prot_H-paniculata_contig20588.5338.1 (polypeptide) Halopteris paniculata Hal_grac_a_UBK monoicous

You are viewing a polypeptide, more information available on the corresponding mRNA page

Overview
NamemRNA_H-paniculata_contig20588.5338.1
Unique Nameprot_H-paniculata_contig20588.5338.1
Typepolypeptide
OrganismHalopteris paniculata Hal_grac_a_UBK monoicous (Halopteris paniculata Hal_grac_a_UBK monoicous)
Sequence length55
Homology
BLAST of mRNA_H-paniculata_contig20588.5338.1 vs. uniprot
Match: A0A182GIT5_AEDAL (Reverse transcriptase Ty1/copia-type domain-containing protein n=2 Tax=Aedes albopictus TaxID=7160 RepID=A0A182GIT5_AEDAL)

HSP 1 Score: 61.6 bits (148), Expect = 1.060e-9
Identity = 32/54 (59.26%), Postives = 39/54 (72.22%), Query Frame = 0
Query:    1 MEEEWRALVKNGTWENEDSGRLPAGRKATRTKWIFKRKLKEDGSTARYKARLLA 54
            M++E  +L +NGTW+  D   LP GRKA   KWIFKRKL EDG+  RYKARL+A
Sbjct:   13 MDDEMTSLRENGTWQLTD---LPPGRKAVGCKWIFKRKLDEDGNVVRYKARLVA 63          
BLAST of mRNA_H-paniculata_contig20588.5338.1 vs. uniprot
Match: A0A5E4G9T3_PRUDU (PREDICTED: Retrovirus-related Pol poly from transposon (Fragment) n=1 Tax=Prunus dulcis TaxID=3755 RepID=A0A5E4G9T3_PRUDU)

HSP 1 Score: 56.2 bits (134), Expect = 3.810e-9
Identity = 32/54 (59.26%), Postives = 36/54 (66.67%), Query Frame = 0
Query:    1 MEEEWRALVKNGTWENEDSGRLPAGRKATRTKWIFKRKLKEDGSTARYKARLLA 54
            M EE RAL KNGTWE      LP G+K    +WI+  KLKEDGS  RYKARL+A
Sbjct:   23 MNEEMRALQKNGTWELVP---LPHGKKTMGCRWIYIVKLKEDGSIERYKARLVA 73          
BLAST of mRNA_H-paniculata_contig20588.5338.1 vs. uniprot
Match: A0A438IEM7_VITVI (Retrovirus-related Pol polyprotein from transposon TNT 1-94 n=1 Tax=Vitis vinifera TaxID=29760 RepID=A0A438IEM7_VITVI)

HSP 1 Score: 58.5 bits (140), Expect = 1.300e-8
Identity = 32/54 (59.26%), Postives = 37/54 (68.52%), Query Frame = 0
Query:    1 MEEEWRALVKNGTWENEDSGRLPAGRKATRTKWIFKRKLKEDGSTARYKARLLA 54
            ++EE RAL KNGTWE  D   LP G+K  R KWIF  K K DG+  RYKARL+A
Sbjct:  920 VDEEVRALEKNGTWEITD---LPRGKKPVRCKWIFTVKYKADGNVDRYKARLVA 970          
BLAST of mRNA_H-paniculata_contig20588.5338.1 vs. uniprot
Match: A5AZT5_VITVI (Integrase catalytic domain-containing protein n=2 Tax=Vitis vinifera TaxID=29760 RepID=A5AZT5_VITVI)

HSP 1 Score: 58.2 bits (139), Expect = 1.780e-8
Identity = 32/54 (59.26%), Postives = 37/54 (68.52%), Query Frame = 0
Query:    1 MEEEWRALVKNGTWENEDSGRLPAGRKATRTKWIFKRKLKEDGSTARYKARLLA 54
            ++EE RAL KNGTWE  D   LP G+K  R KWIF  K K DG+  RYKARL+A
Sbjct:  942 VDEEVRALEKNGTWEITD---LPRGKKPIRCKWIFTIKYKADGNVDRYKARLVA 992          
BLAST of mRNA_H-paniculata_contig20588.5338.1 vs. uniprot
Match: A0A438GMJ8_VITVI (Retrovirus-related Pol polyprotein from transposon TNT 1-94 n=1 Tax=Vitis vinifera TaxID=29760 RepID=A0A438GMJ8_VITVI)

