mRNA_H-paniculata_contig20688.5374.1 (mRNA) Halopteris paniculata Hal_grac_a_UBK monoicous

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_H-paniculata_contig20688.5374.1
Unique NamemRNA_H-paniculata_contig20688.5374.1
TypemRNA
OrganismHalopteris paniculata Hal_grac_a_UBK monoicous (Halopteris paniculata Hal_grac_a_UBK monoicous)
Homology
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BLAST of mRNA_H-paniculata_contig20688.5374.1 vs. uniprot
Match: A0A6H5LJ25_9PHAE (Uncharacterized protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5LJ25_9PHAE)

HSP 1 Score: 56.2 bits (134), Expect = 4.180e-7
Identity = 33/94 (35.11%), Postives = 45/94 (47.87%), Query Frame = 1 
Query:    1 GSVIWKWQNGTTEDDKFEAXXXXXXXXXXXXXXXXXXXXXXXXXXXXNGTMDFAAVKLGADGTLTWKWQGGDSDGDDELLSASAGADGTVVLAG 282
            G+ +W+WQ+GT EDD  EA                            +   DFAAV L +DG   W+WQ G ++ DD L  A+   DG+VVL+G
Sbjct:  239 GTEVWRWQDGTAEDDFVEAVVHSDDGSAVLAGHTYGSWSSDNADGSFS--KDFAAVMLSSDGKEIWRWQDGTTE-DDTLEGAAIQGDGSVVLSG 329
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BLAST of mRNA_H-paniculata_contig20688.5374.1 vs. uniprot
Match: D7G371_ECTSI (Hemolysin-type calcium-binding region n=1 Tax=Ectocarpus siliculosus TaxID=2880 RepID=D7G371_ECTSI)

HSP 1 Score: 55.1 bits (131), Expect = 1.000e-6
Identity = 32/94 (34.04%), Postives = 45/94 (47.87%), Query Frame = 1 
Query:    1 GSVIWKWQNGTTEDDKFEAXXXXXXXXXXXXXXXXXXXXXXXXXXXXNGTMDFAAVKLGADGTLTWKWQGGDSDGDDELLSASAGADGTVVLAG 282
            G+ +W+WQ+GT +DD  EA                            +   DFAAV L +DG   W+WQ G ++ DD L  A+   DG+VVL+G
Sbjct:  113 GTEVWRWQDGTVQDDVVEAVAHSDDGSAVLAGHTYGSWSSDNADGSFS--KDFAAVMLSSDGKEIWRWQDGTTE-DDTLEGAAIQEDGSVVLSG 203
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BLAST of mRNA_H-paniculata_contig20688.5374.1 vs. uniprot
Match: D8LHV1_ECTSI (Protein kinase domain-containing protein n=1 Tax=Ectocarpus siliculosus TaxID=2880 RepID=D8LHV1_ECTSI)

HSP 1 Score: 54.3 bits (129), Expect = 2.110e-6
Identity = 31/94 (32.98%), Postives = 43/94 (45.74%), Query Frame = 1 
Query:    1 GSVIWKWQNGTTEDDKFEAXXXXXXXXXXXXXXXXXXXXXXXXXXXXNGTMDFAAVKLGADGTLTWKWQGGDSDGDDELLSASAGADGTVVLAG 282
            G+ +W WQ+GT+  D+ +A                                DFAAVKL A+GT  W+WQGG     + + + S   DGTV+LAG
Sbjct:  200 GTTLWTWQDGTSSSDEIQAAAATGDGFVVLAGYTFGEWSGGLTGEE----CDFAAVKLDANGTEVWRWQGGYEVEYNVIYAVSVQEDGTVLLAG 289
The following BLAST results are available for this feature:
BLAST of mRNA_H-paniculata_contig20688.5374.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 vs UniRef90)
Total hits: 3
Match NameE-valueIdentityDescription
A0A6H5LJ25_9PHAE4.180e-735.11Uncharacterized protein n=1 Tax=Ectocarpus sp. CCA... [more]
D7G371_ECTSI1.000e-634.04Hemolysin-type calcium-binding region n=1 Tax=Ecto... [more]
D8LHV1_ECTSI2.110e-632.98Protein kinase domain-containing protein n=1 Tax=E... [more]
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Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
H-paniculata_contig20688contigH-paniculata_contig20688:2625..3864 +
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 vs UniRef902022-09-19
OGS1.0 of Halopteris paniculata Hal_grac_a_UBK monoicous2021-02-24
Properties
Property NameValue
Hectar predicted targeting categoryother localisation
Exons3
Model size289
Cds size288
Stop0
Start0
Relationships

