERTLQLEGVGYRAQIKGKDLILNLGYSHPVLITIPLGIDIKVEKNIGIIITGFDKELIGQLAATIRNKRPPEPYKGKGILYKGEIIKRKVGKSGK 178
[Close]
BLAST of mRNA_H-paniculata_contig2119.5549.1 vs. uniprot
Match: A0A8F0F7U1_9PHAE (Ribosomal protein L6 n=2 Tax=Laminariales TaxID=2886 RepID=A0A8F0F7U1_9PHAE)

HSP 1 Score: 283 bits (724), Expect = 1.840e-95
Identity = 139/178 (78.09%), Postives = 158/178 (88.76%), Query Frame = 1 
Query:    1 MSRIGKLPIIIPVNVQVEINQQTISISGPHGKLFKKISDLISVQVQNNTIYVTKNNNTRIANQLYGLTRTLINNMVIGVSKKFERILQLQGVGYRAQVTGNDLILNLGYSHPIIIMIPKGVDIKVEKNGEIYISGFDNELIGQLAATIRDKRPPEPYKGKGILYKGEIIKRKVGKSGK 534
            M+RIGKLPI +P NVQVE+N++ I +SGPHGKLF+  SDLISV++ +N IYV K  NTRIANQLYGLTRTLINNMVIGVS+KFER LQLQGVGYRAQV G DL+LNLGYSHP++I IP+G+DIKVEKN  I I+GFD EL+GQLAATIR KRPPEPYKGKG+LYKGEIIKRKVGKSGK
Sbjct:    1 MARIGKLPIKVPSNVQVEVNKKNIKVSGPHGKLFRTFSDLISVELTDNIIYVKKMENTRIANQLYGLTRTLINNMVIGVSQKFERTLQLQGVGYRAQVQGKDLVLNLGYSHPVLISIPEGIDIKVEKNVGIIITGFDKELVGQLAATIRGKRPPEPYKGKGVLYKGEIIKRKVGKSGK 178
[Close]
BLAST of mRNA_H-paniculata_contig2119.5549.1 vs. uniprot
Match: A0A2R4QQ37_9PHAE (50S ribosomal protein L6 n=3 Tax=Fucaceae TaxID=3010 RepID=A0A2R4QQ37_9PHAE)

HSP 1 Score: 280 bits (715), Expect = 4.330e-94
Identity = 140/178 (78.65%), Postives = 158/178 (88.76%), Query Frame = 1 
Query:    1 MSRIGKLPIIIPVNVQVEINQQTISISGPHGKLFKKISDLISVQVQNNTIYVTKNNNTRIANQLYGLTRTLINNMVIGVSKKFERILQLQGVGYRAQVTGNDLILNLGYSHPIIIMIPKGVDIKVEKNGEIYISGFDNELIGQLAATIRDKRPPEPYKGKGILYKGEIIKRKVGKSGK 534
            MSRIGKLPI +P NVQVEIN+QTI ISGPHGKLF+KISDLI V+ Q + I +TK  NT+IANQLYGLTRTLINNM+IGVS+KFERILQLQGVGYRAQ+TGN+L+LNLGYSHPI I +P G++IKVEKN  I I+GFD EL+GQLAATIR KRPPEPYKGKG+LYK E IKRKVGKSGK
Sbjct:    1 MSRIGKLPIKVPPNVQVEINKQTIHISGPHGKLFRKISDLILVERQKDFIIITKAGNTKIANQLYGLTRTLINNMIIGVSQKFERILQLQGVGYRAQITGNNLVLNLGYSHPISIEVPIGIEIKVEKNVVITITGFDKELVGQLAATIRSKRPPEPYKGKGVLYKNESIKRKVGKSGK 178
[Close]
BLAST of mRNA_H-paniculata_contig2119.5549.1 vs. uniprot
Match: A0A7T8JK47_SCYLO (50S ribosomal protein L6, chloroplastic n=4 Tax=Scytosiphonaceae TaxID=2891 RepID=A0A7T8JK47_SCYLO)

