mRNA_H-paniculata_contig20567.5334.1 (mRNA) Halopteris paniculata Hal_grac_a_UBK monoicous

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_H-paniculata_contig20567.5334.1
Unique NamemRNA_H-paniculata_contig20567.5334.1
TypemRNA
OrganismHalopteris paniculata Hal_grac_a_UBK monoicous (Halopteris paniculata Hal_grac_a_UBK monoicous)
Homology
BLAST of mRNA_H-paniculata_contig20567.5334.1 vs. uniprot
Match: A0A8J4AXG8_9CHLO (Uncharacterized protein n=1 Tax=Volvox africanus TaxID=51714 RepID=A0A8J4AXG8_9CHLO)

HSP 1 Score: 67.4 bits (163), Expect = 4.730e-11
Identity = 29/66 (43.94%), Postives = 47/66 (71.21%), Query Frame = 1
Query:   79 KPLGGQFNFSYKTNEMGDVVKLKARLVADGRTQIQDIDYDEVFAPTPSAAAVKTVLAVAVQEDLQL 276
            +PL  ++ ++ K +E GD+++ KARLVA G TQ++ +DYDEV+AP    A ++ +LAV  + DL+L
Sbjct: 1032 RPLAVKWVYTVKRDEQGDILRYKARLVAKGYTQVEGVDYDEVYAPVSKHATLRALLAVVAERDLEL 1097          
BLAST of mRNA_H-paniculata_contig20567.5334.1 vs. uniprot
Match: A0A4Y9XTU1_9APHY (Integrase catalytic domain-containing protein n=1 Tax=Fomitopsis rosea TaxID=34475 RepID=A0A4Y9XTU1_9APHY)

HSP 1 Score: 65.5 bits (158), Expect = 2.250e-10
Identity = 30/66 (45.45%), Postives = 45/66 (68.18%), Query Frame = 1
Query:   79 KPLGGQFNFSYKTNEMGDVVKLKARLVADGRTQIQDIDYDEVFAPTPSAAAVKTVLAVAVQEDLQL 276
            K +G ++ F  K    G++ K KARLVA G TQ++D+DYDE FAPT   + ++T+LA+A   DL++
Sbjct:  991 KVVGCKWVFKIKRGPDGEIEKYKARLVAKGFTQVEDVDYDETFAPTTKFSTIRTLLALAAAHDLEI 1056          
BLAST of mRNA_H-paniculata_contig20567.5334.1 vs. uniprot
Match: A0A6H5JNP9_9PHAE (Reverse transcriptase Ty1/copia-type domain-containing protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5JNP9_9PHAE)

HSP 1 Score: 64.7 bits (156), Expect = 3.810e-10
Identity = 32/66 (48.48%), Postives = 46/66 (69.70%), Query Frame = 1
Query:   79 KPLGGQFNFSYKTNEMGDVVKLKARLVADGRTQIQDIDYDEVFAPTPSAAAVKTVLAVAVQEDLQL 276
            K +G ++ FS+KTNE G +V  KAR+VA G +QI  ID+   F+  PSAA++KTV+AVA ++   L
Sbjct:  151 KAIGSKWVFSWKTNEKGLIVDFKARMVARGFSQIHGIDFHHSFSACPSAASIKTVIAVATEKGKNL 216          
BLAST of mRNA_H-paniculata_contig20567.5334.1 vs. uniprot
Match: A0A6H5LAZ3_9PHAE (Reverse transcriptase Ty1/copia-type domain-containing protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5LAZ3_9PHAE)

