mRNA_H-paniculata_contig20522.5320.1 (mRNA) Halopteris paniculata Hal_grac_a_UBK monoicous

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_H-paniculata_contig20522.5320.1
Unique NamemRNA_H-paniculata_contig20522.5320.1
TypemRNA
OrganismHalopteris paniculata Hal_grac_a_UBK monoicous (Halopteris paniculata Hal_grac_a_UBK monoicous)
Homology
BLAST of mRNA_H-paniculata_contig20522.5320.1 vs. uniprot
Match: A0A6H5L5E2_9PHAE (Uncharacterized protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5L5E2_9PHAE)

HSP 1 Score: 202 bits (514), Expect = 5.870e-56
Identity = 118/291 (40.55%), Postives = 166/291 (57.04%), Query Frame = 2
Query:   83 VDEEIAKRAVEAVKRKEETIRSAALKFQVSPTSIANRMASREEMAGRPGSPMVLTAEEEATIEDLLVCAGRHCLGITRPELVENVR*LCNGGRNLPWDPLKGPGKAWFAAFFKRHPRLALDSSRIYEANRMSTDYRSRLKTFYDGWQELFVEVQPAPT-HIWNNDETG-------------------------------------------LNP----KGQRVQAAWVCNR-APPDSWYAATDSSFIQGSGYLSFMKKFKEFIDNSGLNDGEPHVLFLYGHASHVTIDVLK 808
            VD E A++A+EAV+    ++R+AA  + V+  S++ R+   E M  + G   VLT EEE+ +ED L+ A RH +GI R  L E+VR LCN GR++PWD   GPG++W   FFKRHP L+  S+RIYEANR+ +D  +RL+TFY  + E FV+ +  P  H+WN DETG                                           L P    KGQR+QA WV  R  PP++  A  DSSF+QG+ ++++++ F   + + GL +G PHVL L GHASHVT +V+K
Sbjct:    6 VDPEQAQKAIEAVRSGAMSLRAAAQAYGVNKRSLSRRLTGDESMDAKVGPRTVLTVEEESFVEDALLYAARHFIGIDRTALQEHVRQLCNDGRDIPWDAAVGPGRSWLDGFFKRHPALSERSARIYEANRIMSDDETRLQTFYKDFGE-FVDKEKIPADHLWNTDETGSTSQGTKTMKVITESGQKVGGAMRSNSRENVTVVVTISAAGATLAPWIIYKGQRLQADWVKGRNGPPNARLAVIDSSFMQGTVFVNYIRDFHRQLLDRGLINGTPHVLVLDGHASHVTYEVVK 295          
BLAST of mRNA_H-paniculata_contig20522.5320.1 vs. uniprot
Match: A0A6H5KJ62_9PHAE (Uncharacterized protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5KJ62_9PHAE)

HSP 1 Score: 194 bits (493), Expect = 6.770e-54
Identity = 107/293 (36.52%), Postives = 156/293 (53.24%), Query Frame = 2
Query:   74 KKSVDEEIAKRAVEAVKRKEETIRSAALKFQVSPTSIANRMASREEMAGRPGSPMVLTAEEEATIEDLLVCAGRHCLGITRPELVENVR*LCNGGRNLPWDPLKGPGKAWFAAFFKRHPRLALDSSRIYEANRMSTDYRSRLKTFYDGWQELFVEVQPAPTHIWNNDETGLNPKG-----------------------------------------------QRVQAAWVCNRAPPD-SWYAATDSSFIQGSGYLSFMKKFKEFIDNSGLNDGEPHVLFLYGHASHVTIDVLK 808
            ++ VDEE  ++A  A+     ++R AA  F V  TSI +R   +  M  + G   +L+ EEE ++ED+L+ A R+ L + R  L + VR LCN GR +PWDP KGPGK W   F +RHPR+A  S+RIYEANR++ D   R+  FY+ W  L  EV+P   H+ N DETG  P+G                                               QR+Q  W   R  P+ + Y  TDSSF+QG  +++++K F + + + GL DG+PH+L   GHASHV+++V++
Sbjct:    3 RRKVDEEKVRKAFAAIDNGM-SVRKAAEVFGVGRTSIEDRRRGKVAMNAKVGPETILSREEEDSLEDILLVAARNFLAVDRVHLRDAVRRLCNDGRRIPWDPEKGPGKDWLGGFLRRHPRVAERSTRIYEANRITEDEEPRMVQFYERWAALHDEVKPKANHVHNTDETGTTPQGTKTTKAFAESGQKVVGSMRSNSRENITVVATISADGHTWAPTITFKRQRLQVDWFVERNGPEGARYTCTDSSFMQGDVFIAYLKDFHKQLGDRGLLDGKPHILLHDGHASHVSVEVIR 294          
BLAST of mRNA_H-paniculata_contig20522.5320.1 vs. uniprot
Match: B2KWI5_ECTSI (Transposase n=1 Tax=Ectocarpus siliculosus TaxID=2880 RepID=B2KWI5_ECTSI)

