mRNA_H-paniculata_contig20714.5379.1 (mRNA) Halopteris paniculata Hal_grac_a_UBK monoicous
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Overview
Homology
BLAST of mRNA_H-paniculata_contig20714.5379.1 vs. uniprot
Match: A0A6H5KJN3_9PHAE (Gag-Pol-p199 n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5KJN3_9PHAE) HSP 1 Score: 446 bits (1147), Expect = 1.900e-133 Identity = 260/558 (46.59%), Postives = 333/558 (59.68%), Query Frame = 3
Query: 1701 STVSVMVDSGASGHYFDDTLIPGLRYKLFNYQELTVPRKITTAGGHQLAGVGQGLLRGHINDSEGVKRLVQISCLVVPGLGRNLFSVKQATRNGVVSIFDMNNPRLETNNFTVPLQELESD---LYFFSLEI----------TSGSGAPGLAMQAADTATLWHRRMGHLNRNSLNLLKTVDDNGVDFGGAVPDCDICAVGKSHQLAHPKTADNQVQRAFQLVMTDLMGPIMPEALGGFKYACKISDEYTRWTEIYLLKTKDGALHAFQSFIQSMVIPGGVRVERLRADKGGEFIGNDFRSYCRQTGVLLEFASTNTPQQIGMSERVGRTLAAMVRCMLADSGLPTFLWGELMFTAAYLANRAPHSALGMQSPHKMLKGTEPDLRHLRVIGARAFVHIERHTPKLALKAVEGRLVGYSNHSKSYRVYNPATRRIIESRNVVFIET---PPHLTPTGEPQLLIHPSSPSDSEGHNYATDDDFLRDLRDHTSVLAQPARVSVDHATASGVSSNPQVAELLERISTITRRDMLHDDATPREGT-------SPASPEGGEPPE 3305
S++ ++VDSGA+ +Y D L PG+R + + ++L +P I TAG H L GV G+L G + D G R V ++VPGLG NLFSV A NGV S+F +NPRLE+ + VP++ D S+ I T G GLA++ +TA LWHRRMGH+N SL++L+ +G+D+ G V DC C +GKS Q HPK A V FQLV D +GP P ALGGFKYA K D++T+W E+ L+K K ++ A + F + VIP R+ LRADKG EF +R YC G+ L+FAS NTP QIG +ER GRT+ +VRCMLADS LP+ LWGELM TA YL+NR PH+AL +P+K L GT+ L HLRV+GARAFVH E HT KL +A EGRLVGYS SKSYR+YN TRR+ ESRNV+FIET PP L G D YA DD +RD+R++T+ SVD + + +P V ELLE IST+ RD+ + A P S ASP G PPE
Sbjct: 416 SSILMLVDSGATDNYLDPALTPGVRAHMRDIEDLRIPLPIITAGQHVLHGVTTGVLFGTVTDDSGQDRQVSFRVVLVPGLGTNLFSVTAALSNGVASLFYPDNPRLESADAVVPMKIQGVDNTGKITCSITIKLGAENGGRQTPGETPDGLALRV-ETADLWHRRMGHINNKSLDVLRQQAASGIDYRGDVQDCSACPLGKSSQQPHPKHAVYGVSTPFQLVFVDTLGPFTPTALGGFKYATKFVDQHTKWKEVVLMKDKTCSIDALELFNKGTVIPRSARIHVLRADKGTEFTNAAYRQYCLDVGIQLQFASPNTPHQIGANERAGRTIMNIVRCMLADSTLPSLLWGELMQTAVYLSNRTPHAALHNGTPYKALFGTDAHLGHLRVVGARAFVHEETHTKKLDSRAWEGRLVGYSLDSKSYRIYNAQTRRVRESRNVIFIETTPAPPSLDERG-----------FDDGEFTYADHDDMIRDVRNYTT------NHSVDALSPTHAVGDPSVLELLEDISTVHNRDLGTNSADPAPAAEDAPADDSLASPGGVSPPE 955
BLAST of mRNA_H-paniculata_contig20714.5379.1 vs. uniprot
Match: A0A6H5JYB5_9PHAE (Uncharacterized protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5JYB5_9PHAE) HSP 1 Score: 431 bits (1109), Expect = 7.710e-128 Identity = 255/559 (45.62%), Postives = 327/559 (58.50%), Query Frame = 3
