mRNA_H-paniculata_contig20592.5340.1 (mRNA) Halopteris paniculata Hal_grac_a_UBK monoicous

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_H-paniculata_contig20592.5340.1
Unique NamemRNA_H-paniculata_contig20592.5340.1
TypemRNA
OrganismHalopteris paniculata Hal_grac_a_UBK monoicous (Halopteris paniculata Hal_grac_a_UBK monoicous)
Homology
[Close]
BLAST of mRNA_H-paniculata_contig20592.5340.1 vs. uniprot
Match: D7FWK2_ECTSI (Uncharacterized protein n=1 Tax=Ectocarpus siliculosus TaxID=2880 RepID=D7FWK2_ECTSI)

HSP 1 Score: 162 bits (410), Expect = 4.720e-43
Identity = 100/165 (60.61%), Postives = 115/165 (69.70%), Query Frame = 1 
Query:    1 RQDGWLGVMVTKQAAVFEGESRRMNIEAERIALEKTHVERDSAHLEARGQCMYIYTYREELAQTESAISLQTGGEDERMAKLSLMRMELDGEVKDLEAQLEAKKGALREVMSGLDEGEATVKAVRAKFERQLQRLRERERLVAVSRQDCQKEEEALEAERTRHRE 495
            RQD  LG +V+++AA+FE E+RRMN E ERI L                            +QTE AIS QTGGED RM+KL LMRMEL+GEVKDLEAQLEAK+GALREV+ GLDE E  + AVR KFERQLQRLRERERLV VSRQDCQ EE +L+ +R RHRE
Sbjct:  618 RQDAKLGKLVSERAALFEEENRRMNTEQERIVLXXXXX------------XXXXXXXXXXXSQTEKAISDQTGGEDARMSKLRLMRMELEGEVKDLEAQLEAKRGALREVLVGLDEAEGRISAVRGKFERQLQRLRERERLVEVSRQDCQTEEASLQGDRDRHRE 770
[Close]
BLAST of mRNA_H-paniculata_contig20592.5340.1 vs. uniprot
Match: A0A8J2WVN1_9STRA (Hypothetical protein n=1 Tax=Pelagomonas calceolata TaxID=35677 RepID=A0A8J2WVN1_9STRA)

HSP 1 Score: 73.6 bits (179), Expect = 4.550e-12
Identity = 55/144 (38.19%), Postives = 86/144 (59.72%), Query Frame = 1 
Query:   58 ESRRMNIEAERIALEKTHVERDSAHLEARGQCMYIYTYREELAQTESAISLQTGGEDERMAKLSLMRMELDGEVKDLE---AQLEAKKGALREVMSGLDEGEATVKAVRAKFERQLQRLRERERLVAVSRQDCQKEEEALEAER 480
            E +R+  E ER+A+E+ HV+RD+A +             +E  + E  I  QT G+ ER   L+  R   + E++DL    A LEA++ A   V + LD+ +  +K  R+KFERQLQRL +R+++V  S +DC++E+ AL+AER
Sbjct:  426 EEKRLAAEGERLAMERAHVDRDAALV------------ADEFERMEQLIEQQTSGDLERRDALADQRALKELELEDLRRRVAVLEAERDA---VEAELDDCDGKIKLARSKFERQLQRLAQRDQMVKASAKDCEREQHALDAER 554
[Close]
BLAST of mRNA_H-paniculata_contig20592.5340.1 vs. uniprot
Match: A0A0G4FC01_VITBC (Uncharacterized protein n=2 Tax=Vitrella brassicaformis TaxID=1169539 RepID=A0A0G4FC01_VITBC)

HSP 1 Score: 68.6 bits (166), Expect = 2.550e-10
Identity = 43/139 (30.94%), Postives = 79/139 (56.83%), Query Frame = 1 
Query:   55 GESRRMNIEAERIALEKTHVERDSAHLEARGQCMYIYTYREELAQTESAISLQTGGEDERMAKLSLMRMELDGEVKDLEAQLEAKKGALREVMSGLDEGEATVKAVRAKFERQLQRLRERERLVAVSRQDCQKEEEALE 471
            GE+ R+ +E +RIA+ + H+ERD  H +            EE+AQ E+AI  QTG   +     +  +  +D E+ +LE QL  K+   +++   ++  +  + A+R+KFE+QL R+++ ER +  +++D + +E  LE
Sbjct:  522 GEAHRIQVEEQRIAMARGHIERDHTHSQ------------EEIAQVEAAIDSQTGDHRKERDDAAEQKRTVDAEIIELERQLAEKRAHQKQLGEVIEACDIRIHAIRSKFEKQLHRIQDNERRILEAKEDLKADEAQLE 648
[Close]
BLAST of mRNA_H-paniculata_contig20592.5340.1 vs. uniprot
Match: A0A7S3H7Q3_9STRA (Hypothetical protein n=1 Tax=Spumella elongata TaxID=89044 RepID=A0A7S3H7Q3_9STRA)