HSP 1 Score: 200 bits (508), Expect = 5.460e-53
Identity = 117/291 (40.21%), Postives = 166/291 (57.04%), Query Frame = 2
Query:   83 VDEEIAKRAVEAVKRKEETIRSAALKFQVSPTSIANRMASREEMAGRPGSPMVLTAEEEATIEDLLVCAGRHCLGITRPELVENVR*LCNGGRNLPWDPLKGPGKAWFAAFFKRHPRLALDSSRIYEANRMSTDYRSRLKTFYDGWQELFVEVQPAPT-HIWNNDETG-------------------------------------------LNP----KGQRVQAAWVCNR-APPDSWYAATDSSFIQGSGYLSFMKKFKEFIDNSGLNDGEPHVLFLYGHASHVTIDVLK 808
            VD E A++A+EAV+    ++R+AA  + V+  S++ R++    +  + G   VLT EEE  +ED L+ A RH +GI R  L E+VR LCN GR++PWD   GPG++W   FFKRHP L+  S+RIYEANR+ +D  +RL+TFY  + E FV+ +  P  H+WN DETG                                           L P    KGQR+QA WV  R  PP++  A TDSSF+QG+ ++++++ F   + + GL +G PHVL L GHASHVT +V+K
Sbjct:    6 VDPEQAQKAIEAVRSGAMSLRAAAQAYGVNKRSLSRRLSGDVSIDAKVGPRTVLTVEEENFVEDALLYAARHFIGIDRTALQEHVRQLCNDGRDIPWDAAVGPGRSWLDGFFKRHPALSERSARIYEANRIMSDDETRLQTFYKDFGE-FVDKEKIPADHLWNTDETGSTSQGTKTMKAIAESGQKVVGAMRSNSRETVTVVVTISAAGATLAPWIIYKGQRLQADWVKGRNGPPNARLAVTDSSFMQGTVFVNYIRDFHRQLLDRGLINGTPHVLVLDGHASHVTYEVIK 295          
BLAST of mRNA_H-paniculata_contig20522.5320.1 vs. uniprot
Match: A0A6H5JFM5_9PHAE (Uncharacterized protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5JFM5_9PHAE)

