mRNA_H-paniculata_contig21103.5516.1 (mRNA) Halopteris paniculata Hal_grac_a_UBK monoicous

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_H-paniculata_contig21103.5516.1
Unique NamemRNA_H-paniculata_contig21103.5516.1
TypemRNA
OrganismHalopteris paniculata Hal_grac_a_UBK monoicous (Halopteris paniculata Hal_grac_a_UBK monoicous)
Homology
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BLAST of mRNA_H-paniculata_contig21103.5516.1 vs. uniprot
Match: D7FTL8_ECTSI (Leucine--tRNA ligase n=2 Tax=Ectocarpus TaxID=2879 RepID=D7FTL8_ECTSI)

HSP 1 Score: 164 bits (416), Expect = 3.780e-45
Identity = 76/87 (87.36%), Postives = 80/87 (91.95%), Query Frame = 1 
Query:    1 KGAKTKLVAKTGGATVRQWDIMKMMVPEDEIPRFTDPLVWLQYFPPRGRKDVTKFGTAVDWRRSFVTTSVNPFYDSFIRWQFNTLKA 261
            KG KTKL+AKTGGA VRQWDIMKMMVPEDEI  FTDPL WL+YFPPRGR D+ KFGTAVDWRRSFVTTSVNP+YDSFIRWQFNTLKA
Sbjct:  185 KGGKTKLIAKTGGAEVRQWDIMKMMVPEDEIRNFTDPLKWLEYFPPRGRDDMIKFGTAVDWRRSFVTTSVNPYYDSFIRWQFNTLKA 271
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BLAST of mRNA_H-paniculata_contig21103.5516.1 vs. uniprot
Match: A0A835YRC2_9STRA (Leucine--tRNA ligase n=1 Tax=Tribonema minus TaxID=303371 RepID=A0A835YRC2_9STRA)

HSP 1 Score: 154 bits (389), Expect = 1.650e-41
Identity = 73/104 (70.19%), Postives = 82/104 (78.85%), Query Frame = 1 
Query:    1 KGAKTKLVAKTGGATVRQWDIMKMMVPEDEIPRFTDPLVWLQYFPPRGRKDVTKFGTAVDWRRSFVTTSVNPFYDSFIRWQFNTLKA--------RTVQYGTVD 288
            KG K+KLVAKTGG  VRQWDIMKMMVPEDEI  FTDPL WL+YFPP G+ D+ +FG AVDWRRSF+TT+VNP+YDSFIRWQFNTLKA        R   Y T+D
Sbjct:  138 KGKKSKLVAKTGGNVVRQWDIMKMMVPEDEISAFTDPLQWLKYFPPHGKADLERFGAAVDWRRSFITTAVNPYYDSFIRWQFNTLKANDKVRFGKRANVYSTLD 241
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BLAST of mRNA_H-paniculata_contig21103.5516.1 vs. uniprot
Match: A0A7S0GHA7_9STRA (Hypothetical protein (Fragment) n=1 Tax=Proboscia inermis TaxID=420281 RepID=A0A7S0GHA7_9STRA)

HSP 1 Score: 125 bits (314), Expect = 3.380e-35
Identity = 57/88 (64.77%), Postives = 66/88 (75.00%), Query Frame = 1 
Query:    1 KGAKTKLVAKTGGATVRQWDIMKMMVPEDEIPRFTDPLVWLQYFPPRGRKDVTKFGTAVDWRRSFVTTSVNPFYDSFIRWQFNTLKAR 264
            KG KTKLV K+G   VRQW I+  MVP + IP F DPLVWL YFPPRG   +  FG  VDWRRSF+TT+VNP+YD+FIRWQF TL+ R
Sbjct:    5 KGNKTKLVQKSGTGIVRQWTILAKMVPLELIPSFIDPLVWLSYFPPRGVTHLNNFGAGVDWRRSFITTAVNPYYDAFIRWQFETLRKR 92
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BLAST of mRNA_H-paniculata_contig21103.5516.1 vs. uniprot
Match: A0A7R9UHB7_9STRA (Leucine--tRNA ligase n=1 Tax=Pinguiococcus pyrenoidosus TaxID=172671 RepID=A0A7R9UHB7_9STRA)