HSP 1 Score: 61.2 bits (147), Expect = 1.070e-9
Identity = 30/66 (45.45%), Postives = 47/66 (71.21%), Query Frame = 1
Query:   79 KPLGGQFNFSYKTNEMGDVVKLKARLVADGRTQIQDIDYDEVFAPTPSAAAVKTVLAVAVQEDLQL 276
            K +G ++ FS+KTNE G +V  KAR+VA G ++I  ID+    + +PSAA++KTV+AVA ++  +L
Sbjct:   43 KAIGSKWVFSWKTNEKGLIVDFKARMVARGFSEIPGIDFHHSSSASPSAASIKTVIAVATEKGKKL 108          
BLAST of mRNA_H-paniculata_contig20567.5334.1 vs. uniprot
Match: A0A6H5KQV1_9PHAE (Reverse transcriptase Ty1/copia-type domain-containing protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5KQV1_9PHAE)

HSP 1 Score: 59.7 bits (143), Expect = 1.120e-9
Identity = 29/62 (46.77%), Postives = 44/62 (70.97%), Query Frame = 1
Query:   79 KPLGGQFNFSYKTNEMGDVVKLKARLVADGRTQIQDIDYDEVFAPTPSAAAVKTVLAVAVQE 264
            K +G ++ F++KTNE G +V  KAR+VA G +QI  ID+    +  PSAA++KTV+AVA ++
Sbjct:   25 KAIGSKWMFAWKTNETGLIVDFKARMVARGFSQIPGIDFHHSSSACPSAASIKTVIAVATEK 86          
BLAST of mRNA_H-paniculata_contig20567.5334.1 vs. uniprot
Match: UPI00090118BB (uncharacterized protein LOC109163335 n=1 Tax=Ipomoea nil TaxID=35883 RepID=UPI00090118BB)

HSP 1 Score: 59.7 bits (143), Expect = 2.530e-9
Identity = 30/65 (46.15%), Postives = 42/65 (64.62%), Query Frame = 1
Query:   85 LGGQFNFSYKTNEMGDVVKLKARLVADGRTQIQDIDYDEVFAPTPSAAAVKTVLAVAVQEDLQLF 279
            +G ++ F  KT+E G++ + KARLVA G TQI+ IDYDE FAP     +++ +LAVA      LF
Sbjct:   67 IGTKWIFKNKTDEAGNIARNKARLVAQGYTQIEGIDYDETFAPVARLESIRILLAVACILGFTLF 131          
BLAST of mRNA_H-paniculata_contig20567.5334.1 vs. uniprot
Match: A0A6H5K282_9PHAE (Reverse transcriptase Ty1/copia-type domain-containing protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5K282_9PHAE)

HSP 1 Score: 61.2 bits (147), Expect = 3.150e-9
Identity = 31/66 (46.97%), Postives = 46/66 (69.70%), Query Frame = 1
Query:   79 KPLGGQFNFSYKTNEMGDVVKLKARLVADGRTQIQDIDYDEVFAPTPSAAAVKTVLAVAVQEDLQL 276
            K +G ++ FS+KTNE G +V  KAR+VA G +QI  ID+  + +  PSAA++KTV+AVA  +  +L
Sbjct:  165 KAIGSKWVFSWKTNEKGLIVDFKARMVARGFSQIPGIDFHHLSSACPSAASIKTVIAVATVKGKKL 230          
BLAST of mRNA_H-paniculata_contig20567.5334.1 vs. uniprot
Match: A0A6H5L4A4_9PHAE (Reverse transcriptase Ty1/copia-type domain-containing protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5L4A4_9PHAE)

HSP 1 Score: 62.0 bits (149), Expect = 3.510e-9
Identity = 30/66 (45.45%), Postives = 46/66 (69.70%), Query Frame = 1
Query:   79 KPLGGQFNFSYKTNEMGDVVKLKARLVADGRTQIQDIDYDEVFAPTPSAAAVKTVLAVAVQEDLQL 276
            K +G ++ FS+KTNE G +V  K+R++A G +QI  ID+   F+  PSAA++KTV+AVA +   +L
Sbjct:   25 KAIGSKWVFSWKTNEKGLIVDFKSRMIARGFSQIPGIDFHHSFSACPSAASIKTVIAVATEMGKKL 90          
BLAST of mRNA_H-paniculata_contig20567.5334.1 vs. uniprot
Match: UPI000CED754C (uncharacterized protein LOC112097851 n=1 Tax=Citrus clementina TaxID=85681 RepID=UPI000CED754C)