HSP 1 Score: 193 bits (490), Expect = 5.280e-52
Identity = 109/293 (37.20%), Postives = 158/293 (53.92%), Query Frame = 2
Query:   74 KKSVDEEIAKRAVEAVKRKEETIRSAALKFQVSPTSIANRMASREEMAGRPGSPMVLTAEEEATIEDLLVCAGRHCLGITRPELVENVR*LCNGGRNLPWDPLKGPGKAWFAAFFKRHPRLALDSSRIYEANRMSTDYRSRLKTFYDGWQELFVEVQPAPTHIWNNDETGLNP-----------------------------------------------KGQRVQA-AWVCNRAPPDSWYAATDSSFIQGSGYLSFMKKFKEFIDNSGLNDGEPHVLFLYGHASHVTIDVLK 808
            ++ VDEE  ++A  A+     ++R AA  F V  TSI +R   +  M  + G+  +L+ EEE ++ED+L+ A R+ L + R  L + VR LCN GR +PWDP KGPGK W A F +RHPR+A  S+RIYEANR++ D   R+  FY+ W  L  E +P   H+ N DETG  P                                               KGQR+QA  +V    P  + +  TDSSF+QG  +++++K F + + + GL DG+PH+L L GHASHV+++V+K
Sbjct:    3 RRKVDEEQVRKACAAID-DGMSVRKAAGVFGVGRTSIEDRRRGKVAMNAKVGAETILSKEEEDSLEDILLFAARNFLAVGRVHLRDAVRRLCNDGRRIPWDPEKGPGKDWLAGFRRRHPRVAERSTRIYEANRITEDEEPRMVQFYERWAALLDEFKPEANHVHNTDETGTTPQGTKTTKAFAESGQKVVGSMRANSRENTTVVATISADGHTWAPTIIFKGQRLQADCFVERNGPEGARHTCTDSSFMQGDVFMNYLKDFHKQLGDRGLLDGKPHILLLDGHASHVSVEVIK 294          
BLAST of mRNA_H-paniculata_contig20522.5320.1 vs. uniprot
Match: A0A6H5JYX7_9PHAE (Uncharacterized protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5JYX7_9PHAE)

HSP 1 Score: 191 bits (484), Expect = 5.040e-51
Identity = 108/297 (36.36%), Postives = 157/297 (52.86%), Query Frame = 2
Query:   62 LTFQKKSVDEEIAKRAVEAVKRKEETIRSAALKFQVSPTSIANRMASREEMAGRPGSPMVLTAEEEATIEDLLVCAGRHCLGITRPELVENVR*LCNGGRNLPWDPLKGPGKAWFAAFFKRHPRLALDSSRIYEANRMSTDYRSRLKTFYDGWQELFVEVQPAPTHIWNNDETG-------------------------------------------LNP----KGQRVQAAWVCN-RAPPDSWYAATDSSFIQGSGYLSFMKKFKEFIDNSGLNDGEPHVLFLYGHASHVTIDVLK 808
            L+  +  V  E A +A EAV+    +  +AA  + +S TS++ R++    +  R G   V+TA EE  +ED+L+ AGR+ + +T  +L E VR LCN GR +PW P KGPG++W   F  RH R++L  +RIYE+NR+++    RL  FYD W +   E QPA  H+WN DE+G                                           L P    KGQR    WV +   PP ++Y  T+SSF+ G  ++ ++K F + + +  L DG+PHVL L GHASHVT+DV+K
Sbjct:   13 LSMGRNRVCAEAATKACEAVRSGSMSGNAAAAAYGISKTSLSRRLSGECAIDARVGPGTVMTAAEEDALEDVLLYAGRNFIPLTTADLTERVRQLCNDGRPIPWTPDKGPGRSWLEGFLGRHERISLRLARIYESNRVTSAEDERLHKFYDFWGQFIDEHQPAADHVWNTDESGGTVQGTQGQRVMAERGQPVVAQMRSTSRENCTIVTTINAAGAVLAPTIIFKGQRFNGDWVADLNGPPGAYYDCTESSFMCGEVFIKYIKNFHKQLGDRNLLDGKPHVLVLDGHASHVTLDVIK 309          
BLAST of mRNA_H-paniculata_contig20522.5320.1 vs. uniprot
Match: A0A6H5JV04_9PHAE (Uncharacterized protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5JV04_9PHAE)