HSP 1 Score: 135 bits (340), Expect = 6.710e-35
Identity = 64/94 (68.09%), Postives = 73/94 (77.66%), Query Frame = 1 
Query:    1 KGAKTKLVAKTGGATVRQWDIMKMMVPEDEIPRFTDPLVWLQYFPPRGRKDVTKFGTAVDWRRSFVTTSVNPFYDSFIRWQFNTLKAR-TVQYG 279
            KG K+KLVAKTG   VRQW+I+K MVPE EIP F DPL WLQYFPP G  D+  FG A DWRRSF+TTSVNP+YDSFIRWQF  L+A   ++YG
Sbjct:   76 KGKKSKLVAKTGTGVVRQWNILKRMVPEAEIPEFVDPLKWLQYFPPYGMVDLKAFGVASDWRRSFITTSVNPYYDSFIRWQFAKLRAGGRIKYG 169
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BLAST of mRNA_H-paniculata_contig21103.5516.1 vs. uniprot
Match: A0A1E7EQY5_9STRA (Leucine--tRNA ligase n=1 Tax=Fragilariopsis cylindrus CCMP1102 TaxID=635003 RepID=A0A1E7EQY5_9STRA)

HSP 1 Score: 134 bits (338), Expect = 1.250e-34
Identity = 62/94 (65.96%), Postives = 75/94 (79.79%), Query Frame = 1 
Query:    1 KGAKTKLVAKTGGATVRQWDIMKMMVPEDEIPRFTDPLVWLQYFPPRGRKDVTKFGTAVDWRRSFVTTSVNPFYDSFIRWQFNTL-KARTVQYG 279
            K  +TKLVAKTGG  VRQW+I+KMMVPEDEIP+F DP  WLQYFPP   + +  FG  VDWRRSF+TT+VNP+YD+FIRWQF+TL K + V +G
Sbjct:  158 KSGRTKLVAKTGGGIVRQWNILKMMVPEDEIPQFVDPYHWLQYFPPICVEHLKNFGACVDWRRSFITTAVNPYYDAFIRWQFDTLRKKKKVLFG 251
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BLAST of mRNA_H-paniculata_contig21103.5516.1 vs. uniprot
Match: A0A7S2PN01_9STRA (Leucine--tRNA ligase (Fragment) n=1 Tax=Skeletonema marinoi TaxID=267567 RepID=A0A7S2PN01_9STRA)

HSP 1 Score: 128 bits (321), Expect = 2.800e-33
Identity = 55/88 (62.50%), Postives = 70/88 (79.55%), Query Frame = 1 
Query:    1 KGAKTKLVAKTGGATVRQWDIMKMMVPEDEIPRFTDPLVWLQYFPPRGRKDVTKFGTAVDWRRSFVTTSVNPFYDSFIRWQFNTLKAR 264
            KG KTKL+ KTG   VRQW+I+K MVPE+EIP+F DP+ WL +FPP G   + +FG+ VDWRR+F+TTSVN +YD+FIRWQFN LK +
Sbjct:  166 KGGKTKLIQKTGTGIVRQWNILKRMVPEEEIPKFADPIYWLMHFPPIGVDHMKRFGSGVDWRRAFITTSVNGYYDAFIRWQFNVLKQK 253
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BLAST of mRNA_H-paniculata_contig21103.5516.1 vs. uniprot
Match: B8BYD7_THAPS (Leucine--tRNA ligase n=1 Tax=Thalassiosira pseudonana TaxID=35128 RepID=B8BYD7_THAPS)