HSP 1 Score: 279 bits (714), Expect = 6.150e-94
Identity = 137/178 (76.97%), Postives = 158/178 (88.76%), Query Frame = 1 
Query:    1 MSRIGKLPIIIPVNVQVEINQQTISISGPHGKLFKKISDLISVQVQNNTIYVTKNNNTRIANQLYGLTRTLINNMVIGVSKKFERILQLQGVGYRAQVTGNDLILNLGYSHPIIIMIPKGVDIKVEKNGEIYISGFDNELIGQLAATIRDKRPPEPYKGKGILYKGEIIKRKVGKSGK 534
            M RIGKLPI +P NVQVEIN + + +SGP GKL + ISDLISV++++NTIYVTKN +TRIANQLYGLTRTLINNMVIGVS+KFER LQL+GVGYRAQ+   DL+LNLGYSHP++I IP G++IKVEKN  I I+GFD EL+GQLAATIR+KRPPEPYKGKGILYKGEIIKRKVGKSGK
Sbjct:    1 MGRIGKLPIKVPSNVQVEINNKIVQVSGPQGKLLRTISDLISVELRDNTIYVTKNEDTRIANQLYGLTRTLINNMVIGVSQKFERTLQLEGVGYRAQLNNKDLVLNLGYSHPVLITIPLGIEIKVEKNVGIIITGFDKELVGQLAATIREKRPPEPYKGKGILYKGEIIKRKVGKSGK 178
[Close]
BLAST of mRNA_H-paniculata_contig2119.5549.1 vs. uniprot
Match: A0A8F0FAR1_9PHAE (Ribosomal protein L6 n=1 Tax=Desmarestia aculeata TaxID=62298 RepID=A0A8F0FAR1_9PHAE)

HSP 1 Score: 277 bits (709), Expect = 3.560e-93
Identity = 140/178 (78.65%), Postives = 156/178 (87.64%), Query Frame = 1 
Query:    1 MSRIGKLPIIIPVNVQVEINQQTISISGPHGKLFKKISDLISVQVQNNTIYVTKNNNTRIANQLYGLTRTLINNMVIGVSKKFERILQLQGVGYRAQVTGNDLILNLGYSHPIIIMIPKGVDIKVEKNGEIYISGFDNELIGQLAATIRDKRPPEPYKGKGILYKGEIIKRKVGKSGK 534
            MSRIGKLPI +P +V+VEINQQ I ISGPHGKLF+KISDL+SV+V +  IYV KN +TRIANQLYGLTRTLINNMVIGVS+KFE  LQLQGVGYR QV G +LILNLGYSH ++I IP G+DIKVEKN  I I+GFD EL+GQ+AATIR KRPPEPYKGKGILYKGEIIKRKVGKSGK
Sbjct:    1 MSRIGKLPIKVPSSVEVEINQQIIHISGPHGKLFRKISDLMSVEVNDGNIYVKKNKDTRIANQLYGLTRTLINNMVIGVSEKFELTLQLQGVGYRGQVKGKELILNLGYSHQVLIPIPVGIDIKVEKNVIIIITGFDKELVGQIAATIRSKRPPEPYKGKGILYKGEIIKRKVGKSGK 178
[Close]
BLAST of mRNA_H-paniculata_contig2119.5549.1 vs. uniprot
Match: A0A8F0JZ53_9PHAE (Ribosomal protein L6 n=1 Tax=Chorda asiatica TaxID=1281577 RepID=A0A8F0JZ53_9PHAE)

HSP 1 Score: 275 bits (704), Expect = 2.050e-92
Identity = 137/178 (76.97%), Postives = 156/178 (87.64%), Query Frame = 1 
Query:    1 MSRIGKLPIIIPVNVQVEINQQTISISGPHGKLFKKISDLISVQVQNNTIYVTKNNNTRIANQLYGLTRTLINNMVIGVSKKFERILQLQGVGYRAQVTGNDLILNLGYSHPIIIMIPKGVDIKVEKNGEIYISGFDNELIGQLAATIRDKRPPEPYKGKGILYKGEIIKRKVGKSGK 534
            M RIGKLPI +P NVQVE+N+  I ISGPHGKLF+KISDLISV++ +N IYV KN +TRIANQLYGL+RTLINNMVIGVS+KFER LQLQGVGYRAQ+    L+LNLGYSHPI+I+IP G+DI VEKN  I I+GFD E++GQLAATIR KRPPEPYKGKG+LYKGEIIKRKVGKSGK
Sbjct:    1 MVRIGKLPIKVPSNVQVEVNENIIQISGPHGKLFRKISDLISVKLSDNIIYVKKNEDTRIANQLYGLSRTLINNMVIGVSQKFERTLQLQGVGYRAQLKDKHLVLNLGYSHPILILIPVGIDIIVEKNVGIIITGFDKEVVGQLAATIRSKRPPEPYKGKGVLYKGEIIKRKVGKSGK 178
[Close]
BLAST of mRNA_H-paniculata_contig2119.5549.1 vs. uniprot
Match: A0A6B7EUU6_9PHAE (50S ribosomal protein L6 n=1 Tax=Cladosiphon okamuranus TaxID=309737 RepID=A0A6B7EUU6_9PHAE)