HSP 1 Score: 190 bits (482), Expect = 1.570e-49
Identity = 106/293 (36.18%), Postives = 156/293 (53.24%), Query Frame = 2
Query:   74 KKSVDEEIAKRAVEAVKRKEETIRSAALKFQVSPTSIANRMASREEMAGRPGSPMVLTAEEEATIEDLLVCAGRHCLGITRPELVENVR*LCNGGRNLPWDPLKGPGKAWFAAFFKRHPRLALDSSRIYEANRMSTDYRSRLKTFYDGWQELFVEVQPAPTHIWNNDETGLNP-----------------------------------------------KGQRVQAAWVCNR-APPDSWYAATDSSFIQGSGYLSFMKKFKEFIDNSGLNDGEPHVLFLYGHASHVTIDVLK 808
            ++ VD + A++A EAV R   ++R AA  + +   S+  R+     M  + G   V++ EEE +IED L+ AGR+CL ++R  L+E VR LC   R  PWDP KGPGK W A F +RHPR+   ++RIYEANR++ +   R+  FY  W  L  +++P   H+ N DETG  P                                               KGQR+Q  W   +  PPD+ Y  TDSSF+QG+ ++ ++K F + +   GL DG+PH+L L GHASHV+++V++
Sbjct:    3 RRRVDAQQAQKACEAV-RGGMSVRKAAKVYDIDRLSLKRRLDGEVAMDAKVGPGTVMSEEEENSIEDCLLYAGRNCLAVSRLHLLETVRLLCLD-RKTPWDPEKGPGKDWLAGFLERHPRVRERTTRIYEANRVTDESEPRIVEFYRKWAALLEDLKPEADHVHNTDETGTTPQGNKTMKAYCQAGQKVVESVRANSRENTTLVTTISADGSTWAPTIIFKGQRLQPDWFAEKNGPPDARYTCTDSSFMQGNVFIKYLKDFHQQLCKRGLIDGKPHILLLDGHASHVSVEVIQ 293          
BLAST of mRNA_H-paniculata_contig20522.5320.1 vs. uniprot
Match: A0A6H5JJ12_9PHAE (Integrase catalytic domain-containing protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5JJ12_9PHAE)

HSP 1 Score: 189 bits (481), Expect = 1.820e-48
Identity = 106/290 (36.55%), Postives = 154/290 (53.10%), Query Frame = 2
Query:   83 VDEEIAKRAVEAVKRKEETIRSAALKFQVSPTSIANRMASREEMAGRPGSPMVLTAEEEATIEDLLVCAGRHCLGITRPELVENVR*LCNGGRNLPWDPLKGPGKAWFAAFFKRHPRLALDSSRIYEANRMSTDYRSRLKTFYDGWQELFVEVQPAPTHIWNNDETGLNP-----------------------------------------------KGQRVQAAWVCNR-APPDSWYAATDSSFIQGSGYLSFMKKFKEFIDNSGLNDGEPHVLFLYGHASHVTIDVLK 808
            VD + A++A EAV R   ++R AA  + +   S+  R+     M  + G   V++ EEE +IED L+ AGR+CL ++R  L+E VR LC   R  PWDP KGPGK W A F +RHPR+   ++RIYEANR++ +   R+  FY  W  L  +++P   H+ N DETG  P                                               KGQR+Q  W   +  PPD+ Y  TDSSF+QG+ ++ ++K F + +   GL DG+PH+L L GHASHV+++V++
Sbjct:  247 VDAQQAQKACEAV-RGGMSVRKAAKVYDIDRLSLKRRLDGEVAMDAKVGPGTVMSEEEENSIEDCLLYAGRNCLAVSRLHLLETVRLLCLD-RKTPWDPEKGPGKDWLAGFLERHPRVRERTTRIYEANRVTDESEPRIVEFYRKWAALLEDLKPEADHVHNTDETGTTPQGNKTMKAYCQAGQKVVESVRANSRENTTLVTTISADGSTWAPTIIFKGQRLQPDWFAEKNGPPDARYTCTDSSFMQGNVFIKYLKDFHQQLCKRGLIDGKPHILLLDGHASHVSVEVIQ 534          
BLAST of mRNA_H-paniculata_contig20522.5320.1 vs. uniprot
Match: A0A6H5JR11_9PHAE (Uncharacterized protein (Fragment) n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5JR11_9PHAE)