HSP 1 Score: 129 bits (323), Expect = 1.320e-32
Identity = 56/88 (63.64%), Postives = 71/88 (80.68%), Query Frame = 1 
Query:    1 KGAKTKLVAKTGGATVRQWDIMKMMVPEDEIPRFTDPLVWLQYFPPRGRKDVTKFGTAVDWRRSFVTTSVNPFYDSFIRWQFNTLKAR 264
            KG KTKLV KTG   VRQW+I+K MVPE+EIP F DP+ WL+YFPP G + + +FG+ VDWRRSF+TT+VN +YD+FIRWQFN L+ +
Sbjct:  157 KGGKTKLVQKTGTGIVRQWNILKRMVPEEEIPEFADPIHWLKYFPPIGVEHMKRFGSGVDWRRSFITTAVNGYYDAFIRWQFNVLREK 244
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BLAST of mRNA_H-paniculata_contig21103.5516.1 vs. uniprot
Match: A0A7S2UVZ9_9STRA (Hypothetical protein (Fragment) n=2 Tax=Fibrocapsa japonica TaxID=94617 RepID=A0A7S2UVZ9_9STRA)

HSP 1 Score: 127 bits (318), Expect = 1.940e-32
Identity = 55/79 (69.62%), Postives = 66/79 (83.54%), Query Frame = 1 
Query:   46 VRQWDIMKMMVPEDEIPRFTDPLVWLQYFPPRGRKDVTKFGTAVDWRRSFVTTSVNPFYDSFIRWQFNTL-KARTVQYG 279
            VRQW+I+KMMVP+DEIP F DPL WL+YFPP G +D+  FGT VDWRRSF+TTS NP+YD+F+RWQFNTL K   VQ+G
Sbjct:    3 VRQWNILKMMVPQDEIPAFVDPLKWLEYFPPYGMQDLKGFGTGVDWRRSFITTSANPYYDAFVRWQFNTLRKGDRVQFG 81
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BLAST of mRNA_H-paniculata_contig21103.5516.1 vs. uniprot
Match: A0A6U2REQ0_9STRA (Leucine--tRNA ligase n=1 Tax=Leptocylindrus danicus TaxID=163516 RepID=A0A6U2REQ0_9STRA)

HSP 1 Score: 127 bits (320), Expect = 3.360e-32
Identity = 58/88 (65.91%), Postives = 68/88 (77.27%), Query Frame = 1 
Query:    1 KGAKTKLVAKTGGATVRQWDIMKMMVPEDEIPRFTDPLVWLQYFPPRGRKDVTKFGTAVDWRRSFVTTSVNPFYDSFIRWQFNTLKAR 264
            KG KTKLVAKTG   VRQW+I+K MVPE+ I  F DP  WL YFPP G   + KFG  VDWRRSF+TT+VNP+YD+FIRWQFNTL+ +
Sbjct:  160 KGGKTKLVAKTGTGIVRQWNILKKMVPEEIIGEFVDPNKWLSYFPPIGVDHLKKFGAGVDWRRSFITTAVNPYYDAFIRWQFNTLRKK 247
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BLAST of mRNA_H-paniculata_contig21103.5516.1 vs. uniprot
Match: K0SYU8_THAOC (tRNA-synt_1 domain-containing protein n=1 Tax=Thalassiosira oceanica TaxID=159749 RepID=K0SYU8_THAOC)

