mRNA_H-paniculata_contig2100.5483.1 (mRNA) Halopteris paniculata Hal_grac_a_UBK monoicous

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_H-paniculata_contig2100.5483.1
Unique NamemRNA_H-paniculata_contig2100.5483.1
TypemRNA
OrganismHalopteris paniculata Hal_grac_a_UBK monoicous (Halopteris paniculata Hal_grac_a_UBK monoicous)
Homology
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BLAST of mRNA_H-paniculata_contig2100.5483.1 vs. uniprot
Match: D7FKB5_ECTSI (Uncharacterized protein n=1 Tax=Ectocarpus siliculosus TaxID=2880 RepID=D7FKB5_ECTSI)

HSP 1 Score: 138 bits (348), Expect = 8.170e-32
Identity = 128/312 (41.03%), Postives = 161/312 (51.60%), Query Frame = 1 
Query:    1 RCASPSLDIRLPDSLAGLTT--GRRNNTGHNANRGEAHGHARTITTRGPLITEISSPSPREKATSDEEGGSGRVGTRKQGAAERHSNS--GGDQGLARKPKKKGGAGAGAGNRQPVVTKGFLNKLGGGGKGKESVTPLYPPTGSENGAEPGGFAKLMGRCKVVDTSSMNKDQIDAAMRAHAGGSKSLNSKAATGSSSL----ASSSKGKTTAGSRPAVRKGFLESGGGNS-LYGEEGSREGGGGLGRKGKNIDREFERLVTEADPDMVN----QKSEQKISDPLAEQLAQLATILGPGSSFPGTQRGSSSAS 897
            R AS + DI LP +LAGL +  G R  T +  N G           RGPLI+EI      + +T+    G G    R+     R  +   G + G+ RK  KK           PVV KGFL+    GGK      PLYPP GSENGAEP  +AKLM RCKVVDT   +K+++DAAM+AHAGG   L   + T          +   G+  A S  AV+KGFL +G G   + GEEG   G    GR  K +DRE+ERLV  ADP+M +    + S     DP+ EQLAQLA ILGP +  P T  G   A+
Sbjct:  369 RNASATRDILLPGALAGLASDSGDRKRTENGLNEGR----------RGPLISEIVP----DTSTTTARAGDGGEALRQVSDDSRAVDGCQGQEPGVERKVGKKSA---------PVVKKGFLSSFKVGGKAGLERAPLYPPGGSENGAEPSAYAKLMSRCKVVDTRDHSKEEMDAAMKAHAGGGAPLRPASQTPEPXXXXXXTAGRAGRKPAASA-AVKKGFLGAGVGRGRIKGEEGGGRGDA-RGRSSK-VDREYERLVALADPEMGDGTGGKPSHGGEEDPMTEQLAQLAKILGPAAPLPETPFGPGCAT 654
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BLAST of mRNA_H-paniculata_contig2100.5483.1 vs. uniprot
Match: A0A6H5KE96_9PHAE (Uncharacterized protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5KE96_9PHAE)

HSP 1 Score: 126 bits (316), Expect = 1.140e-27
Identity = 123/313 (39.30%), Postives = 156/313 (49.84%), Query Frame = 1 
Query:    7 ASPSLDIRLPDSLAGLTT--GRRNNTGHNANRGEAHGHARTITTRGPLITEI----SSPSPREKATSDEEGGSGRVGTRKQGAAERHSNSGGDQGLARKPKKKGGAGAGAGNRQPVVTKGFLNKLG-GGGKGKESVTPLYPPTGSENGAEPGGFAKLMGRCKVVDTSSMNKDQIDAAMRAHAGGSKSLNSKAATGSSS-----LASSSKGKTTAGSRPAVRKGFLESGGGNSLYGEEGSREGGGGLGRKGKNIDREFERLVTEADPDMVN----QKSEQKISDPLAEQLAQLATILGPGSSFPGTQRGSSSAS 897
