prot_H-paniculata_contig2119.5549.1 (polypeptide) Halopteris paniculata Hal_grac_a_UBK monoicous

You are viewing a polypeptide, more information available on the corresponding mRNA page

Overview
NamemRNA_H-paniculata_contig2119.5549.1
Unique Nameprot_H-paniculata_contig2119.5549.1
Typepolypeptide
OrganismHalopteris paniculata Hal_grac_a_UBK monoicous (Halopteris paniculata Hal_grac_a_UBK monoicous)
Sequence length179
Homology
BLAST of mRNA_H-paniculata_contig2119.5549.1 vs. uniprot
Match: A0A8F0F877_9PHAE (Ribosomal protein L6 n=1 Tax=Protohalopteris sp. TaxID=2843287 RepID=A0A8F0F877_9PHAE)

HSP 1 Score: 318 bits (816), Expect = 1.760e-109
Identity = 160/178 (89.89%), Postives = 170/178 (95.51%), Query Frame = 0
Query:    1 MSRIGKLPIIIPVNVQVEINQQTISISGPHGKLFKKISDLISVQVQNNTIYVTKNNNTRIANQLYGLTRTLINNMVIGVSKKFERILQLQGVGYRAQVTGNDLILNLGYSHPIIIMIPKGVDIKVEKNGEIYISGFDNELIGQLAATIRDKRPPEPYKGKGILYKGEIIKRKVGKSGK 178
            MSRIGKLPI+IP NVQVEI+++TISISGPHGKLFKKISDLISVQV NN IYVTKNNNTRIANQLYGLTRTLINNMVIGVS KFERILQLQGVGYRAQVTGNDLILNLGYSHPI I IPKG++I++EKNGEI ISGFD ELIGQLA+TIR+KRPPEPYKGKGILYKGEIIKRKVGKSGK
Sbjct:    1 MSRIGKLPIVIPANVQVEISERTISISGPHGKLFKKISDLISVQVNNNNIYVTKNNNTRIANQLYGLTRTLINNMVIGVSNKFERILQLQGVGYRAQVTGNDLILNLGYSHPIKITIPKGINIQIEKNGEIIISGFDKELIGQLASTIRNKRPPEPYKGKGILYKGEIIKRKVGKSGK 178          
BLAST of mRNA_H-paniculata_contig2119.5549.1 vs. uniprot
Match: A0A0R6MG01_UNDPI (50S ribosomal protein L6, chloroplastic n=25 Tax=Laminariales TaxID=2886 RepID=A0A0R6MG01_UNDPI)

HSP 1 Score: 287 bits (734), Expect = 5.520e-97
Identity = 141/178 (79.21%), Postives = 159/178 (89.33%), Query Frame = 0
Query:    1 MSRIGKLPIIIPVNVQVEINQQTISISGPHGKLFKKISDLISVQVQNNTIYVTKNNNTRIANQLYGLTRTLINNMVIGVSKKFERILQLQGVGYRAQVTGNDLILNLGYSHPIIIMIPKGVDIKVEKNGEIYISGFDNELIGQLAATIRDKRPPEPYKGKGILYKGEIIKRKVGKSGK 178
            M RIGKLPI +P NVQVEINQ  I +SGPHGKLF+KISD+ISV++ +N IYV KN NTRIANQLYGL+RTLINNMV+GVS+KFER L+LQGVGYRAQ+ G DL+LNLGYSHPI+I IP G++IKVEKN  I I+GFDNEL+GQLAATIR KRPPEPYKGKGILYKGEIIKRKVGKSGK
Sbjct:    1 MGRIGKLPIKVPSNVQVEINQNNIEVSGPHGKLFRKISDVISVELSDNIIYVKKNENTRIANQLYGLSRTLINNMVVGVSQKFERTLELQGVGYRAQLKGKDLVLNLGYSHPILIAIPLGIEIKVEKNVGIIITGFDNELVGQLAATIRSKRPPEPYKGKGILYKGEIIKRKVGKSGK 178          
BLAST of mRNA_H-paniculata_contig2119.5549.1 vs. uniprot
Match: D1J738_ECTSI (50S ribosomal protein L6, chloroplastic n=3 Tax=Ectocarpales TaxID=2877 RepID=D1J738_ECTSI)