HSP 1 Score: 125 bits (314), Expect = 6.160e-32
Identity = 54/88 (61.36%), Postives = 71/88 (80.68%), Query Frame = 1 
Query:    1 KGAKTKLVAKTGGATVRQWDIMKMMVPEDEIPRFTDPLVWLQYFPPRGRKDVTKFGTAVDWRRSFVTTSVNPFYDSFIRWQFNTLKAR 264
            KG KTKLV KTG   VRQW+I+K MVP +EIP+F DP+ WL+YFPP G + + +FG+ VDWRR+F+TT+VN +YD+FIRWQFN L+ +
Sbjct:   44 KGGKTKLVQKTGTGIVRQWNILKRMVPVEEIPQFADPIHWLKYFPPIGIEHMKRFGSGVDWRRAFITTNVNGYYDAFIRWQFNVLREK 131
The following BLAST results are available for this feature:
BLAST of mRNA_H-paniculata_contig21103.5516.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 vs UniRef90)
Total hits: 25
Match NameE-valueIdentityDescription
D7FTL8_ECTSI3.780e-4587.36Leucine--tRNA ligase n=2 Tax=Ectocarpus TaxID=2879... [more]
A0A835YRC2_9STRA1.650e-4170.19Leucine--tRNA ligase n=1 Tax=Tribonema minus TaxID... [more]
A0A7S0GHA7_9STRA3.380e-3564.77Hypothetical protein (Fragment) n=1 Tax=Proboscia ... [more]
A0A7R9UHB7_9STRA6.710e-3568.09Leucine--tRNA ligase n=1 Tax=Pinguiococcus pyrenoi... [more]
A0A1E7EQY5_9STRA1.250e-3465.96Leucine--tRNA ligase n=1 Tax=Fragilariopsis cylind... [more]
A0A7S2PN01_9STRA2.800e-3362.50Leucine--tRNA ligase (Fragment) n=1 Tax=Skeletonem... [more]
B8BYD7_THAPS1.320e-3263.64Leucine--tRNA ligase n=1 Tax=Thalassiosira pseudon... [more]
A0A7S2UVZ9_9STRA1.940e-3269.62Hypothetical protein (Fragment) n=2 Tax=Fibrocapsa... [more]
A0A6U2REQ0_9STRA3.360e-3265.91Leucine--tRNA ligase n=1 Tax=Leptocylindrus danicu... [more]
K0SYU8_THAOC6.160e-3261.36tRNA-synt_1 domain-containing protein n=1 Tax=Thal... [more]