Query: 1701 STVSVMVDSGASGHYFDDTLIPGLRYKLFNYQELTVPRKITTAGGHQLAGVGQGLLRGHINDSEGVKRLVQISCLVVPGLGRNLFSVKQATRNGVVSIFDMNNPRLETNNFTVPLQELESD---LYFFSLEI----------TSGSGAPGLAMQAADTATLWHRRMGHLNRNSLNLLKTVDDNGVDFGGAVPDCDICAVGKSHQLAHPKTADNQVQRAFQLVMTDLMGPIMPEALGGFKYACKISDEYTRWTEIYLLKTKDG-ALHAFQSFIQSMVIPGGVRVERLRADKGGEFIGNDFRSYCRQTGVLLEFASTNTPQQIGMSERVGRTLAAMVRCMLADSGLPTFLWGELMFTAAYLANRAPHSALGMQSPHKMLKGTEPDLRHLRVIGARAFVHIERHTPKLALKAVEGRLVGYSNHSKSYRVYNPATRRIIESRNVVFIET---PPHLTPTGEPQLLIHPSSPSDSEGHNYATDDDFLRDLRDHTSVLAQPARVSVDHATASGVSSNPQVAELLERISTITRRDMLHDDATPREGT-------SPASPEGGEPPE 3305
S++ ++ DSGA+ +Y D L PG+R + + ++L +P I TAG H L GV G+L G + D G R V ++VPGLG NLFSV A NGV S+F +NPRLE+ + VP++ D S+ I T G GLA++ +TA LWHRRMGH+N SL++L+ +G+D+ G V DC C +GKS Q HPK A V FQLV D GP LGGFKYA K D++T+W E+ L+K K ++ + F + VIP R+ LRA KG EF +R YC G+ L+FAS NTP QIG +ER GRT+ +VRCMLADS LP+ LWGELM TA YL+NR PH+AL +P+K L GT+ L HLRV+GARAFVH E HT KL +A EGRLVGYS SKSYR+YN TRR+ ESRNV+FIET PP L G D YA DD +RD+R++T+ SVD + + +P V ELLE IST+ RD+ + A P S ASP G PPE
Sbjct: 321 SSILMLEDSGATDNYLDPALTPGVRAHMRDIEDLRIPLPIITAGQHVLHGVTTGVLFGTVTDDSGQDRQVSFRVVLVPGLGTNLFSVTAALSNGVASLFYPDNPRLESADAVVPMKIQGVDNTGKITCSITIKLGAENGGRQTPGETPDGLALRV-ETADLWHRRMGHINNKSLDVLRQQAASGIDYRGDVQDCSACPLGKSSQQPHPKHAVYGVSTPFQLVFVDTFGPFTSTTLGGFKYATKFVDQHTKWKEVVLMKDKTSCSIDGLELFNKGTVIPRSARIHVLRAGKGAEFTNAAYRQYCLDVGIQLQFASPNTPHQIGANERAGRTIMNIVRCMLADSTLPSLLWGELMQTAVYLSNRTPHAALHNGTPYKALFGTDAHLGHLRVVGARAFVHEETHTKKLDSRAWEGRLVGYSLDSKSYRIYNAQTRRVRESRNVIFIETNPAPPSLDERG-----------FDDGEFTYADHDDMIRDVRNYTT------NHSVDALSPTHAVGDPSVLELLEDISTVHNRDLGTNSADPAPAAEDAPADDSLASPGGVSPPE 861
BLAST of mRNA_H-paniculata_contig20714.5379.1 vs. uniprot
Match: A0A6H5J842_9PHAE (Gag-Pol-p199 n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5J842_9PHAE) HSP 1 Score: 433 bits (1113), Expect = 9.410e-125 Identity = 246/518 (47.49%), Postives = 315/518 (60.81%), Query Frame = 3
Query: 1701 STVSVMVDSGASGHYFDDTLIPGLRYKLFNYQELTVPRKITTAGGHQLAGVGQGLLRGHINDSEGVKRLVQISCLVVPGLGRNLFSVKQATRNGVVSIFDMNNPRLETNNFTVPLQELESD---LYFFSLEI----------TSGSGAPGLAMQAADTATLWHRRMGHLNRNSLNLLKTVDDNGVDFGGAVPDCDICAVGKSHQLAHPKTADNQVQRAFQLVMTDLMGPIMPEALGGFKYACKISDEYTRWTEIYLLKTKDGALHAFQSFIQSMVIPGGVRVERLRADKGGEFIGNDFRSYCRQTGVLLEFASTNTPQQIGMSERVGRTLAAMVRCMLADSGLPTFLWGELMFTAAYLANRAPHSALGMQSPHKMLKGTEPDLRHLRVIGARAFVHIERHTPKLALKAVEGRLVGYSNHSKSYRVYNPATRRIIESRNVVFIETPPHLTPTGEPQLLIHPSSPSDSEGHNYATDDDFLRDLRDHTSVLAQPARVSVDHATASGVSSNPQVAELLERIS 3215