The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_H-paniculata_contig20688.5374.1prot_H-paniculata_contig20688.5374.1Halopteris paniculata Hal_grac_a_UBK monoicouspolypeptideH-paniculata_contig20688 2625..3863 +


The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1622929540.2946932-CDS-H-paniculata_contig20688:2624..26481622929540.2946932-CDS-H-paniculata_contig20688:2624..2648Halopteris paniculata Hal_grac_a_UBK monoicousCDSH-paniculata_contig20688 2625..2648 +
1691480905.0224319-CDS-H-paniculata_contig20688:2624..26481691480905.0224319-CDS-H-paniculata_contig20688:2624..2648Halopteris paniculata Hal_grac_a_UBK monoicousCDSH-paniculata_contig20688 2625..2648 +
1622929540.3136828-CDS-H-paniculata_contig20688:3437..36201622929540.3136828-CDS-H-paniculata_contig20688:3437..3620Halopteris paniculata Hal_grac_a_UBK monoicousCDSH-paniculata_contig20688 3438..3620 +
1691480905.0409348-CDS-H-paniculata_contig20688:3437..36201691480905.0409348-CDS-H-paniculata_contig20688:3437..3620Halopteris paniculata Hal_grac_a_UBK monoicousCDSH-paniculata_contig20688 3438..3620 +
1622929540.3279626-CDS-H-paniculata_contig20688:3782..38631622929540.3279626-CDS-H-paniculata_contig20688:3782..3863Halopteris paniculata Hal_grac_a_UBK monoicousCDSH-paniculata_contig20688 3783..3863 +
1691480905.054501-CDS-H-paniculata_contig20688:3782..38631691480905.054501-CDS-H-paniculata_contig20688:3782..3863Halopteris paniculata Hal_grac_a_UBK monoicousCDSH-paniculata_contig20688 3783..3863 +


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_H-paniculata_contig20688.5374.1

>prot_H-paniculata_contig20688.5374.1 ID=prot_H-paniculata_contig20688.5374.1|Name=mRNA_H-paniculata_contig20688.5374.1|organism=Halopteris paniculata Hal_grac_a_UBK monoicous|type=polypeptide|length=96bp
GSVIWKWQNGTTEDDKFEAAAALDDGSVVLAGGTTSVWSSSTSSSSSNGT
MDFAAVKLGADGTLTWKWQGGDSDGDDELLSASAGADGTVVLAGFC
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mRNA from alignment at H-paniculata_contig20688:2625..3864+