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Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
H-paniculata_contig21103contigH-paniculata_contig21103:3160..3649 -
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 vs UniRef902022-09-19
OGS1.0 of Halopteris paniculata Hal_grac_a_UBK monoicous2021-02-24
Properties
Property NameValue
Taxonomic scopeEukaryota
Seed ortholog score167.5
Seed ortholog evalue3e-39
Seed eggNOG ortholog2880.D7FTL8
Preferred nameLARS
KEGG rclassRC00055,RC00523
KEGG koko:K01869
KEGG ReactionR03657
KEGG Pathwayko00970,map00970
KEGG ModuleM00359,M00360
Hectar predicted targeting categoryother localisation
GOsGO:0000323,GO:0001101,GO:0003674,GO:0003824,GO:0004812,GO:0004819,GO:0004823,GO:0004832,GO:0005096,GO:0005575,GO:0005622,GO:0005623,GO:0005634,GO:0005654,GO:0005737,GO:0005764,GO:0005773,GO:0005783,GO:0005829,GO:0005911,GO:0006082,GO:0006139,GO:0006399,GO:0006412,GO:0006418,GO:0006425,GO:0006429,GO:0006438,GO:0006518,GO:0006520,GO:0006605,GO:0006622,GO:0006623,GO:0006725,GO:0006807,GO:0006810,GO:0006886,GO:0006950,GO:0007034,GO:0007041,GO:0007154,GO:0008047,GO:0008104,GO:0008150,GO:0008152,GO:0008361,GO:0009058,GO:0009059,GO:0009267,GO:0009506,GO:0009507,GO:0009536,GO:0009605,GO:0009719,GO:0009892,GO:0009894,GO:0009895,GO:0009966,GO:0009967,GO:0009987,GO:0009991,GO:0010033,GO:0010243,GO:0010467,GO:0010506,GO:0010507,GO:0010646,GO:0010647,GO:0012505,GO:0015031,GO:0015833,GO:0016043,GO:0016070,GO:0016604,GO:0016874,GO:0016875,GO:0017101,GO:0019222,GO:0019538,GO:0019752,GO:0023051,GO:0023056,GO:0030054,GO:0030234,GO:0030695,GO:0031323,GO:0031324,GO:0031329,GO:0031330,GO:0031667,GO:0031668,GO:0031669,GO:0031974,GO:0031981,GO:0032006,GO:0032008,GO:0032535,GO:0032991,GO:0033036,GO:0033365,GO:0033554,GO:0034198,GO:0034613,GO:0034641,GO:0034645,GO:0034660,GO:0042221,GO:0042594,GO:0042886,GO:0043038,GO:0043039,GO:0043043,GO:0043085,GO:0043087,GO:0043170,GO:0043200,GO:0043201,GO:0043226,GO:0043227,GO:0043229,GO:0043231,GO:0043233,GO:0043436,GO:0043547,GO:0043603,GO:0043604,GO:0044093,GO:0044237,GO:0044238,GO:0044249,GO:0044260,GO:0044267,GO:0044271,GO:0044281,GO:0044422,GO:0044424,GO:0044428,GO:0044444,GO:0044446,GO:0044451,GO:0044464,GO:0045184,GO:0046483,GO:0046907,GO:0048518,GO:0048519,GO:0048522,GO:0048523,GO:0048583,GO:0048584,GO:0050789,GO:0050790,GO:0050794,GO:0050896,GO:0051179,GO:0051234,GO:0051336,GO:0051345,GO:0051641,GO:0051649,GO:0051716,GO:0055044,GO:0060589,GO:0061462,GO:0065007,GO:0065008,GO:0065009,GO:0070013,GO:0070727,GO:0070887,GO:0071229,GO:0071230,GO:0071233,GO:0071310,GO:0071417,GO:0071495,GO:0071496,GO:0071702,GO:0071704,GO:0071705,GO:0071840,GO:0072594,GO:0072665,GO:0072666,GO:0090066,GO:0090304,GO:0098772,GO:0140098,GO:0140101,GO:1901360,GO:1901564,GO:1901566,GO:1901576,GO:1901698,GO:1901699,GO:1901700,GO:1901701,GO:1902531,GO:1902533,GO:1903432,GO:1904263,GO:1990253,GO:1990928
EggNOG free text desc.leucyl-tRNA aminoacylation
EggNOG OGsCOG0495@1,KOG0437@2759
EC6.1.1.4
COG Functional cat.J
Best tax levelEukaryota
Best eggNOG OGNA|NA|NA
BRITEko00000,ko00001,ko00002,ko01000,ko01007,ko03016,ko03029
Exons2
Model size291
Cds size291
Stop1
Start0
Relationships

The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1622929560.1974044-CDS-H-paniculata_contig21103:3159..33681622929560.1974044-CDS-H-paniculata_contig21103:3159..3368Halopteris paniculata Hal_grac_a_UBK monoicousCDSH-paniculata_contig21103 3160..3368 -
1691480914.0729623-CDS-H-paniculata_contig21103:3159..33681691480914.0729623-CDS-H-paniculata_contig21103:3159..3368Halopteris paniculata Hal_grac_a_UBK monoicousCDSH-paniculata_contig21103 3160..3368 -
1622929560.2215345-CDS-H-paniculata_contig21103:3567..36491622929560.2215345-CDS-H-paniculata_contig21103:3567..3649Halopteris paniculata Hal_grac_a_UBK monoicousCDSH-paniculata_contig21103 3568..3649 -
1691480914.0866897-CDS-H-paniculata_contig21103:3567..36491691480914.0866897-CDS-H-paniculata_contig21103:3567..3649Halopteris paniculata Hal_grac_a_UBK monoicousCDSH-paniculata_contig21103 3568..3649 -


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_H-paniculata_contig21103.5516.1prot_H-paniculata_contig21103.5516.1Halopteris paniculata Hal_grac_a_UBK monoicouspolypeptideH-paniculata_contig21103 3160..3649 -


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_H-paniculata_contig21103.5516.1