S++ ++VDSGA+ +Y D L PG+R + + ++L +P I TAG H L GV G+L G + D G R V ++VPGLG NLFSV A NGV S+F +NPRLE+ + VP++ D S+ I T G GLA++ +TA LWHRRMGH+N SL++L+ +G+D+ G V DC C +GKS Q HPK A V FQLV D +GP P ALGGFKYA K D++T+W E+ L+K K ++ A + F + VIP R+ LRADKG EF +R YC G+ L+FAS NTP QIG +ER GRT+ +VRCMLADS LP+ LWGELM TA YL+NR PH+AL +P+K L GT+ L HLRV+GARAFVH E HT KL +A EGRLVGYS SKSYR+YN TRR+ ESRNV+FIE PT P L D YA DD +RD+R++T+ SVD + +P V ELLE IS
Sbjct: 416 SSILMLVDSGATDNYLDPALTPGVRAHMRDIEDLRIPLPIITAGQHVLHGVTTGVLFGTVTDDSGQDRRVSFRVMLVPGLGNNLFSVTAALSNGVASLFYPDNPRLESADAVVPMKIQGVDNTGKITCSITIKLGAENGGRQTPGETPDGLALRV-ETADLWHRRMGHINNKSLDVLRQQAASGIDYRGDVQDCSACPLGKSSQQPHPKHAVYGVSTPFQLVFVDTLGPFTPTALGGFKYATKFVDQHTKWKEVVLMKDKTCSIDALELFNKGTVIPRSARIHVLRADKGTEFTNAAYRQYCLDVGIQLQFASPNTPHQIGANERAGRTIMNIVRCMLADSTLPSLLWGELMQTAVYLSNRTPHAALHNGTPNKALFGTDAHLGHLRVVGARAFVHEETHTKKLDSRAWEGRLVGYSLDSKSYRIYNAQTRRVRESRNVMFIE------PTPAPPSLDERGF--DDGEFTYADHDDMIRDMRNYTT------NHSVDALPPTHAVGDPSVLELLEDIS 918
BLAST of mRNA_H-paniculata_contig20714.5379.1 vs. uniprot
Match: A0A6H5JKW9_9PHAE (Integrase catalytic domain-containing protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5JKW9_9PHAE) HSP 1 Score: 358 bits (920), Expect = 5.330e-102 Identity = 258/684 (37.72%), Postives = 343/684 (50.15%), Query Frame = 3
Query: 1077 GGDGKPQWCSLHMTNNHSDEECRVLQRHNNNNQ------GANFAQWSSYSTVTGTGEQPPAISFNALKTPSTNNPSDNSSKAEDLWPFAPTSEPVA--AFDS---SGLFGAFGGVNG--------GETGGLSLTVNDGPEE---------GLELRRRANNMLQVIREAMSPLARVLAIMAV----------------VHYVWLMFGSSLYQRATSNNNLNSKPETFRGITDVDDGSALAAGPAFEKWNDDNNSTVSVMVDSGASGHYFDDTLIPGLRYKLFNYQELTVPRKITTAGGHQLAGVGQGLLRGHINDSEGVKRLVQISCLVVPGLGRNLFSVKQATRNGVVSIFDMNNPRLETNNFTVPLQELESDLYFFSLEITSGSGAPGLAMQAADTATLWHRRMGHLNRNSLNLLKTVDDNGVDFGGAVPDCDICAVGKSHQLAHPKTADNQVQRAFQLVMTDLMGPIMPEALGGFKYACKISDEYTRWTEIYLLKTKDGALHAFQSFIQSMVIPGGVRVERLRADKGGEFIGNDFRSYCRQTGVLLEFASTNTPQQIGMSERVGRTLAAMVRCMLADSGLPTFLWGELMFTAAYLANRAPHSALGMQSPHKMLKGTEPDLRHLRVIGARAFVHIERHTPKLALKAVEGRLVGYSNHSKSYRVYNPATRRIIESRNVVFIETP 2996
GG +P+WCS H T HSD EC+ + N Q AN A S S N L+ N A A +S VA A S SG FGAF + + + + V+ G + GL R L+V ++ RVL +A V + ++ +S +TSN + P F G A A + + D S++ ++VD GA +Y D L PGLR + + + L VP I AG L GV G + G + D G R V ++VPGLG LFSV A GV ++ +N RLE+ + P+Q L ++ T+G + +++AD LWHRRMGH+N SL++L+ NGVD+ G V DC +C +GKS Q HPK A V R FQ V D +GP P AL GFK A K D+ + +G+L F + V+P G R+ LR D+G EF +FR YC+ G+ LEFA+ NTPQQIG ++R RT+ +V C+LADS LP FLWGEL+ TA YL++R PH+AL +P+K L G + L HLRVIG+RAFVH E HT KL +A EGRL GYS SKSYR+YN TRR+ SRNVVFIETP