HSP 1 Score: 269 bits (688), Expect = 5.620e-90
Identity = 131/178 (73.60%), Postives = 155/178 (87.08%), Query Frame = 1 
Query:    1 MSRIGKLPIIIPVNVQVEINQQTISISGPHGKLFKKISDLISVQVQNNTIYVTKNNNTRIANQLYGLTRTLINNMVIGVSKKFERILQLQGVGYRAQVTGNDLILNLGYSHPIIIMIPKGVDIKVEKNGEIYISGFDNELIGQLAATIRDKRPPEPYKGKGILYKGEIIKRKVGKSGK 534
            M RIGKLPI +P NVQV I+ +T+ ++GP GK+F+ ISDLISV++++N IYVTK   +RIANQLYGLTRTLINNMV+GVS+KFER LQL+GVGYRAQ+   DL+LNLGYSHP++I IP G+DIKVEKN  I I+GFD EL+GQLAATIR KRPPEPYKGKG+LYKGEIIKRKVGKSGK
Sbjct:    1 MGRIGKLPIEVPSNVQVNIDDKTVQVAGPQGKIFRTISDLISVELRDNFIYVTKAEESRIANQLYGLTRTLINNMVVGVSQKFERTLQLEGVGYRAQLQNKDLVLNLGYSHPVLIEIPLGIDIKVEKNIGIIITGFDKELVGQLAATIRSKRPPEPYKGKGVLYKGEIIKRKVGKSGK 178
[Close]
BLAST of mRNA_H-paniculata_contig2119.5549.1 vs. uniprot
Match: A0A2I4Q301_9PHAE (50S ribosomal protein L6, chloroplastic n=1 Tax=Dictyopteris divaricata TaxID=156996 RepID=A0A2I4Q301_9PHAE)

HSP 1 Score: 255 bits (651), Expect = 2.420e-84
Identity = 119/178 (66.85%), Postives = 151/178 (84.83%), Query Frame = 1 
Query:    1 MSRIGKLPIIIPVNVQVEINQQTISISGPHGKLFKKISDLISVQVQNNTIYVTKNNNTRIANQLYGLTRTLINNMVIGVSKKFERILQLQGVGYRAQVTGNDLILNLGYSHPIIIMIPKGVDIKVEKNGEIYISGFDNELIGQLAATIRDKRPPEPYKGKGILYKGEIIKRKVGKSGK 534
            MSRIGKLPI IP NV+VE+ +Q I+I+GPHGKL ++IS  IS+Q+ NN + + K +N+R  NQLYGL+RTLINNM+IGVSKKF++ L L+GVGYRAQ+   DL+LNLG+SHP++++IP G+++ +EKNG I I GFD EL+GQ AATI+ KRPPEPYKGKGIL+KGEIIKRKVGKSGK
Sbjct:    1 MSRIGKLPIAIPENVEVEVKEQIINITGPHGKLVREISSTISIQLANNFLTLKKRDNSRFTNQLYGLSRTLINNMIIGVSKKFDKTLMLEGVGYRAQIVNKDLVLNLGFSHPVLLLIPDGIEVVLEKNGIIIIRGFDKELVGQFAATIKSKRPPEPYKGKGILFKGEIIKRKVGKSGK 178
The following BLAST results are available for this feature:
BLAST of mRNA_H-paniculata_contig2119.5549.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 vs UniRef90)
Total hits: 25
Match NameE-valueIdentityDescription
A0A8F0F877_9PHAE1.760e-10989.89Ribosomal protein L6 n=1 Tax=Protohalopteris sp. T... [more]
A0A0R6MG01_UNDPI5.520e-9779.2150S ribosomal protein L6, chloroplastic n=25 Tax=L... [more]
D1J738_ECTSI4.530e-9679.2150S ribosomal protein L6, chloroplastic n=3 Tax=Ec... [more]
A0A8F0F7U1_9PHAE1.840e-9578.09Ribosomal protein L6 n=2 Tax=Laminariales TaxID=28... [more]
A0A2R4QQ37_9PHAE4.330e-9478.6550S ribosomal protein L6 n=3 Tax=Fucaceae TaxID=30... [more]
A0A7T8JK47_SCYLO6.150e-9476.9750S ribosomal protein L6, chloroplastic n=4 Tax=Sc... [more]
A0A8F0FAR1_9PHAE3.560e-9378.65Ribosomal protein L6 n=1 Tax=Desmarestia aculeata ... [more]
A0A8F0JZ53_9PHAE2.050e-9276.97Ribosomal protein L6 n=1 Tax=Chorda asiatica TaxID... [more]
A0A6B7EUU6_9PHAE5.620e-9073.6050S ribosomal protein L6 n=1 Tax=Cladosiphon okamu... [more]
A0A2I4Q301_9PHAE2.420e-8466.8550S ribosomal protein L6, chloroplastic n=1 Tax=Di... [more]