HSP 1 Score: 285 bits (728), Expect = 4.530e-96
Identity = 141/178 (79.21%), Postives = 160/178 (89.89%), Query Frame = 0
Query:    1 MSRIGKLPIIIPVNVQVEINQQTISISGPHGKLFKKISDLISVQVQNNTIYVTKNNNTRIANQLYGLTRTLINNMVIGVSKKFERILQLQGVGYRAQVTGNDLILNLGYSHPIIIMIPKGVDIKVEKNGEIYISGFDNELIGQLAATIRDKRPPEPYKGKGILYKGEIIKRKVGKSGK 178
            M RIGKLPI +P NVQVEIN++ + +SGP GKLF+ ISDLISV++++N IYV+KN NTRIANQLYGLTRTLINNMVIGVS+KFER LQL+GVGYRAQ+ G DLILNLGYSHP++I IP G+DIKVEKN  I I+GFD ELIGQLAATIR+KRPPEPYKGKGILYKGEIIKRKVGKSGK
Sbjct:    1 MGRIGKLPIKVPSNVQVEINEKIVQVSGPQGKLFRTISDLISVELRDNKIYVSKNENTRIANQLYGLTRTLINNMVIGVSQKFERTLQLEGVGYRAQIKGKDLILNLGYSHPVLITIPLGIDIKVEKNIGIIITGFDKELIGQLAATIRNKRPPEPYKGKGILYKGEIIKRKVGKSGK 178          
BLAST of mRNA_H-paniculata_contig2119.5549.1 vs. uniprot
Match: A0A8F0F7U1_9PHAE (Ribosomal protein L6 n=2 Tax=Laminariales TaxID=2886 RepID=A0A8F0F7U1_9PHAE)

HSP 1 Score: 283 bits (724), Expect = 1.840e-95
Identity = 139/178 (78.09%), Postives = 158/178 (88.76%), Query Frame = 0
Query:    1 MSRIGKLPIIIPVNVQVEINQQTISISGPHGKLFKKISDLISVQVQNNTIYVTKNNNTRIANQLYGLTRTLINNMVIGVSKKFERILQLQGVGYRAQVTGNDLILNLGYSHPIIIMIPKGVDIKVEKNGEIYISGFDNELIGQLAATIRDKRPPEPYKGKGILYKGEIIKRKVGKSGK 178
            M+RIGKLPI +P NVQVE+N++ I +SGPHGKLF+  SDLISV++ +N IYV K  NTRIANQLYGLTRTLINNMVIGVS+KFER LQLQGVGYRAQV G DL+LNLGYSHP++I IP+G+DIKVEKN  I I+GFD EL+GQLAATIR KRPPEPYKGKG+LYKGEIIKRKVGKSGK
Sbjct:    1 MARIGKLPIKVPSNVQVEVNKKNIKVSGPHGKLFRTFSDLISVELTDNIIYVKKMENTRIANQLYGLTRTLINNMVIGVSQKFERTLQLQGVGYRAQVQGKDLVLNLGYSHPVLISIPEGIDIKVEKNVGIIITGFDKELVGQLAATIRGKRPPEPYKGKGVLYKGEIIKRKVGKSGK 178          
BLAST of mRNA_H-paniculata_contig2119.5549.1 vs. uniprot
Match: A0A2R4QQ37_9PHAE (50S ribosomal protein L6 n=3 Tax=Fucaceae TaxID=3010 RepID=A0A2R4QQ37_9PHAE)

