mRNA_H-paniculata_contig20747.5388.1 (mRNA) Halopteris paniculata Hal_grac_a_UBK monoicous

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_H-paniculata_contig20747.5388.1
Unique NamemRNA_H-paniculata_contig20747.5388.1
TypemRNA
OrganismHalopteris paniculata Hal_grac_a_UBK monoicous (Halopteris paniculata Hal_grac_a_UBK monoicous)
Homology
BLAST of mRNA_H-paniculata_contig20747.5388.1 vs. uniprot
Match: A0A6H5L0H6_9PHAE (CoA_binding domain-containing protein n=2 Tax=Ectocarpus TaxID=2879 RepID=A0A6H5L0H6_9PHAE)

HSP 1 Score: 123 bits (308), Expect = 3.760e-34
Identity = 61/77 (79.22%), Postives = 67/77 (87.01%), Query Frame = 1
Query:   10 MNALVSTFLAADRFAVVGASANPTKFGNKVLRTYLWKEKAVTPINPREEEIEGQKCVKSLSELVQPQDVAVSVVTPP 240
            MN LV  FLAADRFAVVGAS N +KFGNKVLR YLW+EK V P+NPREEEIEG+KCVKSLS+L  PQDV+VSVVTPP
Sbjct:    1 MNTLVRNFLAADRFAVVGASTNRSKFGNKVLRCYLWREKTVFPVNPREEEIEGKKCVKSLSDLADPQDVSVSVVTPP 77          
BLAST of mRNA_H-paniculata_contig20747.5388.1 vs. uniprot
Match: A0A0H2S0Q8_9AGAM (NAD(P)-binding protein n=1 Tax=Schizopora paradoxa TaxID=27342 RepID=A0A0H2S0Q8_9AGAM)

HSP 1 Score: 84.3 bits (207), Expect = 6.870e-19
Identity = 42/80 (52.50%), Postives = 58/80 (72.50%), Query Frame = 1
Query:    1 LRSMNALVSTFLAADRFAVVGASANPTKFGNKVLRTYLWKEKAVTPINPREEEIEGQKCVKSLSELVQPQDVAVSVVTPP 240
            +R++  +  TFL+A RFAVVGAS +  KFG KVLR Y  +E  VTP++P+E+E+EG K V  LSEL  P + +VS++TPP
Sbjct:    1 MRTLAEIQRTFLSAPRFAVVGASKDQAKFGTKVLRWYQARELDVTPVHPKEQELEGVKTVSQLSELPSPSETSVSIITPP 80          
BLAST of mRNA_H-paniculata_contig20747.5388.1 vs. uniprot
Match: A0A067PLC4_9AGAM (CoA_binding domain-containing protein n=1 Tax=Jaapia argillacea MUCL 33604 TaxID=933084 RepID=A0A067PLC4_9AGAM)

HSP 1 Score: 82.8 bits (203), Expect = 1.860e-18
Identity = 39/80 (48.75%), Postives = 59/80 (73.75%), Query Frame = 1
Query:    1 LRSMNALVSTFLAADRFAVVGASANPTKFGNKVLRTYLWKEKAVTPINPREEEIEGQKCVKSLSELVQPQDVAVSVVTPP 240
            + S   +  TFL+A RFAVVGAS + +K+G KVLR YL + K VTP++P+E+E+EG   V++L++L  P + A+S++TPP
Sbjct:    1 MASAREIQKTFLSAPRFAVVGASKDASKYGTKVLRWYLARNKPVTPVHPKEDELEGIATVRTLADLPSPSETAISIITPP 80          
BLAST of mRNA_H-paniculata_contig20747.5388.1 vs. uniprot
Match: A0A836CBV2_9STRA (CoA-binding domain-containing protein n=1 Tax=Tribonema minus TaxID=303371 RepID=A0A836CBV2_9STRA)

HSP 1 Score: 82.4 bits (202), Expect = 3.450e-18
Identity = 45/74 (60.81%), Postives = 56/74 (75.68%), Query Frame = 1
Query:   22 VSTFLAADRFAVVGASANPTKFGNKVLRTYLWKEKAVTPINPREEEIEGQKCVKSLSELVQPQ-DVAVSVVTPP 240
            V  FLA  R+AVVGAS + TK+GNK LR YL  ++AVTP+NP+   IEG  CV SLS+L +P+ +VAVSVVTPP
Sbjct:   14 VVAFLAHPRYAVVGASQDRTKYGNKCLRCYLQHDRAVTPVNPKAMAIEGVACVASLSQLPEPRSEVAVSVVTPP 87          
BLAST of mRNA_H-paniculata_contig20747.5388.1 vs. uniprot
Match: W7TQK0_9STRA (Binding domain protein n=2 Tax=Nannochloropsis gaditana TaxID=72520 RepID=W7TQK0_9STRA)