            A  + DI LP +LAGL +  G R    +  N G           RGPLI+EI    S+P+P           +G  G      ++      G  G     K+K G     G   PVV KGFL+    GGGKG+E   PLYPP GSENGAEP  +AKLM RCKVVDT   +K+++DAAM+AHAGG   L   + T  S       A  ++ K  A +  AV+K F  +G G      E         GR  K +DRE+ERLV  ADP+M +    + S     DP+ EQLAQLA ILGP +  P T  G   A+
Sbjct:  317 ALATRDILLPGALAGLASDSGDRKRRENRLNEGR----------RGPLISEIVPDTSTPAP-----------AGDEGEALSHVSDNSKVFDGCPGQEPGAKRKVG-----GKSAPVVKKGFLSSSKVGGGKGRERA-PLYPPGGSENGAEPSAYAKLMSRCKVVDTRDHSKEEVDAAMKAHAGGGAPLRPASQTPESKPSPTPTAGCARRKPAASA--AVKKRFHGAGNGRGEVKGEXXXXXXXXRGRSSK-VDREYERLVALADPEMGDGAGGKSSHGGEDDPMTEQLAQLAKILGPAAPLPETPLGPGCAT 599
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BLAST of mRNA_H-paniculata_contig2100.5483.1 vs. uniprot
Match: A0A8J2X7L2_9STRA (Hypothetical protein n=2 Tax=Pelagomonas calceolata TaxID=35677 RepID=A0A8J2X7L2_9STRA)

HSP 1 Score: 58.2 bits (139), Expect = 1.930e-5
Identity = 57/183 (31.15%), Postives = 87/183 (47.54%), Query Frame = 1 
Query:  325 RQPVVTKGFLNKLGGGGKGKESVTPLYPPTGSENGA--EPGGFAKLMGRCKVVDTSSMNKDQIDAAMRAHAGGSKSLNSKAATGSSSL---ASSSKGKTTAGSRPA--------VRKGFLESGGGNSLYGEEGSREGGGGLGRKGKNIDREFERLVTEADPDMVNQKSEQKISDPLAEQLAQL 834
            ++P V KGFL         K     LYP +GSE G   + G +++ M +CKVVDT++M+K+++DAA R +AG          TG+ S    A     K T    PA         +KGFL S   +SLY E  S+       ++    + EF+  + E DP+  N    + + +   + +AQL
Sbjct:  351 KKPAVKKGFLRTA------KARKAALYP-SGSEQGESQKEGTYSRFMSKCKVVDTTTMSKEEVDAATRQYAG----------TGTVSQPPQAPPLPSKNTTAKPPAPPSKAFDGAKKGFLNSSK-SSLYDENESK-------KRTPEYEPEFDAAMAELDPEFSNAHKNEDVGNDEDDTIAQL 508
The following BLAST results are available for this feature:
BLAST of mRNA_H-paniculata_contig2100.5483.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 vs UniRef90)
Total hits: 3
Match NameE-valueIdentityDescription
D7FKB5_ECTSI8.170e-3241.03Uncharacterized protein n=1 Tax=Ectocarpus silicul... [more]
A0A6H5KE96_9PHAE1.140e-2739.30Uncharacterized protein n=1 Tax=Ectocarpus sp. CCA... [more]
A0A8J2X7L2_9STRA1.930e-531.15Hypothetical protein n=2 Tax=Pelagomonas calceolat... [more]
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Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