HSP 1 Score: 172 bits (435), Expect = 3.500e-46
Identity = 89/228 (39.04%), Postives = 123/228 (53.95%), Query Frame = 2
Query:  269 EDLLVCAGRHCLGITRPELVENVR*LCNGGRNLPWDPLKGPGKAWFAAFFKRHPRLALDSSRIYEANRMSTDYRSRLKTFYDGWQELFVEVQPAPTHIWNNDETG-------------------------------------------LNP----KGQRVQAAWVCNR-APPDSWYAATDSSFIQGSGYLSFMKKFKEFIDNSGLNDGEPHVLFLYGHASHVTIDVLK 808
            +D+L+ AGR+ + +TR +L E VR LCN GR +PWDP KGPGK+W   F +RH R++L  +RIYEANRM++    RL  FY  WQE   E +PAP H+WN DE+G                                           L+P    KG R    W+ +R  PP + Y  T+SSF+ G  ++ ++K F E +    L DG+PHVL L GHASHV+ +V++
Sbjct:    4 KDVLLYAGRNYIPLTRNDLKERVRQLCNDGRPIPWDPDKGPGKSWLQGFLRRHDRISLRLARIYEANRMTSPENDRLHNFYKFWQEFVNEHKPAPDHVWNTDESGGTIQGTQTQRVFAEQGQPVVPQMRANSRENCTIVTTINAAGAVLDPTVIFKGVRFNQDWIADRNGPPGATYTCTESSFMCGDVFIKYIKNFHEQLRRRNLLDGKPHVLVLDGHASHVSFEVIQ 231          
BLAST of mRNA_H-paniculata_contig20522.5320.1 vs. uniprot
Match: A0A6H5JGP6_9PHAE (DDE-1 domain-containing protein (Fragment) n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5JGP6_9PHAE)

HSP 1 Score: 177 bits (448), Expect = 3.150e-45
Identity = 99/239 (41.42%), Postives = 133/239 (55.65%), Query Frame = 2
Query:  239 VLTAEEEATIEDLLVCAGRHCLGITRPELVENVR*LCNGGRNLPWDPLKGPGKAWFAAFFKRHPRLALDSSRIYEANRMSTDYRSRLKTFYDGWQELFVEVQPAPT-HIWNNDETGLNP-----------------------------------------------KGQRVQAAWVCNR-APPDSWYAATDSSFIQGSGYLSFMKKFKEFIDNSGLNDGEPHVLFLYGHASHVTIDVLK 808
            VLT E E  +ED L+ A RH +GI R  L E+VR LCN GR++PWD   GPG++W   FFKRHP L+  S+RIYEANR+ +D  +RL+TFY  + E FV+ +  P  H+WN DETG  P                                               KGQR+QA W   R APP++  A T+SSF+QG  ++++++ F   + + GL +G PHVL L GHASHVT +V+K
Sbjct:   17 VLTVEGENFVEDALLYAARHFIGIDRAALQEHVRQLCNDGRDIPWDAAVGPGRSWLDGFFKRHPALSECSARIYEANRIMSDDETRLQTFYKDFGE-FVDKEKIPADHLWNTDETGSTPQGTKTMKVIAESGQKVVGAIHSKSRENVTVVVTISTVGATLAPWIIYKGQRLQADWAKGRNAPPNARLAVTNSSFMQGIVFVNYIRDFHRQLLDRGLINGTPHVLVLDGHASHVTYEVVK 254          
BLAST of mRNA_H-paniculata_contig20522.5320.1 vs. uniprot
Match: A0A6H5L0Y6_9PHAE (DDE-1 domain-containing protein (Fragment) n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5L0Y6_9PHAE)