HSP 1 Score: 56.2 bits (134), Expect = 8.520e-8
Identity = 31/54 (57.41%), Postives = 36/54 (66.67%), Query Frame = 0
Query:    1 MEEEWRALVKNGTWENEDSGRLPAGRKATRTKWIFKRKLKEDGSTARYKARLLA 54
            ++EE RAL KNGTWE  D   LP G+K    KWIF  K K DG+  RYKARL+A
Sbjct:  646 IDEEVRALEKNGTWEITD---LPRGKKPVGCKWIFTVKYKSDGNVDRYKARLVA 696          
BLAST of mRNA_H-paniculata_contig20588.5338.1 vs. uniprot
Match: A0A438JCU9_VITVI (Putative mitochondrial protein n=1 Tax=Vitis vinifera TaxID=29760 RepID=A0A438JCU9_VITVI)

HSP 1 Score: 55.8 bits (133), Expect = 8.970e-8
Identity = 31/54 (57.41%), Postives = 36/54 (66.67%), Query Frame = 0
Query:    1 MEEEWRALVKNGTWENEDSGRLPAGRKATRTKWIFKRKLKEDGSTARYKARLLA 54
            ++EE RAL KNGTWE  D   LP G+K    KWIF  K K DG+  RYKARL+A
Sbjct:  169 VDEEVRALEKNGTWEITD---LPRGKKPVGCKWIFTVKYKADGNVDRYKARLVA 219          
BLAST of mRNA_H-paniculata_contig20588.5338.1 vs. uniprot
Match: A0A7C9CYH4_OPUST (Reverse transcriptase Ty1/copia-type domain-containing protein (Fragment) n=1 Tax=Opuntia streptacantha TaxID=393608 RepID=A0A7C9CYH4_OPUST)

HSP 1 Score: 53.9 bits (128), Expect = 1.090e-7
Identity = 31/53 (58.49%), Postives = 35/53 (66.04%), Query Frame = 0
Query:    1 MEEEWRALVKNGTWENEDSGRLPAGRKATRTKWIFKRKLKEDGSTARYKARLL 53
            ME E  AL  N TW   D   LPAG+KA  +KW+FK KLK DGS  RYKARL+
Sbjct:   47 MEAEIDALRLNQTWTEVD---LPAGKKAISSKWVFKIKLKADGSLERYKARLV 96          
BLAST of mRNA_H-paniculata_contig20588.5338.1 vs. uniprot
Match: A0A438C7W4_VITVI (Retrovirus-related Pol polyprotein from transposon RE2 n=2 Tax=Vitis vinifera TaxID=29760 RepID=A0A438C7W4_VITVI)

HSP 1 Score: 55.8 bits (133), Expect = 1.160e-7
Identity = 31/54 (57.41%), Postives = 36/54 (66.67%), Query Frame = 0
Query:    1 MEEEWRALVKNGTWENEDSGRLPAGRKATRTKWIFKRKLKEDGSTARYKARLLA 54
            ++EE RAL KNGTWE  D   LP G+K    KWIF  K K DG+  RYKARL+A
Sbjct:   48 VDEEVRALEKNGTWEITD---LPRGKKPVGCKWIFTVKYKADGNVDRYKARLVA 98          
BLAST of mRNA_H-paniculata_contig20588.5338.1 vs. uniprot
Match: A0A438CK78_VITVI (Retrovirus-related Pol polyprotein from transposon TNT 1-94 n=1 Tax=Vitis vinifera TaxID=29760 RepID=A0A438CK78_VITVI)