H-paniculata_contig2100contigH-paniculata_contig2100:389..2935 +
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 vs UniRef902022-09-19
OGS1.0 of Halopteris paniculata Hal_grac_a_UBK monoicous2021-02-24
Properties
Property NameValue
Taxonomic scopeEukaryota
Seed ortholog score151.8
Seed ortholog evalue7.2e-34
Seed eggNOG ortholog2880.D7FKB5
Hectar predicted targeting categoryother localisation
EggNOG free text desc.pre-RNA processing PIH1/Nop17
EggNOG OGs2DKB8@1,2S62G@2759
Ec32 ortholog descriptionPIH1 family
Ec32 orthologEc-05_005580.1
COG Functional cat.S
Best tax levelEukaryota
Best eggNOG OGNA|NA|NA
Exons3
Model size1237
Cds size1236
Stop0
Start0
Relationships

The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_H-paniculata_contig2100.5483.1prot_H-paniculata_contig2100.5483.1Halopteris paniculata Hal_grac_a_UBK monoicouspolypeptideH-paniculata_contig2100 389..2934 +


The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1622929555.1076024-CDS-H-paniculata_contig2100:388..8921622929555.1076024-CDS-H-paniculata_contig2100:388..892Halopteris paniculata Hal_grac_a_UBK monoicousCDSH-paniculata_contig2100 389..892 +
1691480911.7592976-CDS-H-paniculata_contig2100:388..8921691480911.7592976-CDS-H-paniculata_contig2100:388..892Halopteris paniculata Hal_grac_a_UBK monoicousCDSH-paniculata_contig2100 389..892 +
1622929555.1239865-CDS-H-paniculata_contig2100:1606..18851622929555.1239865-CDS-H-paniculata_contig2100:1606..1885Halopteris paniculata Hal_grac_a_UBK monoicousCDSH-paniculata_contig2100 1607..1885 +
1691480911.7717571-CDS-H-paniculata_contig2100:1606..18851691480911.7717571-CDS-H-paniculata_contig2100:1606..1885Halopteris paniculata Hal_grac_a_UBK monoicousCDSH-paniculata_contig2100 1607..1885 +
1622929555.1433544-CDS-H-paniculata_contig2100:2481..29341622929555.1433544-CDS-H-paniculata_contig2100:2481..2934Halopteris paniculata Hal_grac_a_UBK monoicousCDSH-paniculata_contig2100 2482..2934 +
1691480911.7820244-CDS-H-paniculata_contig2100:2481..29341691480911.7820244-CDS-H-paniculata_contig2100:2481..2934Halopteris paniculata Hal_grac_a_UBK monoicousCDSH-paniculata_contig2100 2482..2934 +


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_H-paniculata_contig2100.5483.1