>prot_H-paniculata_contig21103.5516.1 ID=prot_H-paniculata_contig21103.5516.1|Name=mRNA_H-paniculata_contig21103.5516.1|organism=Halopteris paniculata Hal_grac_a_UBK monoicous|type=polypeptide|length=97bp
KGAKTKLVAKTGGATVRQWDIMKMMVPEDEIPRFTDPLVWLQYFPPRGRK
DVTKFGTAVDWRRSFVTTSVNPFYDSFIRWQFNTLKARTVQYGTVD*
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mRNA from alignment at H-paniculata_contig21103:3160..3649-

Legend: polypeptideCDS
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_H-paniculata_contig21103.5516.1 ID=mRNA_H-paniculata_contig21103.5516.1|Name=mRNA_H-paniculata_contig21103.5516.1|organism=Halopteris paniculata Hal_grac_a_UBK monoicous|type=mRNA|length=490bp|location=Sequence derived from alignment at H-paniculata_contig21103:3160..3649- (Halopteris paniculata Hal_grac_a_UBK monoicous)
AAGGGAGCGAAGACAAAGCTCGTGGCCAAGACTGGCGGTGCTACAGTGCG
GCAGTGGGACATTATGAAGATGATGGTACCTGGTGAGACGGACAGCCTGC
AGCAGGGCGTCGTATGATTTCTTTCCTTACTTCCTTCCTTGCGAAAGAAG
TGAACAGTCATGTTCTGGTGTTGTACTGACCACCTTTGCCCCCATTCCCT
GTTCCCTCTTTATCTCTTTGTCTCTTCGATCTCTCTCCCTCTCTCGCTTT
GTTCGTTCTGTCCGTTGCCTCCTCGTCCCAGAGGACGAAATCCCGCGCTT
CACCGACCCTCTGGTGTGGCTGCAATACTTCCCGCCGCGGGGGCGAAAGG
ACGTGACCAAGTTCGGGACGGCGGTGGACTGGCGGCGTTCGTTCGTCACG
ACGTCGGTGAACCCCTTCTACGACAGCTTCATCCGATGGCAGTTTAATAC
CCTCAAGGCACGTACTGTACAGTACGGCACTGTGGATTAG
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Coding sequence (CDS) from alignment at H-paniculata_contig21103:3160..3649-

>mRNA_H-paniculata_contig21103.5516.1 ID=mRNA_H-paniculata_contig21103.5516.1|Name=mRNA_H-paniculata_contig21103.5516.1|organism=Halopteris paniculata Hal_grac_a_UBK monoicous|type=CDS|length=582bp|location=Sequence derived from alignment at H-paniculata_contig21103:3160..3649- (Halopteris paniculata Hal_grac_a_UBK monoicous)
AAGGGAGCGAAGACAAAGCTCGTGGCCAAGACTGGCGGTGCTACAGTGCG
GCAGTGGGACATTATGAAGATGATGGTACCTGAAGGGAGCGAAGACAAAG
CTCGTGGCCAAGACTGGCGGTGCTACAGTGCGGCAGTGGGACATTATGAA
GATGATGGTACCTGAGGACGAAATCCCGCGCTTCACCGACCCTCTGGTGT
GGCTGCAATACTTCCCGCCGCGGGGGCGAAAGGACGTGACCAAGTTCGGG
ACGGCGGTGGACTGGCGGCGTTCGTTCGTCACGACGTCGGTGAACCCCTT
CTACGACAGCTTCATCCGATGGCAGTTTAATACCCTCAAGGCACGTACTG
TACAGTACGGCACTGTGGATTAGAGGACGAAATCCCGCGCTTCACCGACC
CTCTGGTGTGGCTGCAATACTTCCCGCCGCGGGGGCGAAAGGACGTGACC
AAGTTCGGGACGGCGGTGGACTGGCGGCGTTCGTTCGTCACGACGTCGGT
GAACCCCTTCTACGACAGCTTCATCCGATGGCAGTTTAATACCCTCAAGG
CACGTACTGTACAGTACGGCACTGTGGATTAG
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