HSP 1 Score: 60.1 bits (144), Expect = 2.150e-7
Identity = 47/140 (33.57%), Postives = 71/140 (50.71%), Query Frame = 1 
Query:   58 ESRRMNIEAERIALEKTHVERDSAHLEARGQCMYIYTYREELAQTESAISLQTGGEDERMAKLSLMRMELDGEVKDLEAQLEAKKGALREVMSGLDEGEATVKAVRAKFERQLQRLRERERLVAVSRQDCQKEEEALEAE 477
            E  R+  E ERI LEK H ER+   L    +            +TE AI  QTG    R  +L     +L  E++ L+ QL  K  A +++   LD  +  +  VR K++RQLQR+ +R+  +  S+ +C +EE A+ AE
Sbjct:  536 EDSRIKAELERIGLEKGHFEREEKALSGDSE------------RTEEAIRTQTGDLSSRKQELESSMDDLSEEIRILQEQLALKLAAQQQLARDLDLVDGKIGEVRKKYDRQLQRISDRQHALQQSKAECLEEESAVLAE 663
The following BLAST results are available for this feature:
BLAST of mRNA_H-paniculata_contig20592.5340.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 vs UniRef90)
Total hits: 4
Match NameE-valueIdentityDescription
D7FWK2_ECTSI4.720e-4360.61Uncharacterized protein n=1 Tax=Ectocarpus silicul... [more]
A0A8J2WVN1_9STRA4.550e-1238.19Hypothetical protein n=1 Tax=Pelagomonas calceolat... [more]
A0A0G4FC01_VITBC2.550e-1030.94Uncharacterized protein n=2 Tax=Vitrella brassicaf... [more]
A0A7S3H7Q3_9STRA2.150e-733.57Hypothetical protein n=1 Tax=Spumella elongata Tax... [more]
back to top
Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
H-paniculata_contig20592contigH-paniculata_contig20592:501..1928 +
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 vs UniRef902022-09-19
OGS1.0 of Halopteris paniculata Hal_grac_a_UBK monoicous2021-02-24
Properties
Property NameValue
Taxonomic scopeEukaryota
Seed ortholog score156.4
Seed ortholog evalue1.2e-35
Seed eggNOG ortholog2880.D7FWK2
Hectar predicted targeting categoryother localisation
EggNOG OGs2CNI7@1,2QWH7@2759
Ec32 ortholog descriptionconserved unknown protein
Ec32 orthologEc-25_003380.1
Best tax levelEukaryota
Best eggNOG OGNA|NA|NA
Exons3
Model size516
Cds size492
Stop0
Start1
Relationships

The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_H-paniculata_contig20592.5340.1prot_H-paniculata_contig20592.5340.1Halopteris paniculata Hal_grac_a_UBK monoicouspolypeptideH-paniculata_contig20592 525..1928 +


The following UTR feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1622929536.5817757-UTR-H-paniculata_contig20592:500..5241622929536.5817757-UTR-H-paniculata_contig20592:500..524Halopteris paniculata Hal_grac_a_UBK monoicousUTRH-paniculata_contig20592 501..524 +
1691480903.405136-UTR-H-paniculata_contig20592:500..5241691480903.405136-UTR-H-paniculata_contig20592:500..524Halopteris paniculata Hal_grac_a_UBK monoicousUTRH-paniculata_contig20592 501..524 +