Sbjct: 284 GGSVQPKWCSYHNTKTHSDAECQKQKEIRENKQKELEGLAANLALLQSASHA------------NFLRL-------SNKGSAH----LAQSSPAVAQQARQSRLRSGFFGAFMATHAELSLAPFRSDGSSIRMVVDRGARDNYLDPGLTPGLRAHMRDVKYLRVPHTIVAAGQRVLKGVATGTIFGAVTDDNGNDRHVSFC-VVLAASASASSTSNAQAHRLPSGFFGAF-----MATHAELSLAPFRSD-GSSIRMVVDRGARDNYLDPGLTPGLRAHMRDVKYLRVPHTIVAAGQRVLKGVATGTIFGAVTDDNGNDRHVSFCVVLVPGLGTKLFSVTLAMLKGVATLCHPDNHRLESGDVVFPMQTL-------GVDATTGKRIYSIEVESAD---LWHRRMGHINGKSLDVLRKEPVNGVDYTGDVKDCSVCPLGKSAQQPHPKQATYGVLRPFQHVSVDTLGPFTPTALSGFKVATKFVDQKDK-------ACSEGSLALFN---KGTVVPTGERIHCLRGDQGTEFTSAEFRQYCQDIGIELEFAAPNTPQQIGPNDRARRTILNVVHCLLADSTLPNFLWGELIQTAVYLSSRVPHAALQNGTPYKALYGKDAYLGHLRVIGSRAFVHEETHTRKLEHRAREGRL-GYSMDSKSYRIYNSETRRVRVSRNVVFIETP 916
BLAST of mRNA_H-paniculata_contig20714.5379.1 vs. uniprot
Match: A0A6H5KL37_9PHAE (Integrase catalytic domain-containing protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5KL37_9PHAE) HSP 1 Score: 343 bits (880), Expect = 1.410e-98 Identity = 194/419 (46.30%), Postives = 252/419 (60.14%), Query Frame = 3
Query: 1980 GVVSIFDMNNPRLETNNFTVPLQELESDLYFFSLEITSGSGAPGLAMQAADTATLWHRRMGHLNRNSLNLLKTVDDNGVDFGGAVPDCDICAVGKSHQLAHPKTADNQVQRAFQLVMTDLMGPIMPEALGGFKYACKISDEYTRWTEIYLLKTKDGALHAFQSFIQSMVIPGGVRVERLRADKGGEFIGNDFRSYCRQTGVLLEFASTNTPQQIGMSERVGRTLAAMVRCMLADSGLPTFLWGELMFTAAYLANRAPHSALGMQSPHKMLKGTEPDLRHLRVIGARAFVHIERHTPKLALKAVEGRLVGYSNHSKSYRVYNPATRRIIESRNVVFIETPPHLTPTGEPQLLIHPSSPSDSEGHNYATDDDFLRDLRDHTSVLAQPARVSVDHATASGVSSNPQVAELLERISTITRRDM 3236
GV ++F +NPRLE+ + P+Q L ++ T+G + +++AD LWHRRMGH+N +L++L+ NGVD+ G V C +C +GKS Q HPK A V R FQ D +GP P ALGG KYA K D+ T+W EI L+K + ++ + F + V+P G R+ LR D+G EF +FR YC+ G+ LEFAS N PQQIG +ER GRT+ +VRC+LADS LP FLWGEL+ TA YL+NR PH+AL +P+K L G + L HLRVIG+RAFVH E HT KL +A EGRLVGYS SKSYR+YN TRR+ SRNVVFIETPP E D Y T DD +RD+R++T S+D + V ELLE+I T RD+
Sbjct: 4 GVATLFHPDNPRLESGDVFFPMQTL-------GVDATTGKRIYSIKVESAD---LWHRRMGHINGKNLDVLRKEQVNGVDYTGDVKYCSVCPLGKSAQQPHPKQATYGVLRPFQ---HDTLGPFAPTALGGSKYATKFVDQQTKWAEIVLMKDETCSVDSLALFNKGTVVPTGERIHCLRGDQGTEFTSAEFRQYCQDIGIKLEFASPNIPQQIGANERAGRTILNVVRCLLADSTLPNFLWGELIQTAVYLSNRVPHAALQNGTPYKALYGKDAYLGHLRVIGSRAFVHEETHTRKLEHRAWEGRLVGYSMDSKSYRIYNSETRRVRVSRNVVFIETPPVAPALDEFGF--------DDREFTYDTHDDMVRDVRNYT------FNHSIDSLPPDHDVGDIPVIELLEQIHETTNRDL 395
BLAST of mRNA_H-paniculata_contig20714.5379.1 vs. uniprot
Match: A0A6H5JC75_9PHAE (Uncharacterized protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5JC75_9PHAE) HSP 1 Score: 346 bits (888), Expect = 2.420e-97 Identity = 195/432 (45.14%), Postives = 252/432 (58.33%), Query Frame = 3