HSP 1 Score: 80.9 bits (198), Expect = 9.580e-18
Identity = 43/75 (57.33%), Postives = 52/75 (69.33%), Query Frame = 1
Query:   16 ALVSTFLAADRFAVVGASANPTKFGNKVLRTYLWKEKAVTPINPREEEIEGQKCVKSLSELVQPQDVAVSVVTPP 240
            A +  FL+A  FAVVGAS N  KFGNKVLR Y+   K++TPINP+E  IEG   + +LS L  P + AVSVVTPP
Sbjct:    4 AKIPAFLSASSFAVVGASTNREKFGNKVLRCYIQHGKSITPINPKERMIEGIAALANLSSLPNPTNTAVSVVTPP 78          
BLAST of mRNA_H-paniculata_contig20747.5388.1 vs. uniprot
Match: A0A4Q9QA15_9APHY (NAD(P)-binding protein n=3 Tax=Dichomitus squalens TaxID=114155 RepID=A0A4Q9QA15_9APHY)

HSP 1 Score: 80.5 bits (197), Expect = 1.500e-17
Identity = 36/80 (45.00%), Postives = 60/80 (75.00%), Query Frame = 1
Query:    1 LRSMNALVSTFLAADRFAVVGASANPTKFGNKVLRTYLWKEKAVTPINPREEEIEGQKCVKSLSELVQPQDVAVSVVTPP 240
            + S+  +  TFL++ ++AVVGAS + TKFG KVL+ Y  +E+ VTP++P+E+E+EG K V+S+ +L  P + ++S++TPP
Sbjct:    1 MSSLAEVQKTFLSSPKYAVVGASKDQTKFGTKVLKWYQTREQDVTPVHPKEDELEGVKTVRSIGDLPSPSETSISIITPP 80          
BLAST of mRNA_H-paniculata_contig20747.5388.1 vs. uniprot
Match: A0A433PKT1_9FUNG (NAD-binding protein n=1 Tax=Endogone sp. FLAS-F59071 TaxID=2340872 RepID=A0A433PKT1_9FUNG)

HSP 1 Score: 80.5 bits (197), Expect = 1.570e-17
Identity = 40/74 (54.05%), Postives = 54/74 (72.97%), Query Frame = 1
Query:   19 LVSTFLAADRFAVVGASANPTKFGNKVLRTYLWKEKAVTPINPREEEIEGQKCVKSLSELVQPQDVAVSVVTPP 240
            L + F+++  FAVVGAS++P KFGNKVL+ Y+   K+VTPINP++ EI G    KS+SEL  P + A+SV TPP
Sbjct:    7 LQAEFMSSKYFAVVGASSDPNKFGNKVLKWYIEHNKSVTPINPKDAEISGIPAKKSISELEHPTETAISVTTPP 80          
BLAST of mRNA_H-paniculata_contig20747.5388.1 vs. uniprot
Match: A0A0D2WSM2_CAPO3 (CoA_binding domain-containing protein n=1 Tax=Capsaspora owczarzaki (strain ATCC 30864) TaxID=595528 RepID=A0A0D2WSM2_CAPO3)

HSP 1 Score: 80.1 bits (196), Expect = 2.070e-17
Identity = 40/73 (54.79%), Postives = 51/73 (69.86%), Query Frame = 1
Query:   22 VSTFLAADRFAVVGASANPTKFGNKVLRTYLWKEKAVTPINPREEEIEGQKCVKSLSELVQPQDVAVSVVTPP 240
            ++ FLA  +FAVVGASA+P+K GN VL  Y    K V P+NP+  EIEG  CV SLS+L +P   +VSV+TPP
Sbjct:   15 IAQFLATQKFAVVGASADPSKIGNSVLLKYKQANKHVVPVNPKAPEIEGLVCVTSLSQLTEPSRYSVSVITPP 87          
BLAST of mRNA_H-paniculata_contig20747.5388.1 vs. uniprot
Match: A0A3M1MLK2_9DELT (CoA-binding protein (Fragment) n=1 Tax=Deltaproteobacteria bacterium TaxID=2026735 RepID=A0A3M1MLK2_9DELT)

HSP 1 Score: 78.2 bits (191), Expect = 2.430e-17
Identity = 41/74 (55.41%), Postives = 54/74 (72.97%), Query Frame = 1
Query:   22 VSTFLAADRFAVVGASANPTKFGNKVLRTYLWKEKAVTPINPREEEIEGQKCVKSLSELVQPQDV-AVSVVTPP 240
            ++ FLAA  F VVGAS NP K+GNKVLR YL  ++ V P+NP  E IEG  CVKS+++L  P +V ++SV+TPP
Sbjct:    7 IAKFLAAQAFGVVGASTNPAKYGNKVLRCYLQNQRRVVPVNPVAETIEGLPCVKSVADL--PGEVKSISVITPP 78          
BLAST of mRNA_H-paniculata_contig20747.5388.1 vs. uniprot
Match: A0A2Z6RCI7_9GLOM (CoA_binding domain-containing protein n=6 Tax=Rhizophagus TaxID=1129544 RepID=A0A2Z6RCI7_9GLOM)