The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1622929536.605793-CDS-H-paniculata_contig20592:524..6741622929536.605793-CDS-H-paniculata_contig20592:524..674Halopteris paniculata Hal_grac_a_UBK monoicousCDSH-paniculata_contig20592 525..674 +
1691480903.4151087-CDS-H-paniculata_contig20592:524..6741691480903.4151087-CDS-H-paniculata_contig20592:524..674Halopteris paniculata Hal_grac_a_UBK monoicousCDSH-paniculata_contig20592 525..674 +
1622929536.625656-CDS-H-paniculata_contig20592:1365..15181622929536.625656-CDS-H-paniculata_contig20592:1365..1518Halopteris paniculata Hal_grac_a_UBK monoicousCDSH-paniculata_contig20592 1366..1518 +
1691480903.423607-CDS-H-paniculata_contig20592:1365..15181691480903.423607-CDS-H-paniculata_contig20592:1365..1518Halopteris paniculata Hal_grac_a_UBK monoicousCDSH-paniculata_contig20592 1366..1518 +
1622929536.6401658-CDS-H-paniculata_contig20592:1739..19281622929536.6401658-CDS-H-paniculata_contig20592:1739..1928Halopteris paniculata Hal_grac_a_UBK monoicousCDSH-paniculata_contig20592 1740..1928 +
1691480903.4324648-CDS-H-paniculata_contig20592:1739..19281691480903.4324648-CDS-H-paniculata_contig20592:1739..1928Halopteris paniculata Hal_grac_a_UBK monoicousCDSH-paniculata_contig20592 1740..1928 +


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_H-paniculata_contig20592.5340.1

>prot_H-paniculata_contig20592.5340.1 ID=prot_H-paniculata_contig20592.5340.1|Name=mRNA_H-paniculata_contig20592.5340.1|organism=Halopteris paniculata Hal_grac_a_UBK monoicous|type=polypeptide|length=164bp
MVTKQAAVFEGESRRMNIEAERIALEKTHVERDSAHLEARGQCMYIYTYR
EELAQTESAISLQTGGEDERMAKLSLMRMELDGEVKDLEAQLEAKKGALR
EVMSGLDEGEATVKAVRAKFERQLQRLRERERLVAVSRQDCQKEEEALEA
ERTRHREAKEKVEK
back to top

mRNA from alignment at H-paniculata_contig20592:501..1928+

Legend: UTRpolypeptideCDS
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_H-paniculata_contig20592.5340.1 ID=mRNA_H-paniculata_contig20592.5340.1|Name=mRNA_H-paniculata_contig20592.5340.1|organism=Halopteris paniculata Hal_grac_a_UBK monoicous|type=mRNA|length=1428bp|location=Sequence derived from alignment at H-paniculata_contig20592:501..1928+ (Halopteris paniculata Hal_grac_a_UBK monoicous)
CGACAGGACGGGTGGCTGGGAGTGATGGTAACTAAGCAAGCGGCTGTATT
CGAAGGGGAGAGCCGTCGCATGAACATCGAAGCGGAGAGGATCGCTCTGG
AGAAGACTCACGTCGAGAGGGATTCAGCACACCTCGAGGCGAGAGGACAG
TGCATGTATATATATACATATCGTGTGGAATAACACCCCCCTTCATCCTG
ATGACGTTCTTATTTTATGTTTTGCTCGAAAACTACGGTTCTATTTTTAT
GATGACACCGAAAGTTGTCGCGTTAGAGAAATTCGTTTTTTCGATATGTA
CAATTGTGTATGTCTACTTTTGCACTTCATTTATTCCATTTTCCCAGACC
CGCGGTCGGAGCATGAGAGCTCTCAAAATGAAAACCAGGTCAATAAGAAA
CATCCGGCATACATCATATCCCTAGTAGCGCATATATCATTAGATGGACA
TGCTCGTTGGTGTATGACAGACAGTGAAGGGTCTTGTTCATGGAGAAAAT
TGAGTTTGCGAAAGTCATAGCCTGCATTAGCGTGATTTTTAGTAATAATT
ACAGTAGACTATCTTCGTGTCAAACCCTCTAATTGTAGTCACTGGAGCAG
ATACACCCGTTGAAATATATATATATATATATATATACATATACATATTC
AGGGTGATAAAAAAAACAATTTTGTCAAATCCCGTTGTAACAGGCATAGG
TACGTGCTGGGAAAGTATAAAAACACTGTTGGCGTCAGTACTGGATCATA
TTCCACGACCATGCTGCTTGGCATTTAAAGGTGGAAAAGCTTACGAGGTG
CATGACAGCTAAATTACCTCTAGTATTGATGTGTTTTTTTAATTTAGCTT
TTCTCCAATCCGCAGGAGGAGTTGGCTCAGACGGAGAGCGCGATATCGCT
GCAGACAGGAGGCGAGGACGAGAGGATGGCCAAGCTTAGCCTCATGCGTA
TGGAACTTGACGGAGAAGTGAAAGACTTGGAGGCGCAGTTGGAGGCCAAG
AAGGGAGCTCTTCGAGAGGTGATGCTAGTAGATGTTGTTGGTGTTGTCAT
GATGTGTCTCTTGGTGTCGATGTTGATGATGGCGGATAACAGTGGTGTTG
ATCCTCGTGGCGATGTTGTTGTCATTGTGTCGTCGTTGTCCTCGTCCTCG
TCCTCGCTGTAACGATCTTATGTTGTAGATCGCTGTCTGTGATGATCAAT
AATGCTTCGGTCCTACTGTTTTATCTGCTTTGCTTGCAGGTGATGTCTGG
TTTGGACGAAGGAGAAGCAACAGTCAAAGCTGTTCGCGCCAAATTCGAGA
GACAGCTGCAGAGGCTCAGGGAGCGGGAGCGCCTGGTGGCCGTGTCGAGG
CAGGACTGTCAGAAGGAAGAAGAAGCCCTCGAAGCCGAAAGGACACGGCA
TCGCGAGGCCAAGGAAAAGGTGGAAAAG
back to top