>prot_H-paniculata_contig2100.5483.1 ID=prot_H-paniculata_contig2100.5483.1|Name=mRNA_H-paniculata_contig2100.5483.1|organism=Halopteris paniculata Hal_grac_a_UBK monoicous|type=polypeptide|length=412bp
RCASPSLDIRLPDSLAGLTTGRRNNTGHNANRGEAHGHARTITTRGPLIT
EISSPSPREKATSDEEGGSGRVGTRKQGAAERHSNSGGDQGLARKPKKKG
GAGAGAGNRQPVVTKGFLNKLGGGGKGKESVTPLYPPTGSENGAEPGGFA
KLMGRCKVVDTSSMNKDQIDAAMRAHAGGSKSLNSKAATGSSSLASSSKG
KTTAGSRPAVRKGFLESGGGNSLYGEEGSREGGGGLGRKGKNIDREFERL
VTEADPDMVNQKSEQKISDPLAEQLAQLATILGPGSSFPGTQRGSSSASG
SSSSPSPAESAPSKVKPSTATTNSATETAVKPLVVNGTKSETSNAAVIAP
TSTIVDGACSPRGENGANPTNRTKSCTENNPGTGVSGMLEKDRSPTTTST
LTCFAPGDEATP
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mRNA from alignment at H-paniculata_contig2100:389..2935+

Legend: polypeptideCDS
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_H-paniculata_contig2100.5483.1 ID=mRNA_H-paniculata_contig2100.5483.1|Name=mRNA_H-paniculata_contig2100.5483.1|organism=Halopteris paniculata Hal_grac_a_UBK monoicous|type=mRNA|length=2547bp|location=Sequence derived from alignment at H-paniculata_contig2100:389..2935+ (Halopteris paniculata Hal_grac_a_UBK monoicous)
AGATGTGCATCACCCTCGCTTGATATACGCCTTCCAGATTCTCTTGCAGG
GCTCACAACCGGGCGTAGAAACAACACCGGACACAACGCAAATAGAGGAG
AAGCACATGGTCATGCCCGGACAATAACCACCCGCGGTCCGCTGATCACA
GAAATTTCCTCGCCGTCGCCCCGCGAAAAAGCGACGTCAGACGAGGAAGG
GGGAAGCGGTAGAGTGGGAACGCGGAAGCAGGGCGCAGCAGAACGGCATA
GTAACAGTGGAGGCGACCAAGGGCTGGCAAGGAAGCCGAAGAAGAAGGGA
GGTGCCGGTGCGGGTGCGGGTAATCGGCAACCGGTGGTCACCAAAGGTTT
CCTGAATAAGTTGGGAGGTGGAGGGAAGGGAAAGGAGAGTGTCACGCCCT
TGTATCCCCCGACGGGTTCGGAGAACGGAGCGGAGCCCGGTGGGTTCGCG
AAGCTGATGGGCCGTTGCAAGGTGGTGGACACGAGCTCGATGAACAAGGA
TCAGGTTAGCGCTTGCTCTTGAGTGAAGTTATGTATGTTGCATTTAAACG
GGGCAGTCGGCGTCTTCACAGTTTCGCGTCATGTCCGTAATCTGTATGTA
CGTTCTGGCGTAACAAAATGCTCCGACAGGGGCAACAAATCATAGCAATA
CATCTTCTTGGGACTTCATACCCAACTACAATGGAGTTATCTACCAAAAA
AGTTGTTTACCATACATATCAAATGAACAAGAAAATGTAGAGGTCACAAT
ATTTTTTGTATCCTTGCGCCCCGTATGTCGCTCTACTGTGGTCTACTTCT
CGATCTTTAAAGCATACAAGCACTACCTACGTGCGATCGGGGAAAATAAA
CAGGAGTAAAATCCGACGGGGCGGGGAGGGACACACGGCCCTCCTTCTCC
TTGCAAACCATTGCACAGGCTTCGGTCGACACGCGAACTTTCCTCCCCAA
TCTTTGCTGCGATGGTTGATGAAAGGCTGACATGTCGACATCCCTCAGCG
TCAAGAATAAAACGGTGTTCAGCTCTGAAGAAGAACAACGGCGTGCATAA
CCTAACTCAGCTTTAAATAGAAACATGCTTAAACCTCAAAGCTGGGTGGG