Legend: polypeptideCDS
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_H-paniculata_contig20688.5374.1 ID=mRNA_H-paniculata_contig20688.5374.1|Name=mRNA_H-paniculata_contig20688.5374.1|organism=Halopteris paniculata Hal_grac_a_UBK monoicous|type=mRNA|length=1240bp|location=Sequence derived from alignment at H-paniculata_contig20688:2625..3864+ (Halopteris paniculata Hal_grac_a_UBK monoicous)
GGCAGTGTTATTTGGAAGTGGCAGGTATATCATGGGCGGGTGGGTAGGTG
GGTGGGCCGGTGGGAGTTGATCCTACGCCGATTGATCGTAGGCGGGTTAC
TCTTTTGATTTAGGCAATAAAGGGTGTAATATGCACTGTCGATGCCCATT
GTTTTTTATTTCTTCAATACCTTCTTTATTGAAGTTTGGCTGCGAAGCTG
GCGAACGTGACTAGCGTGTTTCATCGATGGGACTCCGTCTGATCATACCA
TACACACGCAAGATTCACGACGGCGGGAGGCACAGACTTCTTCATTCACC
TGTCTCTCGTTTACCAAACTCGCAGCACGTACTGCGAACTTAAACTCGTG
CGTTTGTGCGGACAAACGCCAATTACCCGCCATCGCTTACTGCTTCGCGC
TTGACGGCCGGACGATGTGCAGTCGATGTCTAGCTGCTTTACAATGATTC
CTACGTTGAGGGCAACCTGCCAACCTCGCCACATACGCGCGCAGTTAGTG
TGAAACAAATTACTGAAATGGCCAAGTCGACCGGCTGTCCTGAAGGAAAA
CGTAAAAACCCTGCGGATGTTATACGTTGTGATTGATTCGTGCCACATTA
CAAGGGAACTTACTCCCATCAACTTGAATAGCAACCCAACTAAAGACAAG
AGACGCGCGCTAGGGCAAATCGAAACTATGGATGATTATTCCTCTTTCTA
ATTCACCGCGTTTATGCGATCTCTCATTCTGTAGTACAATCTCCAAATGC
GAGATATGTCGCTTGCCGAGAGGATCTACACATATTTCTTGTCCGGGTCA
ACGTGGCTGACAGAACGGAACGACGGAAGATGACAAGTTTGAGGCAGCTG
CAGCCCTCGACGATGGTTCGGTTGTCCTGGCAGGAGGAACCACAAGCGTG
TGGTCATCATCAACATCGTCGTCGTCCAGCAATGGAACTATGGATTTTGC
TGCTGTCAAACTCGGGGCCGACGGGACTCTTACCTGGAAGTGGCAGGTAA
GGTAACTATTGTATATTTTTGATGTTTTGCGCTTCCTGTTTCTTTCAATT
ATACAATTCCATGTGCTGTACAGATCCTCCATAGTTACAAATAGACGGCG
ACGACATCGTTGGTTAGCTCTATCGGCGTTATCGCGTGGGGGTTAAATTC
ATCGGCAGGGCGGAGACAGCGATGGCGACGACGAGCTTCTGTCAGCCTCG
GCTGGAGCGGATGGAACGGTGGTCCTCGCCGGTTTCTGCT
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Coding sequence (CDS) from alignment at H-paniculata_contig20688:2625..3864+

>mRNA_H-paniculata_contig20688.5374.1 ID=mRNA_H-paniculata_contig20688.5374.1|Name=mRNA_H-paniculata_contig20688.5374.1|organism=Halopteris paniculata Hal_grac_a_UBK monoicous|type=CDS|length=576bp|location=Sequence derived from alignment at H-paniculata_contig20688:2625..3864+ (Halopteris paniculata Hal_grac_a_UBK monoicous)
GGCAGTGTTATTTGGAAGTGGCAGGGCAGTGTTATTTGGAAGTGGCAGAA
CGGAACGACGGAAGATGACAAGTTTGAGGCAGCTGCAGCCCTCGACGATG
GTTCGGTTGTCCTGGCAGGAGGAACCACAAGCGTGTGGTCATCATCAACA
TCGTCGTCGTCCAGCAATGGAACTATGGATTTTGCTGCTGTCAAACTCGG
GGCCGACGGGACTCTTACCTGGAAGTGGCAGAACGGAACGACGGAAGATG
ACAAGTTTGAGGCAGCTGCAGCCCTCGACGATGGTTCGGTTGTCCTGGCA
GGAGGAACCACAAGCGTGTGGTCATCATCAACATCGTCGTCGTCCAGCAA
TGGAACTATGGATTTTGCTGCTGTCAAACTCGGGGCCGACGGGACTCTTA
CCTGGAAGTGGCAGGGCGGAGACAGCGATGGCGACGACGAGCTTCTGTCA
GCCTCGGCTGGAGCGGATGGAACGGTGGTCCTCGCCGGTTTCTGCGGCGG
AGACAGCGATGGCGACGACGAGCTTCTGTCAGCCTCGGCTGGAGCGGATG
GAACGGTGGTCCTCGCCGGTTTCTGC
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