HSP 1 Score: 174 bits (440), Expect = 4.010e-45
Identity = 88/214 (41.12%), Postives = 121/214 (56.54%), Query Frame = 2
Query:  269 EDLLVCAGRHCLGITRPELVENVR*LCNGGRNLPWDPLKGPGKAWFAAFFKRHPRLALDSSRIYEANRMSTDYRSRLKTFYDGWQELFVEVQPAPTHIWNNDETG-----------------------------LNP----KGQRVQAAWVCNR-APPDSWYAATDSSFIQGSGYLSFMKKFKEFIDNSGLNDGEPHVLFLYGHASHVTIDVLK 808
            +D+L+ AGR+ + +TR +L E VR LCN GR +PWDP KGPGK+W   F +RH R++L  +RIYEANRM++    RL   Y  WQE   E +PAP H+WN DE+G                             L P    KG R    W+ +R  PP + Y  T+SSF+ G  ++ ++K F E +    L DG+PHVL L GHASHV+ +V++
Sbjct:    4 KDVLLYAGRNYIPLTRNDLEERVRQLCNDGRPIPWDPDKGPGKSWLQGFLRRHDRISLRLARIYEANRMTSPEDDRLHNIYKFWQEFVNEHKPAPDHVWNTDESGAASGAPDARQLARKLHDRHHYCINAAGAVLGPTVIFKGVRFNQDWIADRNGPPGATYTCTESSFMCGDVFIKYIKNFHEQLRRRNLLDGKPHVLVLDGHASHVSFEVIQ 217          
The following BLAST results are available for this feature:
BLAST of mRNA_H-paniculata_contig20522.5320.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 vs UniRef90)
Total hits: 25
Match NameE-valueIdentityDescription
A0A6H5L5E2_9PHAE5.870e-5640.55Uncharacterized protein n=1 Tax=Ectocarpus sp. CCA... [more]
A0A6H5KJ62_9PHAE6.770e-5436.52Uncharacterized protein n=1 Tax=Ectocarpus sp. CCA... [more]
B2KWI5_ECTSI5.460e-5340.21Transposase n=1 Tax=Ectocarpus siliculosus TaxID=2... [more]
A0A6H5JFM5_9PHAE5.280e-5237.20Uncharacterized protein n=1 Tax=Ectocarpus sp. CCA... [more]
A0A6H5JYX7_9PHAE5.040e-5136.36Uncharacterized protein n=1 Tax=Ectocarpus sp. CCA... [more]
A0A6H5JV04_9PHAE1.570e-4936.18Uncharacterized protein n=1 Tax=Ectocarpus sp. CCA... [more]
A0A6H5JJ12_9PHAE1.820e-4836.55Integrase catalytic domain-containing protein n=1 ... [more]
A0A6H5JR11_9PHAE3.500e-4639.04Uncharacterized protein (Fragment) n=1 Tax=Ectocar... [more]
A0A6H5JGP6_9PHAE3.150e-4541.42DDE-1 domain-containing protein (Fragment) n=1 Tax... [more]
A0A6H5L0Y6_9PHAE4.010e-4541.12DDE-1 domain-containing protein (Fragment) n=1 Tax... [more]

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Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
H-paniculata_contig20522contigH-paniculata_contig20522:2..1741 +
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 vs UniRef902022-09-19
OGS1.0 of Halopteris paniculata Hal_grac_a_UBK monoicous2021-02-24
Properties
Property NameValue
Hectar predicted targeting categoryother localisation
Exons2
Model size1529
Cds size483
Stop1
Start1
Relationships

The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_H-paniculata_contig20522.5320.1prot_H-paniculata_contig20522.5320.1Halopteris paniculata Hal_grac_a_UBK monoicouspolypeptideH-paniculata_contig20522 474..1167 +


The following UTR feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1622929534.6929505-UTR-H-paniculata_contig20522:1..4731622929534.6929505-UTR-H-paniculata_contig20522:1..473Halopteris paniculata Hal_grac_a_UBK monoicousUTRH-paniculata_contig20522 2..473 +
1691480902.7016788-UTR-H-paniculata_contig20522:1..4731691480902.7016788-UTR-H-paniculata_contig20522:1..473Halopteris paniculata Hal_grac_a_UBK monoicousUTRH-paniculata_contig20522 2..473 +
1622929534.737608-UTR-H-paniculata_contig20522:1167..17411622929534.737608-UTR-H-paniculata_contig20522:1167..1741Halopteris paniculata Hal_grac_a_UBK monoicousUTRH-paniculata_contig20522 1168..1741 +
1691480902.7393544-UTR-H-paniculata_contig20522:1167..17411691480902.7393544-UTR-H-paniculata_contig20522:1167..1741Halopteris paniculata Hal_grac_a_UBK monoicousUTRH-paniculata_contig20522 1168..1741 +