HSP 1 Score: 280 bits (715), Expect = 4.330e-94
Identity = 140/178 (78.65%), Postives = 158/178 (88.76%), Query Frame = 0
Query:    1 MSRIGKLPIIIPVNVQVEINQQTISISGPHGKLFKKISDLISVQVQNNTIYVTKNNNTRIANQLYGLTRTLINNMVIGVSKKFERILQLQGVGYRAQVTGNDLILNLGYSHPIIIMIPKGVDIKVEKNGEIYISGFDNELIGQLAATIRDKRPPEPYKGKGILYKGEIIKRKVGKSGK 178
            MSRIGKLPI +P NVQVEIN+QTI ISGPHGKLF+KISDLI V+ Q + I +TK  NT+IANQLYGLTRTLINNM+IGVS+KFERILQLQGVGYRAQ+TGN+L+LNLGYSHPI I +P G++IKVEKN  I I+GFD EL+GQLAATIR KRPPEPYKGKG+LYK E IKRKVGKSGK
Sbjct:    1 MSRIGKLPIKVPPNVQVEINKQTIHISGPHGKLFRKISDLILVERQKDFIIITKAGNTKIANQLYGLTRTLINNMIIGVSQKFERILQLQGVGYRAQITGNNLVLNLGYSHPISIEVPIGIEIKVEKNVVITITGFDKELVGQLAATIRSKRPPEPYKGKGVLYKNESIKRKVGKSGK 178          
BLAST of mRNA_H-paniculata_contig2119.5549.1 vs. uniprot
Match: A0A7T8JK47_SCYLO (50S ribosomal protein L6, chloroplastic n=4 Tax=Scytosiphonaceae TaxID=2891 RepID=A0A7T8JK47_SCYLO)

HSP 1 Score: 279 bits (714), Expect = 6.150e-94
Identity = 137/178 (76.97%), Postives = 158/178 (88.76%), Query Frame = 0
Query:    1 MSRIGKLPIIIPVNVQVEINQQTISISGPHGKLFKKISDLISVQVQNNTIYVTKNNNTRIANQLYGLTRTLINNMVIGVSKKFERILQLQGVGYRAQVTGNDLILNLGYSHPIIIMIPKGVDIKVEKNGEIYISGFDNELIGQLAATIRDKRPPEPYKGKGILYKGEIIKRKVGKSGK 178
            M RIGKLPI +P NVQVEIN + + +SGP GKL + ISDLISV++++NTIYVTKN +TRIANQLYGLTRTLINNMVIGVS+KFER LQL+GVGYRAQ+   DL+LNLGYSHP++I IP G++IKVEKN  I I+GFD EL+GQLAATIR+KRPPEPYKGKGILYKGEIIKRKVGKSGK
Sbjct:    1 MGRIGKLPIKVPSNVQVEINNKIVQVSGPQGKLLRTISDLISVELRDNTIYVTKNEDTRIANQLYGLTRTLINNMVIGVSQKFERTLQLEGVGYRAQLNNKDLVLNLGYSHPVLITIPLGIEIKVEKNVGIIITGFDKELVGQLAATIREKRPPEPYKGKGILYKGEIIKRKVGKSGK 178          
BLAST of mRNA_H-paniculata_contig2119.5549.1 vs. uniprot
Match: A0A8F0FAR1_9PHAE (Ribosomal protein L6 n=1 Tax=Desmarestia aculeata TaxID=62298 RepID=A0A8F0FAR1_9PHAE)

