prot_H-paniculata_contig21058.5504.1 (polypeptide) Halopteris paniculata Hal_grac_a_UBK monoicous

You are viewing a polypeptide, more information available on the corresponding mRNA page

Overview
NamemRNA_H-paniculata_contig21058.5504.1
Unique Nameprot_H-paniculata_contig21058.5504.1
Typepolypeptide
OrganismHalopteris paniculata Hal_grac_a_UBK monoicous (Halopteris paniculata Hal_grac_a_UBK monoicous)
Sequence length43
Homology
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BLAST of mRNA_H-paniculata_contig21058.5504.1 vs. uniprot
Match: D8LL22_ECTSI (RING-type domain-containing protein n=2 Tax=Ectocarpus TaxID=2879 RepID=D8LL22_ECTSI)

HSP 1 Score: 58.2 bits (139), Expect = 1.040e-8
Identity = 25/38 (65.79%), Postives = 32/38 (84.21%), Query Frame = 0 
Query:    1 LVSARPRDACVPLYNSGQMEDGVVALVERGKCNFTEKV 38
            LV A+PRD CVPL+N+  M++G +ALVERG CNFT+KV
Sbjct:  142 LVRAKPRDGCVPLHNA--MDEGAIALVERGTCNFTQKV 177
The following BLAST results are available for this feature:
BLAST of mRNA_H-paniculata_contig21058.5504.1 vs. uniprot
Analysis Date: 2022-09-16 (Diamond blastp: OGS1.0 vs UniRef90)
Total hits: 1
Match NameE-valueIdentityDescription
D8LL22_ECTSI1.040e-865.79RING-type domain-containing protein n=2 Tax=Ectoca... [more]
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InterPro
Analysis Name: InterProScan on OGS1.0
Date Performed: 2022-09-29
IPR TermIPR DescriptionSourceSource TermSource DescriptionAlignment
NoneNo IPR availableGENE3D3.50.30.30coord: 1..41
e-value: 1.1E-7
score: 33.8

Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
H-paniculata_contig21058contigH-paniculata_contig21058:713..841 -
Analyses
This polypeptide is derived from or has results from the following analyses
Analysis NameDate Performed
InterProScan on OGS1.02022-09-29
Diamond blastp: OGS1.0 vs UniRef902022-09-16
OGS1.0 of Halopteris paniculata Hal_grac_a_UBK monoicous2021-02-24
Relationships

This polypeptide derives from the following mRNA feature(s):

Feature NameUnique NameSpeciesTypePosition
mRNA_H-paniculata_contig21058.5504.1mRNA_H-paniculata_contig21058.5504.1Halopteris paniculata Hal_grac_a_UBK monoicousmRNAH-paniculata_contig21058 713..841 -


Sequences
The following sequences are available for this feature:

polypeptide sequence

>prot_H-paniculata_contig21058.5504.1 ID=prot_H-paniculata_contig21058.5504.1|Name=mRNA_H-paniculata_contig21058.5504.1|organism=Halopteris paniculata Hal_grac_a_UBK monoicous|type=polypeptide|length=43bp
LVSARPRDACVPLYNSGQMEDGVVALVERGKCNFTEKVRKRF*
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