Query: 1764 PGLRYKLFNYQELTVPRKITTAGGHQLAGVGQGLLRGHINDSEGVKRLVQISCLVVPGLGRNLFSVKQATRNGVVSIFDMNNPRLETNNFTVPLQELESD------LYFFSLEITSGSGAPGLAMQAAD-------TATLWHRRMGHLNRNSLNLLKTVDDNGVDFGGAVPDCDICAVGKSHQLAHPKTADNQVQRAFQLVMTDLMGPIMPEALGGFKYACKISDEYTRWTEIYLLKTKDGALHAFQSFIQSMVIPGGVRVERLRADKGGEFIGNDFRSYCRQTGVLL-------EFASTNTPQQIGMSERVGRTLAAMVRCMLADSGLPTFLWGELMFTAAYLANRAPHSALGMQSPHKMLKGTEPDLRHLRVIGARAFVHIERHTPKLALKAVEGRLVGYSNHSKSYRVYNPATRRIIESRNVVFIETPP 2999
PGLR + + + L VP I AG H L GV G G + D G R V ++VPGL NLFSV A G ++ ++PRLE+ + +P+Q L D +Y +++ +G P + A D +A LWHRRMGH+N L++L+ NGVD+ G V DC + + V R FQ V D +GP P ALGGFKYA K ++ T+W EI L+K K ++ + F + V+P G R+ LR D+G EF +FR YC+ + L EFAS NTPQQIG + R GRT+ +VRC+LADS LP FLWGEL+ TA YL+NR PH+AL +P+K L G + L HLRVIG+RAFVH HT KL +A EGRLVGYS SKSYR+YN TRR+ SRNVVFIETPP
Sbjct: 452 PGLRAHMRDVEHLRVPHTIVAAGQHVLKGVATGTFFGAVTDDNGTDRHVSFCVILVPGLSTNLFSVTLAMLKGEATLVHPDDPRLESGDVVIPMQTLGVDTTTGKRIYSIEVKLGGEAGGPMVLEDAPDALALKVESADLWHRRMGHINGKRLDVLRKEPVNGVDYTGDVKDCHLRR--PAPLXXXXXXXXXXVLRPFQHVSVDTVGPFKPTALGGFKYATKFVEQQTKWEEIVLMKDKPCSVDSLALFNKGTVVPAGERIPCLRGDQGTEFTSAEFRQYCQNISIKLXNISIKLEFASPNTPQQIGANARAGRTILNVVRCLLADSTLPNFLWGELIQTAVYLSNRVPHAALQNGTPYKALYGKDAYLGHLRVIGSRAFVHEATHTRKLEHRAWEGRLVGYSTVSKSYRIYNSETRRVRVSRNVVFIETPP 881
BLAST of mRNA_H-paniculata_contig20714.5379.1 vs. uniprot
Match: A0A6H5KY84_9PHAE (Integrase catalytic domain-containing protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5KY84_9PHAE) HSP 1 Score: 342 bits (877), Expect = 4.640e-95 Identity = 184/444 (41.44%), Postives = 257/444 (57.88%), Query Frame = 3
Query: 1725 SGASGHYFDDTLIPGLRYKLFNYQELTVPRKITTAGGHQLAGVGQGLLRGHINDSEGVKRLVQISCLVVPGLGRNLFSVKQATRNGVVSIFDMNNPRLET-------NNFTVPLQELESDLYFFSLEITSGSGAPG---------------LAMQAADTATLWHRRMGHLNRNSLNLLKTVDDNGVDFGGAVPDCDICAVGKSHQLAHPKTADNQVQRAFQLVMTDLMGPIMPEALGGFKYACKISDEYTRWTEIYLLKTKDGALHAFQSFIQSMVIPGGVRVERLRADKGGEFIGNDFRSYCRQTGVLLEFASTNTPQQIGMSERVGRTLAAMVRCMLADSGLPTFLWGELMFTAAYLANRAPHSALGMQSPHKMLKGTEPDLRHLRVIGARAFVHIERHTPKLALKAVEGRLVGYSNHSKSYRVYNPATRRIIESRNVVFIE 2990
SGASGHY D L+P L L ++ +T P KI AGG +L G +G++ D EG R V+ C VVPGLGR+LFS A + G +I + PR+E + + L+E+ + LYF + + + +A A+ LWHRR+ H ++ + + + GV + C+ C + KS Q HPKTA + + Q V TDL+GPI P A GGF Y K +DEY+R +YL++TKD A+ + FI +VIP G R+ERLR+D GGE+ + +C+ G++ EF + TPQQ G+SER GRTL +VRC+L LP +LWGEL TA ++ NR PH L ++P+ + G + LRHLRVIG+ AFVH+E + KLA +A G LVGYS +S +YR+YNP T+RI+ SRNV FIE