TTGAATATTCTGTGGCAAGGTGGTTAACTGCAGTATTCCTACTTGCCAAG
ACTACAGGTGAAAACCCTTCAGCACCCCCCCCCGCCGTCCCTAACCCGAA
CCTTGTCTGTCGTGACAGATCGACGCAGCAATGCGAGCCCACGCCGGGGG
TTCGAAATCTTTGAATTCTAAGGCTGCAACCGGTAGTAGTTCCCTCGCAT
CTTCTTCGAAGGGAAAAACTACCGCTGGTAGCCGACCTGCAGTACGAAAG
GGGTTTCTAGAGTCCGGCGGAGGCAATTCGCTGTACGGGGAAGAGGGGAG
TCGCGAGGGCGGCGGCGGTCTAGGTAGGAAGGGGAAAAATATTGATCGAG
AATTTGAACGCCTTGTAACGGAAGCGGACCCCGACATGGTAAACCAGGTA
AGATATGCATACCTGCCCCTGTGGCATATTTTTCAGGGCGTTTCACTAGA
CTCCACGGAGTTAGAAGGGCGTTCCCGTCCCTTGAGAGGGTTCTGTGGTC
TGGCGTTTAAAAGGCTTGGTATTTTTTGCGTGTTCGCGATATTTTCCCTT
TGAGCCGAGTATGAGCTCTTCCCACTCTGTGTTAACGTGTGTCGAGGTTC
GACTCATTTTCGGTAGCCCACCGTCCTTGTGACCGATTGATCACTCGATC
GATTTCTCTGGGTACATTTAGCAATTGCGTGTTTTTCCTTCAATGGTTTG
TTAGCCGGCTCCCCGCCGAGTCACTGCTAGTTTCTTCTCTCCAGCCCAGC
TGGACTCGATTGCCGAGGTTTCGACTTACCCACTAATACTCAAGGGAGGG
AGGGGGTAATAGTATACCCAGTATTTCATATTAGTGAACGAGGGGCTGAC
CACCCTCCAATAAGGTTGAAATATGTCTTTGATCTGGTTGAGCTGGGCAT
CCAGACTTCTTGAAAAAAATAGCTGCAAATATCTCCAAGTTTCACATACC
AAAACATGCGCTGATCCCCGCCCCCGTCGCGTGACGTGCTCAGAAATCGG
AGCAAAAAATATCGGACCCACTAGCTGAACAACTTGCTCAGCTGGCAACC
ATCCTGGGGCCAGGGTCTTCCTTCCCCGGCACGCAACGTGGTTCCTCAAG
CGCTTCGGGTAGTAGCTCGTCCCCGTCTCCGGCGGAGAGTGCTCCTTCAA
AAGTGAAACCGTCAACAGCCACAACGAATTCAGCAACAGAAACCGCCGTA
AAACCTCTAGTAGTCAATGGTACAAAAAGCGAGACATCTAATGCAGCTGT
GATAGCACCGACGAGCACCATCGTCGATGGCGCTTGTTCTCCCCGAGGAG
AAAATGGCGCAAACCCCACCAATAGGACCAAGAGCTGCACGGAGAACAAC
CCAGGAACCGGGGTAAGCGGAATGTTGGAAAAGGACAGGAGTCCGACGAC
AACGTCGACGTTGACCTGTTTTGCACCAGGGGACGAAGCAACGCCCA
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Coding sequence (CDS) from alignment at H-paniculata_contig2100:389..2935+

>mRNA_H-paniculata_contig2100.5483.1 ID=mRNA_H-paniculata_contig2100.5483.1|Name=mRNA_H-paniculata_contig2100.5483.1|organism=Halopteris paniculata Hal_grac_a_UBK monoicous|type=CDS|length=2472bp|location=Sequence derived from alignment at H-paniculata_contig2100:389..2935+ (Halopteris paniculata Hal_grac_a_UBK monoicous)
AGATGTGCATCACCCTCGCTTGATATACGCCTTCCAGATTCTCTTGCAGG
GCTCACAACCGGGCGTAGAAACAACACCGGACACAACGCAAATAGAGGAG
AAGCACATGGTCATGCCCGGACAATAACCACCCGCGGTCCGCTGATCACA
GAAATTTCCTCGCCGTCGCCCCGCGAAAAAGCGACGTCAGACGAGGAAGG
GGGAAGCGGTAGAGTGGGAACGCGGAAGCAGGGCGCAGCAGAACGGCATA
GTAACAGTGGAGGCGACCAAGGGCTGGCAAGGAAGCCGAAGAAGAAGGGA