The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1622929534.7089505-CDS-H-paniculata_contig20522:473..5821622929534.7089505-CDS-H-paniculata_contig20522:473..582Halopteris paniculata Hal_grac_a_UBK monoicousCDSH-paniculata_contig20522 474..582 +
1691480902.7172995-CDS-H-paniculata_contig20522:473..5821691480902.7172995-CDS-H-paniculata_contig20522:473..582Halopteris paniculata Hal_grac_a_UBK monoicousCDSH-paniculata_contig20522 474..582 +
1622929534.7244518-CDS-H-paniculata_contig20522:793..11671622929534.7244518-CDS-H-paniculata_contig20522:793..1167Halopteris paniculata Hal_grac_a_UBK monoicousCDSH-paniculata_contig20522 794..1167 +
1691480902.729558-CDS-H-paniculata_contig20522:793..11671691480902.729558-CDS-H-paniculata_contig20522:793..1167Halopteris paniculata Hal_grac_a_UBK monoicousCDSH-paniculata_contig20522 794..1167 +


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_H-paniculata_contig20522.5320.1

>prot_H-paniculata_contig20522.5320.1 ID=prot_H-paniculata_contig20522.5320.1|Name=mRNA_H-paniculata_contig20522.5320.1|organism=Halopteris paniculata Hal_grac_a_UBK monoicous|type=polypeptide|length=161bp
MSTDYRSRLKTFYDGWQELFVEVQPAPTHIWNNDETGLNPKGQRVQAAWV
CNRAPPDSWYAATDSSFIQGSGYLSFMKKFKEFIDNSGLNDGEPHVLFLY
GHASHVTIDVLKQPRPPRRVQHPCERPLHHRPAREHGVLWCVPPGESGRC
ARQSSGARRA*
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mRNA from alignment at H-paniculata_contig20522:2..1741+