Sbjct: 311 SGASGHYLDSELLPDLENILDDFTYITTPTKIIGAGGIELEGTSKGIISVFAKDEEGNDRRVRFKCTVVPGLGRHLFSTGTAQKKGANTIMS-DQPRIELPATSRDGSTIALVLREVGT-LYFLDVRLDTNQCERRRRITEENMNTYENSYVAAPRAEPYNLWHRRLAHCHKGIIEAAARIKETGVKLTDNLDPCETCKLQKSTQRKHPKTAKHTAVQPCQRVYTDLLGPISPPAKGGFNYVSKFTDEYSRMNVVYLIRTKDEAIDTLERFIDDIVIPNGFRLERLRSDCGGEYTAEYYTKFCKTIGIVQEFTAPATPQQNGISERAGRTLMNIVRCLLHGGQLPEYLWGELCCTAVHITNRLPHVHLNNETPYYRMFGKQASLRHLRVIGSSAFVHVETYKSKLANRAWPGILVGYSPNSNAYRIYNPHTKRIVPSRNVTFIE 752
BLAST of mRNA_H-paniculata_contig20714.5379.1 vs. uniprot
Match: A0A6H5KVF6_9PHAE (Integrase catalytic domain-containing protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5KVF6_9PHAE) HSP 1 Score: 325 bits (833), Expect = 4.100e-94 Identity = 174/423 (41.13%), Postives = 244/423 (57.68%), Query Frame = 3
Query: 1707 VSVMVDSGASGHYFDDTLIPGLRYKLFNYQELTVPRKITTAGGHQLAGVGQGLLRGHINDSEGVKRLVQISCLVVPGLGRNLFSVKQATRNGVVSIFDMNNPRLETNNFTVPLQELESDLYFFSLEIT-----SGSGAPGLAMQAADTAT--------------LWHRRMGHLNRNSLNLLKTVDDNGVDFGGAVPDCDICAVGKSHQLAHPKTADNQVQRAFQLVMTDLMGPIMPEAL---GGFKYACKISDEYTRWTEIYLLKTKDGALHAFQSFIQSMVIPGGVRVERLRADKGGEFIGNDFRSYCRQTGVLLEFASTNTPQQIGMSERVGRTLAAMVRCMLADSGLPTFLWGELMFTAAYLANRAPHSALGMQSPHKMLKGTEPDLRHLRVIGARAFVHIERHTPKLALKAVEGRLVGY 2909
V ++VD+GAS FD+ LIP L +Y + P+ + AG QL G G+L + D+ G + V+I L+VPGLGRN+FS + G+ + + + P L +PL + D +L+IT SG L + T WHRR+GHLN SL++L+ VD+ ++ C +C + K Q HPK + ++ R QLV+ D MGP+ P A G F YACK++D+YT+ E+YLL+ K A ++ + GG R+E +R DKGGE G++FR YC+ + + LE+A+TNTPQQIG+SER G+TLA + RC+L D P +WGELM TAAYL NR+PHSALG +P+ L+ PDL LRVIGARAFVH ER+ KL +A EG+L G+
Sbjct: 206 VGLLVDTGASEPMFDNRLIPD--GNLHDYTQRNSPKIVDVAGERQLKGTATGILHCTVKDNRGQQLRVRIQGLIVPGLGRNIFSPTSLLKRGLRCVGEKSTPHLTIQGKVIPLTQDPRDQGMCTLDITFEQNVQPSGTKSLVPHQKQSQTHTANAVCFTLVSADTWHRRLGHLNARSLDILRKDTGTEVDYRDSLSPCGVCQIAKHKQSPHPKQSTRELSRPGQLVVIDNMGPVNPPAKYKGGSFPYACKVTDDYTKMKEVYLLRKKSDTTEAVHTYNMCVAAAGGYRIETIRCDKGGENTGSEFRDYCKNSAIKLEYAATNTPQQIGVSERDGQTLAGVTRCLLKDGDFPPSMWGELMLTAAYLLNRSPHSALGGATPYSKLRNKSPDLSGLRVIGARAFVHHERYRKKLDDRAFEGKLCGF 626
BLAST of mRNA_H-paniculata_contig20714.5379.1 vs. uniprot
Match: A0A6H5KAG6_9PHAE (Integrase catalytic domain-containing protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5KAG6_9PHAE) HSP 1 Score: 327 bits (839), Expect = 4.590e-91 Identity = 187/492 (38.01%), Postives = 268/492 (54.47%), Query Frame = 3