HSP 1 Score: 79.7 bits (195), Expect = 2.930e-17
Identity = 41/77 (53.25%), Postives = 54/77 (70.13%), Query Frame = 1
Query:   19 LVSTFLAADRFAVVGASANPTKFGNKVLRTYLWKEKAVTPINPREEEIEGQKCVKSLSELVQP---QDVAVSVVTPP 240
            L+  F ++  +AVVGAS NPTK+GNKVL+ Y+   + VTPINP E  IEG +CV +LS L+      DV+VSV+TPP
Sbjct:   10 LIKEFFSSSHYAVVGASNNPTKYGNKVLKWYISNNRPVTPINPNERLIEGLECVPNLSSLISNLNHADVSVSVITPP 86          
The following BLAST results are available for this feature:
BLAST of mRNA_H-paniculata_contig20747.5388.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 vs UniRef90)
Total hits: 25
Match NameE-valueIdentityDescription
A0A6H5L0H6_9PHAE3.760e-3479.22CoA_binding domain-containing protein n=2 Tax=Ecto... [more]
A0A0H2S0Q8_9AGAM6.870e-1952.50NAD(P)-binding protein n=1 Tax=Schizopora paradoxa... [more]
A0A067PLC4_9AGAM1.860e-1848.75CoA_binding domain-containing protein n=1 Tax=Jaap... [more]
A0A836CBV2_9STRA3.450e-1860.81CoA-binding domain-containing protein n=1 Tax=Trib... [more]
W7TQK0_9STRA9.580e-1857.33Binding domain protein n=2 Tax=Nannochloropsis gad... [more]
A0A4Q9QA15_9APHY1.500e-1745.00NAD(P)-binding protein n=3 Tax=Dichomitus squalens... [more]
A0A433PKT1_9FUNG1.570e-1754.05NAD-binding protein n=1 Tax=Endogone sp. FLAS-F590... [more]
A0A0D2WSM2_CAPO32.070e-1754.79CoA_binding domain-containing protein n=1 Tax=Caps... [more]
A0A3M1MLK2_9DELT2.430e-1755.41CoA-binding protein (Fragment) n=1 Tax=Deltaproteo... [more]
A0A2Z6RCI7_9GLOM2.930e-1753.25CoA_binding domain-containing protein n=6 Tax=Rhiz... [more]

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Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
H-paniculata_contig20747contigH-paniculata_contig20747:3095..3712 +
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 vs UniRef902022-09-19
OGS1.0 of Halopteris paniculata Hal_grac_a_UBK monoicous2021-02-24
Properties
Property NameValue
Taxonomic scopeEukaryota
Seed ortholog score124.0
Seed ortholog evalue3e-26
Seed eggNOG ortholog2880.D7FPS1
Hectar predicted targeting categoryother localisation
EggNOG free text desc.CoA binding domain
EggNOG OGs2CYF6@1,2S3ZG@2759
COG Functional cat.S
Best tax levelEukaryota
Best eggNOG OGNA|NA|NA
Exons2
Model size240
Cds size231
Stop0
Start1
Relationships

The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_H-paniculata_contig20747.5388.1prot_H-paniculata_contig20747.5388.1Halopteris paniculata Hal_grac_a_UBK monoicouspolypeptideH-paniculata_contig20747 3104..3712 +


The following UTR feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1622929541.4795754-UTR-H-paniculata_contig20747:3094..31031622929541.4795754-UTR-H-paniculata_contig20747:3094..3103Halopteris paniculata Hal_grac_a_UBK monoicousUTRH-paniculata_contig20747 3095..3103 +
1691480905.51633-UTR-H-paniculata_contig20747:3094..31031691480905.51633-UTR-H-paniculata_contig20747:3094..3103Halopteris paniculata Hal_grac_a_UBK monoicousUTRH-paniculata_contig20747 3095..3103 +


