mRNA_H-paniculata_contig21058.5504.1 (mRNA) Halopteris paniculata Hal_grac_a_UBK monoicous

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_H-paniculata_contig21058.5504.1
Unique NamemRNA_H-paniculata_contig21058.5504.1
TypemRNA
OrganismHalopteris paniculata Hal_grac_a_UBK monoicous (Halopteris paniculata Hal_grac_a_UBK monoicous)
Homology
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BLAST of mRNA_H-paniculata_contig21058.5504.1 vs. uniprot
Match: D8LL22_ECTSI (RING-type domain-containing protein n=2 Tax=Ectocarpus TaxID=2879 RepID=D8LL22_ECTSI)

HSP 1 Score: 58.2 bits (139), Expect = 1.040e-8
Identity = 25/38 (65.79%), Postives = 32/38 (84.21%), Query Frame = 1 
Query:    1 LVSARPRDACVPLYNSGQMEDGVVALVERGKCNFTEKV 114
            LV A+PRD CVPL+N+  M++G +ALVERG CNFT+KV
Sbjct:  142 LVRAKPRDGCVPLHNA--MDEGAIALVERGTCNFTQKV 177
The following BLAST results are available for this feature:
BLAST of mRNA_H-paniculata_contig21058.5504.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 vs UniRef90)
Total hits: 1
Match NameE-valueIdentityDescription
D8LL22_ECTSI1.040e-865.79RING-type domain-containing protein n=2 Tax=Ectoca... [more]
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Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
H-paniculata_contig21058contigH-paniculata_contig21058:713..841 -
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 vs UniRef902022-09-19
OGS1.0 of Halopteris paniculata Hal_grac_a_UBK monoicous2021-02-24
Properties
Property NameValue
Hectar predicted targeting categoryno signal peptide or anchor
Exons1
Model size129
Cds size129
Stop1
Start0
Relationships

The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1622929557.7564688-CDS-H-paniculata_contig21058:712..8411622929557.7564688-CDS-H-paniculata_contig21058:712..841Halopteris paniculata Hal_grac_a_UBK monoicousCDSH-paniculata_contig21058 713..841 -
1691480912.8804147-CDS-H-paniculata_contig21058:712..8411691480912.8804147-CDS-H-paniculata_contig21058:712..841Halopteris paniculata Hal_grac_a_UBK monoicousCDSH-paniculata_contig21058 713..841 -


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_H-paniculata_contig21058.5504.1prot_H-paniculata_contig21058.5504.1Halopteris paniculata Hal_grac_a_UBK monoicouspolypeptideH-paniculata_contig21058 713..841 -


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_H-paniculata_contig21058.5504.1

>prot_H-paniculata_contig21058.5504.1 ID=prot_H-paniculata_contig21058.5504.1|Name=mRNA_H-paniculata_contig21058.5504.1|organism=Halopteris paniculata Hal_grac_a_UBK monoicous|type=polypeptide|length=43bp
LVSARPRDACVPLYNSGQMEDGVVALVERGKCNFTEKVRKRF*
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mRNA from alignment at H-paniculata_contig21058:713..841-

Legend: CDSpolypeptide
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_H-paniculata_contig21058.5504.1 ID=mRNA_H-paniculata_contig21058.5504.1|Name=mRNA_H-paniculata_contig21058.5504.1|organism=Halopteris paniculata Hal_grac_a_UBK monoicous|type=mRNA|length=129bp|location=Sequence derived from alignment at H-paniculata_contig21058:713..841- (Halopteris paniculata Hal_grac_a_UBK monoicous)
CTGGTGAGCGCTAGGCCGCGAGACGCCTGCGTTCCTCTATACAACTCCGG
TCAGATGGAGGACGGCGTGGTTGCCCTGGTGGAGAGGGGGAAGTGCAATT
TTACGGAGAAGGTAAGGAAGCGATTTTAG
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Coding sequence (CDS) from alignment at H-paniculata_contig21058:713..841-

>mRNA_H-paniculata_contig21058.5504.1 ID=mRNA_H-paniculata_contig21058.5504.1|Name=mRNA_H-paniculata_contig21058.5504.1|organism=Halopteris paniculata Hal_grac_a_UBK monoicous|type=CDS|length=258bp|location=Sequence derived from alignment at H-paniculata_contig21058:713..841- (Halopteris paniculata Hal_grac_a_UBK monoicous)
CTGGTGAGCGCTAGGCCGCGAGACGCCTGCGTTCCTCTATACAACTCCGG
TCAGATGGAGGACGGCGTGGTTGCCCTGGTGGAGAGGGGGAAGTGCAATT
TTACGGAGAAGGTAAGGAAGCGATTTTAGCTGGTGAGCGCTAGGCCGCGA
GACGCCTGCGTTCCTCTATACAACTCCGGTCAGATGGAGGACGGCGTGGT
TGCCCTGGTGGAGAGGGGGAAGTGCAATTTTACGGAGAAGGTAAGGAAGC
GATTTTAG
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