Query: 1704 TVSVMVDSGASGHYFDDTLIPGLRYKLFNYQELTVPRKITTAGGHQLAGVGQGLLRGHINDSEGVKRLVQISCLVVPGLGRNLFSVKQATRNGVVSIFDMNNPRLETNNFTVPLQELES--DLYFFSLEITSGSGAP----------GLAMQAADT----------------------------------------ATLWHRRMGHLNRNSLNLLKTVDDNGVDFGGAVPDCDICAVGKSHQLAHPKTAD-NQVQRAFQLVMTDLMGPIMPEALGGFKYACKISDEYTRWTEIYLLKTKDGALHAFQSFIQSMVIPGGVRVERLRADKGGEFIGNDFRSYCRQTGVLLEFASTNTPQQIGMSERVGRTLAAMVRCMLADSGLPTFLWGELMFTAAYLANRAPHSALGMQSPHKMLKGTEPDLRHLRVIGARAFVHIERHTPKLALKAVEGRLVGYSNHSKSYRVYNPATRRIIESRNVVFIETPPHLTPTGE 3020
T ++ VD+GAS H+ D+ LIP L ++ Y ++ P I AG QL G +G L+ + D G R +++ + VP LGR+LFS A + GV S F + L+T F +PL+ ++ L+ F L I S A L ++A+T A WH+R+GH N L L +D +GV + C C + KS Q HPK A+ + + QLV TDL+GPI P A+GG+ Y K +D TR +Y + K AL + +++Q + IP G+RV+ L +D GGE++ +DFR YCR TG++ F+S +TPQQ G+SER GRT+ M RC++ ++ LP LWGE+ T+ +L NR PH AL +P+ + G + +L LR+IG+RAFVHIE HT KL KA EG LVGY++ S ++R+YN T RI +RNV FIE PP + P E
Sbjct: 42 TFTMTVDTGASNHFLDNELIPALEQRMVEYTKIDPPLLIHVAGQGQLHGTAKGALKVTVTDQNGNPRSIRLPFICVPKLGRHLFSGGTARKQGV-STFIGSTSFLDTGVFKIPLRPDDACDTLFHFDLAIAPDSVATHHAFSTISGLDLPTESANTVYTSASASSASSTTTGAVAGARPAXXXXXXXXXXXXXTASANTWHQRLGHPNVQVLEQLARIDGSGVHLRDSFSACGTCKINKSSQQNHPKIANMDGITERLQLVSTDLLGPISPSAIGGYNYMAKFTDHATRLKAVYFIAKKGDALSSLVNYVQDVAIPLGLRVQYLHSDNGGEYVNSDFRDYCRTTGIIQRFSSPHTPQQNGISERDGRTIMNMARCIINETNLPKHLWGEIAATSVFLINRLPHKALKGDTPYFRMFGKQANLSFLRIIGSRAFVHIEGHTTKLQAKAWEGVLVGYNDDSPTFRIYNRTTGRITSTRNVTFIEKPPAVLPIVE 532
BLAST of mRNA_H-paniculata_contig20714.5379.1 vs. uniprot
Match: A0A6H5KJH6_9PHAE (Uncharacterized protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5KJH6_9PHAE) HSP 1 Score: 330 bits (846), Expect = 8.010e-90 Identity = 216/540 (40.00%), Postives = 277/540 (51.30%), Query Frame = 3
Query: 1869 RGHINDSEGVKRLVQISCLVVPGLGRNLFSVKQATRNGVVSIFDMNNPRLETNNFTVPLQELESD---LYFFSLEI----------TSGSGAPGLAMQAADTATLWHRRMGHLNRNSLNLLKTVDDNGVDFGGAVPDCDICAVGKSHQLAHPKTADNQVQRAFQLVMTDLMGPIMPEALGGFKYACKISDEYTRWTEIYLLKTKDGALHAFQSFIQSMVIPGGVRVERLRADKGGEFIGNDFRSYCRQTGVLLEFASTNTPQQIGMSERVGRTLAAMVRCMLADSGLPTFLWGELMFTAAYLANRAPHSALGMQSPHKMLKGTEPDLRHLRVIGARAFVHIERHTPKLALKAVEGRLVGYSNHSKSYRVYNPATRRII--------------------------------------ESRNVVFIET---PPHLTPTGEPQLLIHPSSPSDSEGHNYATDDDFLRDLRDHTSVLAQPARVSVDHATASGVSSNPQVAELLERISTITRRDMLHDDATPREGT-------SPASPEGGEPPE 3305
RGH+ D +C +VPGLG NLFSV A NGV S+F +NPRLE+ + VP++ D S+ I T G GL ++ +TA LWHRRMGH+N SL++L+ +G+D+ G V DC C +GKS Q HPK A V FQLV D +GP P ALGGFKYA K D++T+W E+ L+K K ++ A + F + VIP R+ LRADKG EF +R YC G+ L+FAS NTP QIG +ER GRT+ +VRCMLADS LP+ LWGELM TA YL+NR PH+AL T+ L HLRV+GARAFVH E HT KL + R V SN + ++N + + ESRN +FIET PP L G D YA DD +RD+R++T+ SVD + + +P V ELLE IST+ RD+ + A P S ASP G PPE