Coding sequence (CDS) from alignment at H-paniculata_contig20592:501..1928+

>mRNA_H-paniculata_contig20592.5340.1 ID=mRNA_H-paniculata_contig20592.5340.1|Name=mRNA_H-paniculata_contig20592.5340.1|organism=Halopteris paniculata Hal_grac_a_UBK monoicous|type=CDS|length=984bp|location=Sequence derived from alignment at H-paniculata_contig20592:501..1928+ (Halopteris paniculata Hal_grac_a_UBK monoicous)
ATGGTAACTAAGCAAGCGGCTGTATTCGAAGGGGAGAGCCGTCGCATGAA
CATCGAAGCGGAGAGGATCGCTCTGGAGAAGACTCACGTCGAGAGGGATT
CAGCACACCTCGAGGCGAGAGGACAGTGCATGTATATATATACATATCGT
ATGGTAACTAAGCAAGCGGCTGTATTCGAAGGGGAGAGCCGTCGCATGAA
CATCGAAGCGGAGAGGATCGCTCTGGAGAAGACTCACGTCGAGAGGGATT
CAGCACACCTCGAGGCGAGAGGACAGTGCATGTATATATATACATATCGT
GAGGAGTTGGCTCAGACGGAGAGCGCGATATCGCTGCAGACAGGAGGCGA
GGACGAGAGGATGGCCAAGCTTAGCCTCATGCGTATGGAACTTGACGGAG
AAGTGAAAGACTTGGAGGCGCAGTTGGAGGCCAAGAAGGGAGCTCTTCGA
GAGGAGGAGTTGGCTCAGACGGAGAGCGCGATATCGCTGCAGACAGGAGG
CGAGGACGAGAGGATGGCCAAGCTTAGCCTCATGCGTATGGAACTTGACG
GAGAAGTGAAAGACTTGGAGGCGCAGTTGGAGGCCAAGAAGGGAGCTCTT
CGAGAGGTGATGTCTGGTTTGGACGAAGGAGAAGCAACAGTCAAAGCTGT
TCGCGCCAAATTCGAGAGACAGCTGCAGAGGCTCAGGGAGCGGGAGCGCC
TGGTGGCCGTGTCGAGGCAGGACTGTCAGAAGGAAGAAGAAGCCCTCGAA
GCCGAAAGGACACGGCATCGCGAGGCCAAGGAAAAGGTGGAAAAGGTGAT
GTCTGGTTTGGACGAAGGAGAAGCAACAGTCAAAGCTGTTCGCGCCAAAT
TCGAGAGACAGCTGCAGAGGCTCAGGGAGCGGGAGCGCCTGGTGGCCGTG
TCGAGGCAGGACTGTCAGAAGGAAGAAGAAGCCCTCGAAGCCGAAAGGAC
ACGGCATCGCGAGGCCAAGGAAAAGGTGGAAAAG
back to top