HSP 1 Score: 62.0 bits (149), Expect = 3.650e-9
Identity = 29/65 (44.62%), Postives = 43/65 (66.15%), Query Frame = 1
Query:   85 LGGQFNFSYKTNEMGDVVKLKARLVADGRTQIQDIDYDEVFAPTPSAAAVKTVLAVAVQEDLQLF 279
            +G ++ F  KTNE G++V+ KARLVA G TQI+ +D+DE FAP     +++ + AVA     +LF
Sbjct:  785 IGTKWIFKNKTNEFGNIVRNKARLVAQGYTQIEGVDFDETFAPVARIESIRLIFAVACLIGFKLF 849          
BLAST of mRNA_H-paniculata_contig20567.5334.1 vs. uniprot
Match: A0A6H5KPX2_9PHAE (Reverse transcriptase Ty1/copia-type domain-containing protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5KPX2_9PHAE)

HSP 1 Score: 61.6 bits (148), Expect = 3.680e-9
Identity = 31/66 (46.97%), Postives = 46/66 (69.70%), Query Frame = 1
Query:   79 KPLGGQFNFSYKTNEMGDVVKLKARLVADGRTQIQDIDYDEVFAPTPSAAAVKTVLAVAVQEDLQL 276
            K +G ++ FS+KTNE G +V  KAR+VA G +QI  ID+    +  PSAA++KTV+AVA ++  +L
Sbjct:  151 KAIGSKWVFSWKTNEKGLIVDFKARMVARGFSQIPGIDFHHSSSACPSAASIKTVIAVATEKGKKL 216          
The following BLAST results are available for this feature:
BLAST of mRNA_H-paniculata_contig20567.5334.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 vs UniRef90)
Total hits: 25
Match NameE-valueIdentityDescription
A0A8J4AXG8_9CHLO4.730e-1143.94Uncharacterized protein n=1 Tax=Volvox africanus T... [more]
A0A4Y9XTU1_9APHY2.250e-1045.45Integrase catalytic domain-containing protein n=1 ... [more]
A0A6H5JNP9_9PHAE3.810e-1048.48Reverse transcriptase Ty1/copia-type domain-contai... [more]
A0A6H5LAZ3_9PHAE1.070e-945.45Reverse transcriptase Ty1/copia-type domain-contai... [more]
A0A6H5KQV1_9PHAE1.120e-946.77Reverse transcriptase Ty1/copia-type domain-contai... [more]
UPI00090118BB2.530e-946.15uncharacterized protein LOC109163335 n=1 Tax=Ipomo... [more]
A0A6H5K282_9PHAE3.150e-946.97Reverse transcriptase Ty1/copia-type domain-contai... [more]
A0A6H5L4A4_9PHAE3.510e-945.45Reverse transcriptase Ty1/copia-type domain-contai... [more]
UPI000CED754C3.650e-944.62uncharacterized protein LOC112097851 n=1 Tax=Citru... [more]
A0A6H5KPX2_9PHAE3.680e-946.97Reverse transcriptase Ty1/copia-type domain-contai... [more]

Pages

back to top
Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
H-paniculata_contig20567contigH-paniculata_contig20567:4320..4598 +
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 vs UniRef902022-09-19
OGS1.0 of Halopteris paniculata Hal_grac_a_UBK monoicous2021-02-24
Properties
Property NameValue
Hectar predicted targeting categoryno signal peptide or anchor
Exons1
Model size280
Cds size156
Stop0
Start1
Relationships