Pages

back to top
Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
H-paniculata_contig2119contigH-paniculata_contig2119:21475..22011 +
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 vs UniRef902022-09-19
OGS1.0 of Halopteris paniculata Hal_grac_a_UBK monoicous2021-02-24
Properties
Property NameValue
Taxonomic scopeEukaryota
Seed ortholog score285.0
Seed ortholog evalue2.4e-74
Seed eggNOG ortholog2880.D1J738
Preferred nameMRPL6
KEGG koko:K02933,ko:K21850
KEGG Pathwayko03010,map03010
KEGG ModuleM00178,M00179
Hectar predicted targeting categoryother localisation
GOsGO:0000003,GO:0000313,GO:0000315,GO:0003006,GO:0003674,GO:0003676,GO:0003723,GO:0003735,GO:0005198,GO:0005488,GO:0005575,GO:0005622,GO:0005623,GO:0005737,GO:0005739,GO:0005759,GO:0005761,GO:0005762,GO:0005840,GO:0006412,GO:0006518,GO:0006807,GO:0007275,GO:0008150,GO:0008152,GO:0009058,GO:0009059,GO:0009507,GO:0009526,GO:0009532,GO:0009536,GO:0009570,GO:0009719,GO:0009725,GO:0009735,GO:0009790,GO:0009791,GO:0009793,GO:0009941,GO:0009987,GO:0010033,GO:0010154,GO:0010467,GO:0015934,GO:0016020,GO:0019538,GO:0022414,GO:0031967,GO:0031974,GO:0031975,GO:0032501,GO:0032502,GO:0032543,GO:0032991,GO:0034641,GO:0034645,GO:0042221,GO:0043043,GO:0043170,GO:0043226,GO:0043227,GO:0043228,GO:0043229,GO:0043231,GO:0043232,GO:0043233,GO:0043603,GO:0043604,GO:0044237,GO:0044238,GO:0044249,GO:0044260,GO:0044267,GO:0044271,GO:0044391,GO:0044422,GO:0044424,GO:0044429,GO:0044434,GO:0044435,GO:0044444,GO:0044446,GO:0044464,GO:0048316,GO:0048608,GO:0048731,GO:0048856,GO:0050896,GO:0061458,GO:0070013,GO:0071704,GO:0097159,GO:0098798,GO:0140053,GO:1901363,GO:1901564,GO:1901566,GO:1901576,GO:1990904
EggNOG free text desc.rRNA binding
EggNOG OGsCOG0097@1,KOG3254@2759
COG Functional cat.J
CAZyGH16
Best tax levelEukaryota
Best eggNOG OGNA|NA|NA
BRITEbr01610,ko00000,ko00001,ko00002,ko03011,ko04131
Exons1
Model size537
Cds size537
Stop1
Start1
Relationships

The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1622929563.6799378-CDS-H-paniculata_contig2119:21474..220111622929563.6799378-CDS-H-paniculata_contig2119:21474..22011Halopteris paniculata Hal_grac_a_UBK monoicousCDSH-paniculata_contig2119 21475..22011 +
1691480915.7525246-CDS-H-paniculata_contig2119:21474..220111691480915.7525246-CDS-H-paniculata_contig2119:21474..22011Halopteris paniculata Hal_grac_a_UBK monoicousCDSH-paniculata_contig2119 21475..22011 +


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_H-paniculata_contig2119.5549.1prot_H-paniculata_contig2119.5549.1Halopteris paniculata Hal_grac_a_UBK monoicouspolypeptideH-paniculata_contig2119 21475..22011 +


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_H-paniculata_contig2119.5549.1

>prot_H-paniculata_contig2119.5549.1 ID=prot_H-paniculata_contig2119.5549.1|Name=mRNA_H-paniculata_contig2119.5549.1|organism=Halopteris paniculata Hal_grac_a_UBK monoicous|type=polypeptide|length=179bp
MSRIGKLPIIIPVNVQVEINQQTISISGPHGKLFKKISDLISVQVQNNTI
YVTKNNNTRIANQLYGLTRTLINNMVIGVSKKFERILQLQGVGYRAQVTG
NDLILNLGYSHPIIIMIPKGVDIKVEKNGEIYISGFDNELIGQLAATIRD
KRPPEPYKGKGILYKGEIIKRKVGKSGK*
back to top

