mRNA_H-paniculata_contig20567.5334.1 (mRNA) Halopteris paniculata Hal_grac_a_UBK monoicous
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Overview
Homology
BLAST of mRNA_H-paniculata_contig20567.5334.1 vs. uniprot
Match: A0A8J4AXG8_9CHLO (Uncharacterized protein n=1 Tax=Volvox africanus TaxID=51714 RepID=A0A8J4AXG8_9CHLO) HSP 1 Score: 67.4 bits (163), Expect = 4.730e-11 Identity = 29/66 (43.94%), Postives = 47/66 (71.21%), Query Frame = 1
Query: 79 KPLGGQFNFSYKTNEMGDVVKLKARLVADGRTQIQDIDYDEVFAPTPSAAAVKTVLAVAVQEDLQL 276
+PL ++ ++ K +E GD+++ KARLVA G TQ++ +DYDEV+AP A ++ +LAV + DL+L
Sbjct: 1032 RPLAVKWVYTVKRDEQGDILRYKARLVAKGYTQVEGVDYDEVYAPVSKHATLRALLAVVAERDLEL 1097
BLAST of mRNA_H-paniculata_contig20567.5334.1 vs. uniprot
Match: A0A4Y9XTU1_9APHY (Integrase catalytic domain-containing protein n=1 Tax=Fomitopsis rosea TaxID=34475 RepID=A0A4Y9XTU1_9APHY) HSP 1 Score: 65.5 bits (158), Expect = 2.250e-10 Identity = 30/66 (45.45%), Postives = 45/66 (68.18%), Query Frame = 1
Query: 79 KPLGGQFNFSYKTNEMGDVVKLKARLVADGRTQIQDIDYDEVFAPTPSAAAVKTVLAVAVQEDLQL 276
K +G ++ F K G++ K KARLVA G TQ++D+DYDE FAPT + ++T+LA+A DL++
Sbjct: 991 KVVGCKWVFKIKRGPDGEIEKYKARLVAKGFTQVEDVDYDETFAPTTKFSTIRTLLALAAAHDLEI 1056
BLAST of mRNA_H-paniculata_contig20567.5334.1 vs. uniprot
Match: A0A6H5JNP9_9PHAE (Reverse transcriptase Ty1/copia-type domain-containing protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5JNP9_9PHAE) HSP 1 Score: 64.7 bits (156), Expect = 3.810e-10 Identity = 32/66 (48.48%), Postives = 46/66 (69.70%), Query Frame = 1
Query: 79 KPLGGQFNFSYKTNEMGDVVKLKARLVADGRTQIQDIDYDEVFAPTPSAAAVKTVLAVAVQEDLQL 276
K +G ++ FS+KTNE G +V KAR+VA G +QI ID+ F+ PSAA++KTV+AVA ++ L
Sbjct: 151 KAIGSKWVFSWKTNEKGLIVDFKARMVARGFSQIHGIDFHHSFSACPSAASIKTVIAVATEKGKNL 216
BLAST of mRNA_H-paniculata_contig20567.5334.1 vs. uniprot
Match: A0A6H5LAZ3_9PHAE (Reverse transcriptase Ty1/copia-type domain-containing protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5LAZ3_9PHAE) HSP 1 Score: 61.2 bits (147), Expect = 1.070e-9 Identity = 30/66 (45.45%), Postives = 47/66 (71.21%), Query Frame = 1
Query: 79 KPLGGQFNFSYKTNEMGDVVKLKARLVADGRTQIQDIDYDEVFAPTPSAAAVKTVLAVAVQEDLQL 276
K +G ++ FS+KTNE G +V KAR+VA G ++I ID+ + +PSAA++KTV+AVA ++ +L
Sbjct: 43 KAIGSKWVFSWKTNEKGLIVDFKARMVARGFSEIPGIDFHHSSSASPSAASIKTVIAVATEKGKKL 108
BLAST of mRNA_H-paniculata_contig20567.5334.1 vs. uniprot
Match: A0A6H5KQV1_9PHAE (Reverse transcriptase Ty1/copia-type domain-containing protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5KQV1_9PHAE) HSP 1 Score: 59.7 bits (143), Expect = 1.120e-9 Identity = 29/62 (46.77%), Postives = 44/62 (70.97%), Query Frame = 1
Query: 79 KPLGGQFNFSYKTNEMGDVVKLKARLVADGRTQIQDIDYDEVFAPTPSAAAVKTVLAVAVQE 264
K +G ++ F++KTNE G +V KAR+VA G +QI ID+ + PSAA++KTV+AVA ++
Sbjct: 25 KAIGSKWMFAWKTNETGLIVDFKARMVARGFSQIPGIDFHHSSSACPSAASIKTVIAVATEK 86
BLAST of mRNA_H-paniculata_contig20567.5334.1 vs. uniprot
Match: UPI00090118BB (uncharacterized protein LOC109163335 n=1 Tax=Ipomoea nil TaxID=35883 RepID=UPI00090118BB) HSP 1 Score: 59.7 bits (143), Expect = 2.530e-9 Identity = 30/65 (46.15%), Postives = 42/65 (64.62%), Query Frame = 1
Query: 85 LGGQFNFSYKTNEMGDVVKLKARLVADGRTQIQDIDYDEVFAPTPSAAAVKTVLAVAVQEDLQLF 279
+G ++ F KT+E G++ + KARLVA G TQI+ IDYDE FAP +++ +LAVA LF
Sbjct: 67 IGTKWIFKNKTDEAGNIARNKARLVAQGYTQIEGIDYDETFAPVARLESIRILLAVACILGFTLF 131
BLAST of mRNA_H-paniculata_contig20567.5334.1 vs. uniprot
Match: A0A6H5K282_9PHAE (Reverse transcriptase Ty1/copia-type domain-containing protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5K282_9PHAE) HSP 1 Score: 61.2 bits (147), Expect = 3.150e-9 Identity = 31/66 (46.97%), Postives = 46/66 (69.70%), Query Frame = 1