The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1622929541.5240197-CDS-H-paniculata_contig20747:3103..31901622929541.5240197-CDS-H-paniculata_contig20747:3103..3190Halopteris paniculata Hal_grac_a_UBK monoicousCDSH-paniculata_contig20747 3104..3190 +
1691480905.5274005-CDS-H-paniculata_contig20747:3103..31901691480905.5274005-CDS-H-paniculata_contig20747:3103..3190Halopteris paniculata Hal_grac_a_UBK monoicousCDSH-paniculata_contig20747 3104..3190 +
1622929541.5381713-CDS-H-paniculata_contig20747:3568..37121622929541.5381713-CDS-H-paniculata_contig20747:3568..3712Halopteris paniculata Hal_grac_a_UBK monoicousCDSH-paniculata_contig20747 3569..3712 +
1691480905.536697-CDS-H-paniculata_contig20747:3568..37121691480905.536697-CDS-H-paniculata_contig20747:3568..3712Halopteris paniculata Hal_grac_a_UBK monoicousCDSH-paniculata_contig20747 3569..3712 +


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_H-paniculata_contig20747.5388.1

>prot_H-paniculata_contig20747.5388.1 ID=prot_H-paniculata_contig20747.5388.1|Name=mRNA_H-paniculata_contig20747.5388.1|organism=Halopteris paniculata Hal_grac_a_UBK monoicous|type=polypeptide|length=77bp
MNALVSTFLAADRFAVVGASANPTKFGNKVLRTYLWKEKAVTPINPREEE
IEGQKCVKSLSELVQPQDVAVSVVTPP
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mRNA from alignment at H-paniculata_contig20747:3095..3712+

Legend: UTRpolypeptideCDS
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_H-paniculata_contig20747.5388.1 ID=mRNA_H-paniculata_contig20747.5388.1|Name=mRNA_H-paniculata_contig20747.5388.1|organism=Halopteris paniculata Hal_grac_a_UBK monoicous|type=mRNA|length=618bp|location=Sequence derived from alignment at H-paniculata_contig20747:3095..3712+ (Halopteris paniculata Hal_grac_a_UBK monoicous)
CTGCGATCTATGAATGCGCTGGTGAGCACGTTCCTCGCTGCGGATCGGTT CGCTGTGGTGGGCGCATCTGCTAATCCCACCAAGTTTGGCAACAAGGTGA ACAACAGACAGTGAATTTGTTTCATTTGTTCTGAAAATTTACTGCGTCGC AAACAGTGCAACTTATCTACTGTACGATGTACTGTATCGGGTATTCACTG TACTGTGACTTTAGAGAGGTGTATACGCGTACAGTATACACTAACATCCC AGGTACAACCCCATCAGAGCTATTATGATGTCTGCACCTGTGGGTCTCTC CGTCCGTCTGAGAAAATGAAGGATTGAGCGCTACTCGTTCTTTCCTGCTG CACCTCACTCTCTGTGGGTATTCATGCTTCCACCAATGTTTCCCATTCGA TGTTCTCACGTAGCCTAGAGACACAGTCTCGCACGACCGCCGTCTTGTTT CCCCCCACACCCTTCTTCTTTAAGGTGCTCCGAACGTACCTGTGGAAGGA GAAGGCGGTGACACCGATCAACCCTCGAGAAGAAGAGATCGAGGGACAGA AGTGCGTCAAGTCCCTCTCCGAGCTAGTCCAACCGCAGGACGTCGCAGTT TCGGTGGTCACTCCTCCA
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Coding sequence (CDS) from alignment at H-paniculata_contig20747:3095..3712+

>mRNA_H-paniculata_contig20747.5388.1 ID=mRNA_H-paniculata_contig20747.5388.1|Name=mRNA_H-paniculata_contig20747.5388.1|organism=Halopteris paniculata Hal_grac_a_UBK monoicous|type=CDS|length=462bp|location=Sequence derived from alignment at H-paniculata_contig20747:3095..3712+ (Halopteris paniculata Hal_grac_a_UBK monoicous)
ATGAATGCGCTGGTGAGCACGTTCCTCGCTGCGGATCGGTTCGCTGTGGT
GGGCGCATCTGCTAATCCCACCAAGTTTGGCAACAAGATGAATGCGCTGG
TGAGCACGTTCCTCGCTGCGGATCGGTTCGCTGTGGTGGGCGCATCTGCT
AATCCCACCAAGTTTGGCAACAAGGTGCTCCGAACGTACCTGTGGAAGGA
GAAGGCGGTGACACCGATCAACCCTCGAGAAGAAGAGATCGAGGGACAGA
AGTGCGTCAAGTCCCTCTCCGAGCTAGTCCAACCGCAGGACGTCGCAGTT
TCGGTGGTCACTCCTCCAGTGCTCCGAACGTACCTGTGGAAGGAGAAGGC
GGTGACACCGATCAACCCTCGAGAAGAAGAGATCGAGGGACAGAAGTGCG
TCAAGTCCCTCTCCGAGCTAGTCCAACCGCAGGACGTCGCAGTTTCGGTG
GTCACTCCTCCA
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