mRNA from alignment at H-paniculata_contig2119:21475..22011+

Legend: CDSpolypeptide
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_H-paniculata_contig2119.5549.1 ID=mRNA_H-paniculata_contig2119.5549.1|Name=mRNA_H-paniculata_contig2119.5549.1|organism=Halopteris paniculata Hal_grac_a_UBK monoicous|type=mRNA|length=537bp|location=Sequence derived from alignment at H-paniculata_contig2119:21475..22011+ (Halopteris paniculata Hal_grac_a_UBK monoicous)
ATGTCAAGAATAGGGAAACTACCAATAATAATACCAGTGAATGTCCAAGT
TGAAATTAATCAGCAAACTATTTCTATTTCAGGCCCGCATGGTAAACTTT
TTAAAAAGATTTCTGATTTAATTTCAGTTCAAGTTCAAAATAATACTATT
TATGTAACAAAAAACAATAATACAAGGATTGCAAATCAACTTTATGGATT
AACACGAACTTTAATTAATAATATGGTTATTGGAGTTTCCAAGAAATTTG
AACGAATATTGCAACTTCAAGGAGTTGGGTATCGTGCGCAAGTAACTGGG
AATGATTTAATTTTAAATTTGGGTTATAGCCATCCTATTATAATAATGAT
TCCCAAAGGAGTTGACATTAAAGTTGAAAAAAATGGAGAGATTTACATTT
CGGGTTTTGATAACGAACTTATTGGGCAATTAGCAGCAACAATTAGAGAT
AAAAGGCCACCTGAACCTTATAAAGGTAAGGGTATATTATATAAAGGTGA
AATTATTAAACGTAAAGTAGGAAAATCAGGTAAATAA
back to top

Coding sequence (CDS) from alignment at H-paniculata_contig2119:21475..22011+

>mRNA_H-paniculata_contig2119.5549.1 ID=mRNA_H-paniculata_contig2119.5549.1|Name=mRNA_H-paniculata_contig2119.5549.1|organism=Halopteris paniculata Hal_grac_a_UBK monoicous|type=CDS|length=1074bp|location=Sequence derived from alignment at H-paniculata_contig2119:21475..22011+ (Halopteris paniculata Hal_grac_a_UBK monoicous)
ATGTCAAGAATAGGGAAACTACCAATAATAATACCAGTGAATGTCCAAGT
TGAAATTAATCAGCAAACTATTTCTATTTCAGGCCCGCATGGTAAACTTT
TTAAAAAGATTTCTGATTTAATTTCAGTTCAAGTTCAAAATAATACTATT
TATGTAACAAAAAACAATAATACAAGGATTGCAAATCAACTTTATGGATT
AACACGAACTTTAATTAATAATATGGTTATTGGAGTTTCCAAGAAATTTG
AACGAATATTGCAACTTCAAGGAGTTGGGTATCGTGCGCAAGTAACTGGG
AATGATTTAATTTTAAATTTGGGTTATAGCCATCCTATTATAATAATGAT
TCCCAAAGGAGTTGACATTAAAGTTGAAAAAAATGGAGAGATTTACATTT
CGGGTTTTGATAACGAACTTATTGGGCAATTAGCAGCAACAATTAGAGAT
AAAAGGCCACCTGAACCTTATAAAGGTAAGGGTATATTATATAAAGGTGA
AATTATTAAACGTAAAGTAGGAAAATCAGGTAAATAAATGTCAAGAATAG
GGAAACTACCAATAATAATACCAGTGAATGTCCAAGTTGAAATTAATCAG
CAAACTATTTCTATTTCAGGCCCGCATGGTAAACTTTTTAAAAAGATTTC
TGATTTAATTTCAGTTCAAGTTCAAAATAATACTATTTATGTAACAAAAA
ACAATAATACAAGGATTGCAAATCAACTTTATGGATTAACACGAACTTTA
ATTAATAATATGGTTATTGGAGTTTCCAAGAAATTTGAACGAATATTGCA
ACTTCAAGGAGTTGGGTATCGTGCGCAAGTAACTGGGAATGATTTAATTT
TAAATTTGGGTTATAGCCATCCTATTATAATAATGATTCCCAAAGGAGTT
GACATTAAAGTTGAAAAAAATGGAGAGATTTACATTTCGGGTTTTGATAA
CGAACTTATTGGGCAATTAGCAGCAACAATTAGAGATAAAAGGCCACCTG
AACCTTATAAAGGTAAGGGTATATTATATAAAGGTGAAATTATTAAACGT
AAAGTAGGAAAATCAGGTAAATAA
back to top