HSP 1 Score: 277 bits (709), Expect = 3.560e-93
Identity = 140/178 (78.65%), Postives = 156/178 (87.64%), Query Frame = 0
Query:    1 MSRIGKLPIIIPVNVQVEINQQTISISGPHGKLFKKISDLISVQVQNNTIYVTKNNNTRIANQLYGLTRTLINNMVIGVSKKFERILQLQGVGYRAQVTGNDLILNLGYSHPIIIMIPKGVDIKVEKNGEIYISGFDNELIGQLAATIRDKRPPEPYKGKGILYKGEIIKRKVGKSGK 178
            MSRIGKLPI +P +V+VEINQQ I ISGPHGKLF+KISDL+SV+V +  IYV KN +TRIANQLYGLTRTLINNMVIGVS+KFE  LQLQGVGYR QV G +LILNLGYSH ++I IP G+DIKVEKN  I I+GFD EL+GQ+AATIR KRPPEPYKGKGILYKGEIIKRKVGKSGK
Sbjct:    1 MSRIGKLPIKVPSSVEVEINQQIIHISGPHGKLFRKISDLMSVEVNDGNIYVKKNKDTRIANQLYGLTRTLINNMVIGVSEKFELTLQLQGVGYRGQVKGKELILNLGYSHQVLIPIPVGIDIKVEKNVIIIITGFDKELVGQIAATIRSKRPPEPYKGKGILYKGEIIKRKVGKSGK 178          
BLAST of mRNA_H-paniculata_contig2119.5549.1 vs. uniprot
Match: A0A8F0JZ53_9PHAE (Ribosomal protein L6 n=1 Tax=Chorda asiatica TaxID=1281577 RepID=A0A8F0JZ53_9PHAE)

HSP 1 Score: 275 bits (704), Expect = 2.050e-92
Identity = 137/178 (76.97%), Postives = 156/178 (87.64%), Query Frame = 0
Query:    1 MSRIGKLPIIIPVNVQVEINQQTISISGPHGKLFKKISDLISVQVQNNTIYVTKNNNTRIANQLYGLTRTLINNMVIGVSKKFERILQLQGVGYRAQVTGNDLILNLGYSHPIIIMIPKGVDIKVEKNGEIYISGFDNELIGQLAATIRDKRPPEPYKGKGILYKGEIIKRKVGKSGK 178
            M RIGKLPI +P NVQVE+N+  I ISGPHGKLF+KISDLISV++ +N IYV KN +TRIANQLYGL+RTLINNMVIGVS+KFER LQLQGVGYRAQ+    L+LNLGYSHPI+I+IP G+DI VEKN  I I+GFD E++GQLAATIR KRPPEPYKGKG+LYKGEIIKRKVGKSGK
Sbjct:    1 MVRIGKLPIKVPSNVQVEVNENIIQISGPHGKLFRKISDLISVKLSDNIIYVKKNEDTRIANQLYGLSRTLINNMVIGVSQKFERTLQLQGVGYRAQLKDKHLVLNLGYSHPILILIPVGIDIIVEKNVGIIITGFDKEVVGQLAATIRSKRPPEPYKGKGVLYKGEIIKRKVGKSGK 178          
BLAST of mRNA_H-paniculata_contig2119.5549.1 vs. uniprot
Match: A0A6B7EUU6_9PHAE (50S ribosomal protein L6 n=1 Tax=Cladosiphon okamuranus TaxID=309737 RepID=A0A6B7EUU6_9PHAE)

HSP 1 Score: 269 bits (688), Expect = 5.620e-90
Identity = 131/178 (73.60%), Postives = 155/178 (87.08%), Query Frame = 0
Query:    1 MSRIGKLPIIIPVNVQVEINQQTISISGPHGKLFKKISDLISVQVQNNTIYVTKNNNTRIANQLYGLTRTLINNMVIGVSKKFERILQLQGVGYRAQVTGNDLILNLGYSHPIIIMIPKGVDIKVEKNGEIYISGFDNELIGQLAATIRDKRPPEPYKGKGILYKGEIIKRKVGKSGK 178
            M RIGKLPI +P NVQV I+ +T+ ++GP GK+F+ ISDLISV++++N IYVTK   +RIANQLYGLTRTLINNMV+GVS+KFER LQL+GVGYRAQ+   DL+LNLGYSHP++I IP G+DIKVEKN  I I+GFD EL+GQLAATIR KRPPEPYKGKG+LYKGEIIKRKVGKSGK
Sbjct:    1 MGRIGKLPIEVPSNVQVNIDDKTVQVAGPQGKIFRTISDLISVELRDNFIYVTKAEESRIANQLYGLTRTLINNMVVGVSQKFERTLQLEGVGYRAQLQNKDLVLNLGYSHPVLIEIPLGIDIKVEKNIGIIITGFDKELVGQLAATIRSKRPPEPYKGKGVLYKGEIIKRKVGKSGK 178          
BLAST of mRNA_H-paniculata_contig2119.5549.1 vs. uniprot
Match: A0A2I4Q301_9PHAE (50S ribosomal protein L6, chloroplastic n=1 Tax=Dictyopteris divaricata TaxID=156996 RepID=A0A2I4Q301_9PHAE)