The following UTR feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1622929535.9869847-UTR-H-paniculata_contig20567:4319..44421622929535.9869847-UTR-H-paniculata_contig20567:4319..4442Halopteris paniculata Hal_grac_a_UBK monoicousUTRH-paniculata_contig20567 4320..4442 +
1691480903.1682646-UTR-H-paniculata_contig20567:4319..44421691480903.1682646-UTR-H-paniculata_contig20567:4319..4442Halopteris paniculata Hal_grac_a_UBK monoicousUTRH-paniculata_contig20567 4320..4442 +


The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1622929536.0041847-CDS-H-paniculata_contig20567:4442..45981622929536.0041847-CDS-H-paniculata_contig20567:4442..4598Halopteris paniculata Hal_grac_a_UBK monoicousCDSH-paniculata_contig20567 4443..4598 +
1691480903.176799-CDS-H-paniculata_contig20567:4442..45981691480903.176799-CDS-H-paniculata_contig20567:4442..4598Halopteris paniculata Hal_grac_a_UBK monoicousCDSH-paniculata_contig20567 4443..4598 +


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_H-paniculata_contig20567.5334.1prot_H-paniculata_contig20567.5334.1Halopteris paniculata Hal_grac_a_UBK monoicouspolypeptideH-paniculata_contig20567 4443..4598 +


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_H-paniculata_contig20567.5334.1

>prot_H-paniculata_contig20567.5334.1 ID=prot_H-paniculata_contig20567.5334.1|Name=mRNA_H-paniculata_contig20567.5334.1|organism=Halopteris paniculata Hal_grac_a_UBK monoicous|type=polypeptide|length=52bp
MGDVVKLKARLVADGRTQIQDIDYDEVFAPTPSAAAVKTVLAVAVQEDLQ
LF
back to top

mRNA from alignment at H-paniculata_contig20567:4320..4598+

Legend: UTRpolypeptideCDS
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_H-paniculata_contig20567.5334.1 ID=mRNA_H-paniculata_contig20567.5334.1|Name=mRNA_H-paniculata_contig20567.5334.1|organism=Halopteris paniculata Hal_grac_a_UBK monoicous|type=mRNA|length=279bp|location=Sequence derived from alignment at H-paniculata_contig20567:4320..4598+ (Halopteris paniculata Hal_grac_a_UBK monoicous)
GGAGGAGGCGATTCAATGAGAGATGGGGAGCCATGCTAAGACTGAAACTT TTACCGTAGTAAGTGACAATGAAGGGAGAAACCTTTGGGGGGGCAGTTCA ATTTTTCGTATAAAACTAACGAGATGGGGGATGTAGTGAAGTTGAAAGCC AGATTGGTAGCCGATGGAAGGACACAAATCCAAGACATAGACTACGACGA AGTTTTTGCACCTACTCCTTCCGCCGCTGCTGTAAAGACGGTGTTAGCCG TAGCAGTACAGGAGGATTTACAACTATTT
back to top

Coding sequence (CDS) from alignment at H-paniculata_contig20567:4320..4598+

>mRNA_H-paniculata_contig20567.5334.1 ID=mRNA_H-paniculata_contig20567.5334.1|Name=mRNA_H-paniculata_contig20567.5334.1|organism=Halopteris paniculata Hal_grac_a_UBK monoicous|type=CDS|length=312bp|location=Sequence derived from alignment at H-paniculata_contig20567:4320..4598+ (Halopteris paniculata Hal_grac_a_UBK monoicous)
ATGGGGGATGTAGTGAAGTTGAAAGCCAGATTGGTAGCCGATGGAAGGAC
ACAAATCCAAGACATAGACTACGACGAAGTTTTTGCACCTACTCCTTCCG
CCGCTGCTGTAAAGACGGTGTTAGCCGTAGCAGTACAGGAGGATTTACAA
CTATTTATGGGGGATGTAGTGAAGTTGAAAGCCAGATTGGTAGCCGATGG
AAGGACACAAATCCAAGACATAGACTACGACGAAGTTTTTGCACCTACTC
CTTCCGCCGCTGCTGTAAAGACGGTGTTAGCCGTAGCAGTACAGGAGGAT
TTACAACTATTT
back to top