Query: 79 KPLGGQFNFSYKTNEMGDVVKLKARLVADGRTQIQDIDYDEVFAPTPSAAAVKTVLAVAVQEDLQL 276
K +G ++ FS+KTNE G +V KAR+VA G +QI ID+ + + PSAA++KTV+AVA + +L
Sbjct: 165 KAIGSKWVFSWKTNEKGLIVDFKARMVARGFSQIPGIDFHHLSSACPSAASIKTVIAVATVKGKKL 230
BLAST of mRNA_H-paniculata_contig20567.5334.1 vs. uniprot
Match: A0A6H5L4A4_9PHAE (Reverse transcriptase Ty1/copia-type domain-containing protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5L4A4_9PHAE) HSP 1 Score: 62.0 bits (149), Expect = 3.510e-9 Identity = 30/66 (45.45%), Postives = 46/66 (69.70%), Query Frame = 1
Query: 79 KPLGGQFNFSYKTNEMGDVVKLKARLVADGRTQIQDIDYDEVFAPTPSAAAVKTVLAVAVQEDLQL 276
K +G ++ FS+KTNE G +V K+R++A G +QI ID+ F+ PSAA++KTV+AVA + +L
Sbjct: 25 KAIGSKWVFSWKTNEKGLIVDFKSRMIARGFSQIPGIDFHHSFSACPSAASIKTVIAVATEMGKKL 90
BLAST of mRNA_H-paniculata_contig20567.5334.1 vs. uniprot
Match: UPI000CED754C (uncharacterized protein LOC112097851 n=1 Tax=Citrus clementina TaxID=85681 RepID=UPI000CED754C) HSP 1 Score: 62.0 bits (149), Expect = 3.650e-9 Identity = 29/65 (44.62%), Postives = 43/65 (66.15%), Query Frame = 1
Query: 85 LGGQFNFSYKTNEMGDVVKLKARLVADGRTQIQDIDYDEVFAPTPSAAAVKTVLAVAVQEDLQLF 279
+G ++ F KTNE G++V+ KARLVA G TQI+ +D+DE FAP +++ + AVA +LF
Sbjct: 785 IGTKWIFKNKTNEFGNIVRNKARLVAQGYTQIEGVDFDETFAPVARIESIRLIFAVACLIGFKLF 849
BLAST of mRNA_H-paniculata_contig20567.5334.1 vs. uniprot
Match: A0A6H5KPX2_9PHAE (Reverse transcriptase Ty1/copia-type domain-containing protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5KPX2_9PHAE) HSP 1 Score: 61.6 bits (148), Expect = 3.680e-9 Identity = 31/66 (46.97%), Postives = 46/66 (69.70%), Query Frame = 1
Query: 79 KPLGGQFNFSYKTNEMGDVVKLKARLVADGRTQIQDIDYDEVFAPTPSAAAVKTVLAVAVQEDLQL 276
K +G ++ FS+KTNE G +V KAR+VA G +QI ID+ + PSAA++KTV+AVA ++ +L
Sbjct: 151 KAIGSKWVFSWKTNEKGLIVDFKARMVARGFSQIPGIDFHHSSSACPSAASIKTVIAVATEKGKKL 216 The following BLAST results are available for this feature:
BLAST of mRNA_H-paniculata_contig20567.5334.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 vs UniRef90) Total hits: 25
Pagesback to topAlignments
The following features are aligned
Analyses
This mRNA is derived from or has results from the following analyses
Properties
Relationships
The following UTR feature(s) are a part of this mRNA:
The following CDS feature(s) are a part of this mRNA:
The following polypeptide feature(s) derives from this mRNA:
Sequences
The following sequences are available for this feature:
protein sequence of mRNA_H-paniculata_contig20567.5334.1 >prot_H-paniculata_contig20567.5334.1 ID=prot_H-paniculata_contig20567.5334.1|Name=mRNA_H-paniculata_contig20567.5334.1|organism=Halopteris paniculata Hal_grac_a_UBK monoicous|type=polypeptide|length=52bp MGDVVKLKARLVADGRTQIQDIDYDEVFAPTPSAAAVKTVLAVAVQEDLQback to top mRNA from alignment at H-paniculata_contig20567:4320..4598+ Legend: UTRpolypeptideCDS Hold the cursor over a type above to highlight its positions in the sequence below.>mRNA_H-paniculata_contig20567.5334.1 ID=mRNA_H-paniculata_contig20567.5334.1|Name=mRNA_H-paniculata_contig20567.5334.1|organism=Halopteris paniculata Hal_grac_a_UBK monoicous|type=mRNA|length=279bp|location=Sequence derived from alignment at H-paniculata_contig20567:4320..4598+ (Halopteris paniculata Hal_grac_a_UBK monoicous)back to top Coding sequence (CDS) from alignment at H-paniculata_contig20567:4320..4598+ >mRNA_H-paniculata_contig20567.5334.1 ID=mRNA_H-paniculata_contig20567.5334.1|Name=mRNA_H-paniculata_contig20567.5334.1|organism=Halopteris paniculata Hal_grac_a_UBK monoicous|type=CDS|length=312bp|location=Sequence derived from alignment at H-paniculata_contig20567:4320..4598+ (Halopteris paniculata Hal_grac_a_UBK monoicous)back to top |