HSP 1 Score: 255 bits (651), Expect = 2.420e-84
Identity = 119/178 (66.85%), Postives = 151/178 (84.83%), Query Frame = 0
Query:    1 MSRIGKLPIIIPVNVQVEINQQTISISGPHGKLFKKISDLISVQVQNNTIYVTKNNNTRIANQLYGLTRTLINNMVIGVSKKFERILQLQGVGYRAQVTGNDLILNLGYSHPIIIMIPKGVDIKVEKNGEIYISGFDNELIGQLAATIRDKRPPEPYKGKGILYKGEIIKRKVGKSGK 178
            MSRIGKLPI IP NV+VE+ +Q I+I+GPHGKL ++IS  IS+Q+ NN + + K +N+R  NQLYGL+RTLINNM+IGVSKKF++ L L+GVGYRAQ+   DL+LNLG+SHP++++IP G+++ +EKNG I I GFD EL+GQ AATI+ KRPPEPYKGKGIL+KGEIIKRKVGKSGK
Sbjct:    1 MSRIGKLPIAIPENVEVEVKEQIINITGPHGKLVREISSTISIQLANNFLTLKKRDNSRFTNQLYGLSRTLINNMIIGVSKKFDKTLMLEGVGYRAQIVNKDLVLNLGFSHPVLLLIPDGIEVVLEKNGIIIIRGFDKELVGQFAATIKSKRPPEPYKGKGILFKGEIIKRKVGKSGK 178          
The following BLAST results are available for this feature:
BLAST of mRNA_H-paniculata_contig2119.5549.1 vs. uniprot
Analysis Date: 2022-09-16 (Diamond blastp: OGS1.0 vs UniRef90)
Total hits: 25
Match NameE-valueIdentityDescription
A0A8F0F877_9PHAE1.760e-10989.89Ribosomal protein L6 n=1 Tax=Protohalopteris sp. T... [more]
A0A0R6MG01_UNDPI5.520e-9779.2150S ribosomal protein L6, chloroplastic n=25 Tax=L... [more]
D1J738_ECTSI4.530e-9679.2150S ribosomal protein L6, chloroplastic n=3 Tax=Ec... [more]
A0A8F0F7U1_9PHAE1.840e-9578.09Ribosomal protein L6 n=2 Tax=Laminariales TaxID=28... [more]
A0A2R4QQ37_9PHAE4.330e-9478.6550S ribosomal protein L6 n=3 Tax=Fucaceae TaxID=30... [more]
A0A7T8JK47_SCYLO6.150e-9476.9750S ribosomal protein L6, chloroplastic n=4 Tax=Sc... [more]
A0A8F0FAR1_9PHAE3.560e-9378.65Ribosomal protein L6 n=1 Tax=Desmarestia aculeata ... [more]
A0A8F0JZ53_9PHAE2.050e-9276.97Ribosomal protein L6 n=1 Tax=Chorda asiatica TaxID... [more]
A0A6B7EUU6_9PHAE5.620e-9073.6050S ribosomal protein L6 n=1 Tax=Cladosiphon okamu... [more]
A0A2I4Q301_9PHAE2.420e-8466.8550S ribosomal protein L6, chloroplastic n=1 Tax=Di... [more]