GGTGCCGGTGCGGGTGCGGGTAATCGGCAACCGGTGGTCACCAAAGGTTT
CCTGAATAAGTTGGGAGGTGGAGGGAAGGGAAAGGAGAGTGTCACGCCCT
TGTATCCCCCGACGGGTTCGGAGAACGGAGCGGAGCCCGGTGGGTTCGCG
AAGCTGATGGGCCGTTGCAAGGTGGTGGACACGAGCTCGATGAACAAGGA
TCAGAGATGTGCATCACCCTCGCTTGATATACGCCTTCCAGATTCTCTTG
CAGGGCTCACAACCGGGCGTAGAAACAACACCGGACACAACGCAAATAGA
GGAGAAGCACATGGTCATGCCCGGACAATAACCACCCGCGGTCCGCTGAT
CACAGAAATTTCCTCGCCGTCGCCCCGCGAAAAAGCGACGTCAGACGAGG
AAGGGGGAAGCGGTAGAGTGGGAACGCGGAAGCAGGGCGCAGCAGAACGG
CATAGTAACAGTGGAGGCGACCAAGGGCTGGCAAGGAAGCCGAAGAAGAA
GGGAGGTGCCGGTGCGGGTGCGGGTAATCGGCAACCGGTGGTCACCAAAG
GTTTCCTGAATAAGTTGGGAGGTGGAGGGAAGGGAAAGGAGAGTGTCACG
CCCTTGTATCCCCCGACGGGTTCGGAGAACGGAGCGGAGCCCGGTGGGTT
CGCGAAGCTGATGGGCCGTTGCAAGGTGGTGGACACGAGCTCGATGAACA
AGGATCAGATCGACGCAGCAATGCGAGCCCACGCCGGGGGTTCGAAATCT
TTGAATTCTAAGGCTGCAACCGGTAGTAGTTCCCTCGCATCTTCTTCGAA
GGGAAAAACTACCGCTGGTAGCCGACCTGCAGTACGAAAGGGGTTTCTAG
AGTCCGGCGGAGGCAATTCGCTGTACGGGGAAGAGGGGAGTCGCGAGGGC
GGCGGCGGTCTAGGTAGGAAGGGGAAAAATATTGATCGAGAATTTGAACG
CCTTGTAACGGAAGCGGACCCCGACATGGTAAACCAGATCGACGCAGCAA
TGCGAGCCCACGCCGGGGGTTCGAAATCTTTGAATTCTAAGGCTGCAACC
GGTAGTAGTTCCCTCGCATCTTCTTCGAAGGGAAAAACTACCGCTGGTAG
CCGACCTGCAGTACGAAAGGGGTTTCTAGAGTCCGGCGGAGGCAATTCGC
TGTACGGGGAAGAGGGGAGTCGCGAGGGCGGCGGCGGTCTAGGTAGGAAG
GGGAAAAATATTGATCGAGAATTTGAACGCCTTGTAACGGAAGCGGACCC
CGACATGGTAAACCAGAAATCGGAGCAAAAAATATCGGACCCACTAGCTG
AACAACTTGCTCAGCTGGCAACCATCCTGGGGCCAGGGTCTTCCTTCCCC
GGCACGCAACGTGGTTCCTCAAGCGCTTCGGGTAGTAGCTCGTCCCCGTC
TCCGGCGGAGAGTGCTCCTTCAAAAGTGAAACCGTCAACAGCCACAACGA
ATTCAGCAACAGAAACCGCCGTAAAACCTCTAGTAGTCAATGGTACAAAA
AGCGAGACATCTAATGCAGCTGTGATAGCACCGACGAGCACCATCGTCGA
TGGCGCTTGTTCTCCCCGAGGAGAAAATGGCGCAAACCCCACCAATAGGA
CCAAGAGCTGCACGGAGAACAACCCAGGAACCGGGGTAAGCGGAATGTTG
GAAAAGGACAGGAGTCCGACGACAACGTCGACGTTGACCTGTTTTGCACC
AGGGGACGAAGCAACGCCCAAATCGGAGCAAAAAATATCGGACCCACTAG
CTGAACAACTTGCTCAGCTGGCAACCATCCTGGGGCCAGGGTCTTCCTTC
CCCGGCACGCAACGTGGTTCCTCAAGCGCTTCGGGTAGTAGCTCGTCCCC
GTCTCCGGCGGAGAGTGCTCCTTCAAAAGTGAAACCGTCAACAGCCACAA
CGAATTCAGCAACAGAAACCGCCGTAAAACCTCTAGTAGTCAATGGTACA
AAAAGCGAGACATCTAATGCAGCTGTGATAGCACCGACGAGCACCATCGT
CGATGGCGCTTGTTCTCCCCGAGGAGAAAATGGCGCAAACCCCACCAATA
GGACCAAGAGCTGCACGGAGAACAACCCAGGAACCGGGGTAAGCGGAATG
TTGGAAAAGGACAGGAGTCCGACGACAACGTCGACGTTGACCTGTTTTGC
ACCAGGGGACGAAGCAACGCCC
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