HSP 1 Score: 55.8 bits (133), Expect = 1.160e-7
Identity = 31/54 (57.41%), Postives = 36/54 (66.67%), Query Frame = 0
Query:    1 MEEEWRALVKNGTWENEDSGRLPAGRKATRTKWIFKRKLKEDGSTARYKARLLA 54
            ++EE RAL KNGTWE  D   LP G+K    KWIF  K K DG+  RYKARL+A
Sbjct:  365 VDEEVRALEKNGTWEITD---LPRGKKPVGCKWIFTVKYKADGNVDRYKARLVA 415          
BLAST of mRNA_H-paniculata_contig20588.5338.1 vs. uniprot
Match: A0A438F8D9_VITVI (Retrovirus-related Pol polyprotein from transposon RE1 n=2 Tax=Vitis vinifera TaxID=29760 RepID=A0A438F8D9_VITVI)

HSP 1 Score: 55.8 bits (133), Expect = 1.160e-7
Identity = 31/54 (57.41%), Postives = 36/54 (66.67%), Query Frame = 0
Query:    1 MEEEWRALVKNGTWENEDSGRLPAGRKATRTKWIFKRKLKEDGSTARYKARLLA 54
            ++EE RAL KNGTWE  D   LP G+K    KWIF  K K DG+  RYKARL+A
Sbjct:  169 VDEEVRALEKNGTWEITD---LPRGKKPVGCKWIFTVKYKADGNVDRYKARLVA 219          
The following BLAST results are available for this feature:
BLAST of mRNA_H-paniculata_contig20588.5338.1 vs. uniprot
Analysis Date: 2022-09-16 (Diamond blastp: OGS1.0 vs UniRef90)
Total hits: 25
Match NameE-valueIdentityDescription
A0A182GIT5_AEDAL1.060e-959.26Reverse transcriptase Ty1/copia-type domain-contai... [more]
A0A5E4G9T3_PRUDU3.810e-959.26PREDICTED: Retrovirus-related Pol poly from transp... [more]
A0A438IEM7_VITVI1.300e-859.26Retrovirus-related Pol polyprotein from transposon... [more]
A5AZT5_VITVI1.780e-859.26Integrase catalytic domain-containing protein n=2 ... [more]
A0A438GMJ8_VITVI8.520e-857.41Retrovirus-related Pol polyprotein from transposon... [more]
A0A438JCU9_VITVI8.970e-857.41Putative mitochondrial protein n=1 Tax=Vitis vinif... [more]
A0A7C9CYH4_OPUST1.090e-758.49Reverse transcriptase Ty1/copia-type domain-contai... [more]
A0A438C7W4_VITVI1.160e-757.41Retrovirus-related Pol polyprotein from transposon... [more]
A0A438CK78_VITVI1.160e-757.41Retrovirus-related Pol polyprotein from transposon... [more]
A0A438F8D9_VITVI1.160e-757.41Retrovirus-related Pol polyprotein from transposon... [more]

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Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
H-paniculata_contig20588contigH-paniculata_contig20588:570..734 -
Analyses
This polypeptide is derived from or has results from the following analyses
Analysis NameDate Performed
InterProScan on OGS1.02022-09-29
Diamond blastp: OGS1.0 vs UniRef902022-09-16
OGS1.0 of Halopteris paniculata Hal_grac_a_UBK monoicous2021-02-24
Relationships

This polypeptide derives from the following mRNA feature(s):

Feature NameUnique NameSpeciesTypePosition
mRNA_H-paniculata_contig20588.5338.1mRNA_H-paniculata_contig20588.5338.1Halopteris paniculata Hal_grac_a_UBK monoicousmRNAH-paniculata_contig20588 160..794 -


Sequences
The following sequences are available for this feature:

polypeptide sequence

>prot_H-paniculata_contig20588.5338.1 ID=prot_H-paniculata_contig20588.5338.1|Name=mRNA_H-paniculata_contig20588.5338.1|organism=Halopteris paniculata Hal_grac_a_UBK monoicous|type=polypeptide|length=55bp
MEEEWRALVKNGTWENEDSGRLPAGRKATRTKWIFKRKLKEDGSTARYKA
RLLA*
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