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InterPro
Analysis Name: InterProScan on OGS1.0
Date Performed: 2022-09-29
IPR TermIPR DescriptionSourceSource TermSource DescriptionAlignment
IPR019906Ribosomal protein L6, bacterial-typePRINTSPR00059RIBOSOMALL6coord: 71..96
score: 56.2
coord: 141..162
score: 65.69
coord: 99..115
score: 50.09
IPR019906Ribosomal protein L6, bacterial-typeTIGRFAMTIGR03654TIGR03654coord: 2..176
e-value: 1.7E-66
score: 221.3
IPR019906Ribosomal protein L6, bacterial-typePANTHERPTHR11655:SF1454S RIBOSOMAL PROTEIN L6, MITOCHONDRIALcoord: 2..177
IPR019906Ribosomal protein L6, bacterial-typeHAMAPMF_01365_BRibosomal_L6_Bcoord: 1..176
score: 34.779
IPR000702Ribosomal protein L6PIRSFPIRSF002162RPL6p_RPL6a_RPL9e_RPL9ocoord: 1..177
e-value: 7.3E-51
score: 170.2
IPR000702Ribosomal protein L6PANTHERPTHR1165560S/50S RIBOSOMAL PROTEIN L6/L9coord: 2..177
IPR020040Ribosomal protein L6, alpha-beta domainPFAMPF00347Ribosomal_L6coord: 11..81
e-value: 2.0E-13
score: 50.8
coord: 91..164
e-value: 5.7E-17
score: 62.2
IPR036789Ribosomal protein L6, alpha-beta domain superfamilyGENE3D3.90.930.12coord: 83..178
e-value: 4.7E-37
score: 128.0
IPR036789Ribosomal protein L6, alpha-beta domain superfamilyGENE3D3.90.930.12coord: 1..81
e-value: 4.3E-26
score: 93.1
IPR036789Ribosomal protein L6, alpha-beta domain superfamilySUPERFAMILY56053Ribosomal protein L6coord: 1..81
IPR036789Ribosomal protein L6, alpha-beta domain superfamilySUPERFAMILY56053Ribosomal protein L6coord: 83..176
IPR002358Ribosomal protein L6, conserved sitePROSITEPS00525RIBOSOMAL_L6_1coord: 154..162

Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
H-paniculata_contig2119contigH-paniculata_contig2119:21475..22011 +
Analyses
This polypeptide is derived from or has results from the following analyses
Analysis NameDate Performed
InterProScan on OGS1.02022-09-29
Diamond blastp: OGS1.0 vs UniRef902022-09-16
OGS1.0 of Halopteris paniculata Hal_grac_a_UBK monoicous2021-02-24
Relationships

This polypeptide derives from the following mRNA feature(s):

Feature NameUnique NameSpeciesTypePosition
mRNA_H-paniculata_contig2119.5549.1mRNA_H-paniculata_contig2119.5549.1Halopteris paniculata Hal_grac_a_UBK monoicousmRNAH-paniculata_contig2119 21475..22011 +


Sequences
The following sequences are available for this feature:

polypeptide sequence

>prot_H-paniculata_contig2119.5549.1 ID=prot_H-paniculata_contig2119.5549.1|Name=mRNA_H-paniculata_contig2119.5549.1|organism=Halopteris paniculata Hal_grac_a_UBK monoicous|type=polypeptide|length=179bp
MSRIGKLPIIIPVNVQVEINQQTISISGPHGKLFKKISDLISVQVQNNTI
YVTKNNNTRIANQLYGLTRTLINNMVIGVSKKFERILQLQGVGYRAQVTG
NDLILNLGYSHPIIIMIPKGVDIKVEKNGEIYISGFDNELIGQLAATIRD
KRPPEPYKGKGILYKGEIIKRKVGKSGK*
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Annotated Terms
The following terms have been associated with this polypeptide:
Vocabulary: INTERPRO
TermDefinition
IPR019906Ribosomal_L6_bac-type
IPR000702Ribosomal_L6
IPR020040Ribosomal_L6_a/b-dom
IPR036789Ribosomal_L6_a/b-dom_sf
IPR002358Ribosomal_L6_CS