Sbjct: 602 RGHVQDCS--------ACPLVPGLGTNLFSVTAALSNGVASLFYPDNPRLESADAVVPMKIQGVDNTGKITCSITIKLGAENGGRQTPGETPDGLPLRV-ETADLWHRRMGHINNKSLDVLRQQAASGIDYRGDVQDCSACPLGKSSQQPHPKHAVYGVSTPFQLVFVDTLGPFTPTALGGFKYATKFVDQHTKWKEVVLMKDKTCSIDALELFNKGTVIPRSARIHVLRADKGTEFTNAAYRQYCLDVGIQLQFASPNTPHQIGANERAGRTIMNIVRCMLADSTLPSLLWGELMQTAVYLSNRTPHAALHNXXXXXXXFSTDAHLGHLRVVGARAFVHEETHTKKL-----DSRXVYLSNRTPHAALHNGTPYKALFGTDAHLGHLRVVGARAFVHEETHTKKLDSRAWEGRRGESRNGIFIETNPAPPSLDERG-----------FDDGEFTYADHDDMIRDVRNYTT------NHSVDALSPTHAVGDPSVLELLEDISTVHNRDLGTNSADPAPAAEDAPADDSLASPGGVSPPE 1110 The following BLAST results are available for this feature:
BLAST of mRNA_H-paniculata_contig20714.5379.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 vs UniRef90) Total hits: 25
Pagesback to topAlignments
The following features are aligned
Analyses
This mRNA is derived from or has results from the following analyses
Properties
Relationships
The following polypeptide feature(s) derives from this mRNA:
The following CDS feature(s) are a part of this mRNA:
The following UTR feature(s) are a part of this mRNA:
Sequences
The following sequences are available for this feature:
protein sequence of mRNA_H-paniculata_contig20714.5379.1 >prot_H-paniculata_contig20714.5379.1 ID=prot_H-paniculata_contig20714.5379.1|Name=mRNA_H-paniculata_contig20714.5379.1|organism=Halopteris paniculata Hal_grac_a_UBK monoicous|type=polypeptide|length=838bp MTNNHSDEECRVLQRHNNNNQGANFAQWSSYSTVTGTGEQPPAISFNALKback to top mRNA from alignment at H-paniculata_contig20714:242..4526- Legend: UTRpolypeptideCDS Hold the cursor over a type above to highlight its positions in the sequence below.>mRNA_H-paniculata_contig20714.5379.1 ID=mRNA_H-paniculata_contig20714.5379.1|Name=mRNA_H-paniculata_contig20714.5379.1|organism=Halopteris paniculata Hal_grac_a_UBK monoicous|type=mRNA|length=4285bp|location=Sequence derived from alignment at H-paniculata_contig20714:242..4526- (Halopteris paniculata Hal_grac_a_UBK monoicous)back to top Coding sequence (CDS) from alignment at H-paniculata_contig20714:242..4526- >mRNA_H-paniculata_contig20714.5379.1 ID=mRNA_H-paniculata_contig20714.5379.1|Name=mRNA_H-paniculata_contig20714.5379.1|organism=Halopteris paniculata Hal_grac_a_UBK monoicous|type=CDS|length=5028bp|location=Sequence derived from alignment at H-paniculata_contig20714:242..4526- (Halopteris paniculata Hal_grac_a_UBK monoicous)back to top |