Legend: UTRpolypeptideCDS
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_H-paniculata_contig20522.5320.1 ID=mRNA_H-paniculata_contig20522.5320.1|Name=mRNA_H-paniculata_contig20522.5320.1|organism=Halopteris paniculata Hal_grac_a_UBK monoicous|type=mRNA|length=1740bp|location=Sequence derived from alignment at H-paniculata_contig20522:2..1741+ (Halopteris paniculata Hal_grac_a_UBK monoicous)
AAGGAAATGCAGACACTCAGAAATCTTCTGAAGAGTGGAAGTAGCGGAAA GGGTTTTTTGCCTGACCTTCCAAAAAAAAAGTGTGGACGAGGAAATAGCG AAACGGGCCGTTGAGGCGGTCAAAAGGAAAGAAGAGACCATCAGGAGTGC CGCTCTCAAATTTCAAGTCAGTCCGACTTCAATAGCGAACAGGATGGCCA GCAGAGAAGAGATGGCCGGCAGACCTGGTTCGCCCATGGTTCTGACCGCG GAGGAGGAGGCCACTATCGAAGATCTGCTGGTTTGCGCTGGTAGGCACTG TCTCGGCATCACTAGGCCCGAGCTTGTTGAAAACGTTCGCTAGCTGTGCA ACGGCGGCCGTAACTTGCCTTGGGACCCCCTTAAGGGGCCTGGTAAGGCC TGGTTCGCGGCGTTCTTCAAGCGACACCCAAGGCTAGCGCTAGACAGCTC CCGTATTTATGAAGCGAACCGCATGTCTACGGACTATCGCTCCCGCCTGA AGACATTCTACGACGGATGGCAGGAGCTCTTTGTCGAAGTGCAACCTGCA CCAACACACATCTGGAACAATGATGAGACAGGTGAGGTGTGTACGCACAA CGCGACATGGCTGTTTCGTTTGGGCGCGAGAGTGTCGTCCGTTTGTCGTC GCTGCTGCCTTTGCTGTGAAGAACGGCCGGATGCTGTGCGCGCCGCTACA GCTGCTGTTTGCAGTTTTGATTGCTGTTTCGAGCTGTGTGTACTGCTGTT GACGCACGTTCCTGTGCTGCTGTTTACGCTTTGTGTTGTCAGGCCTTAAC CCCAAGGGACAGCGGGTGCAAGCGGCCTGGGTCTGTAACCGCGCCCCCCC CGATTCGTGGTACGCCGCGACTGACTCCTCGTTCATCCAAGGGTCGGGCT ACCTCAGCTTCATGAAGAAATTCAAGGAGTTCATCGACAACAGCGGTCTG AATGACGGCGAGCCCCACGTCCTTTTCCTCTACGGGCACGCTTCGCATGT TACCATCGACGTTTTGAAACAGCCTAGGCCGCCGCGCCGAGTTCAACATC CTTGCGAACGGCCACTTCATCACCGGCCTGCGCGTGAACACGGTGTTCTT TGGTGCGTACCTCCAGGAGAAAGCGGAAGGTGCGCCCGGCAATCCAGCGG CGCTCGCAGGGCGTGACAAAGGTCAGTCTCCTCACGACCGACAAGATTTT GGCGGAGTACGAGGAAGAGGAGAAAAGAAAGAAAGAGGAAGAGGAAGCGA AGGCGTCGCTGATGGCGGCGAGAGAGGCCAAACGTGTCGAGAAGGAAGCG GCGGAGGCGGCCAGACGGCAGCGACAGCAGAGCAGCCGCCGAGGGAGTGG GCGAAGCGGCCAGACGCGCGGCCACGGGGGCGGGGCGCAGCGGCCTGGGA CGCGGTCGCCGCAGAGGGGGTGGACACGGCGGGGGTGGTGTTAGTTCGGC GATGGGAACGGGCAGGTCAGGCTGAATGAACTGGATCCTCTTGGGCTGGG ATGGCTGCTGCCCAGGAGGGCGGGAGTTTAGGGCTGACTGTAATGTTCTT TAAGTGCGGTCTTGTCACACGAAGGACCGATTTATTAGGGGAGGAATAAC TCGTGACAGTATCCAGGTTTCATTACCTTTCCGCCTCCCGCGAGCGGGGC GGGGATGGGAGGGGCGGGAAGCGCTTAGCAAAACAGGAGATTTGGGGCCG AAATCTGGGGGTACGTTACATCTCGATTCAAGAGCAAAGA
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Coding sequence (CDS) from alignment at H-paniculata_contig20522:2..1741+

>mRNA_H-paniculata_contig20522.5320.1 ID=mRNA_H-paniculata_contig20522.5320.1|Name=mRNA_H-paniculata_contig20522.5320.1|organism=Halopteris paniculata Hal_grac_a_UBK monoicous|type=CDS|length=966bp|location=Sequence derived from alignment at H-paniculata_contig20522:2..1741+ (Halopteris paniculata Hal_grac_a_UBK monoicous)
ATGTCTACGGACTATCGCTCCCGCCTGAAGACATTCTACGACGGATGGCA
GGAGCTCTTTGTCGAAGTGCAACCTGCACCAACACACATCTGGAACAATG
ATGAGACAGATGTCTACGGACTATCGCTCCCGCCTGAAGACATTCTACGA
CGGATGGCAGGAGCTCTTTGTCGAAGTGCAACCTGCACCAACACACATCT
GGAACAATGATGAGACAGGCCTTAACCCCAAGGGACAGCGGGTGCAAGCG
GCCTGGGTCTGTAACCGCGCCCCCCCCGATTCGTGGTACGCCGCGACTGA
CTCCTCGTTCATCCAAGGGTCGGGCTACCTCAGCTTCATGAAGAAATTCA
AGGAGTTCATCGACAACAGCGGTCTGAATGACGGCGAGCCCCACGTCCTT
TTCCTCTACGGGCACGCTTCGCATGTTACCATCGACGTTTTGAAACAGCC
TAGGCCGCCGCGCCGAGTTCAACATCCTTGCGAACGGCCACTTCATCACC
GGCCTGCGCGTGAACACGGTGTTCTTTGGTGCGTACCTCCAGGAGAAAGC
GGAAGGTGCGCCCGGCAATCCAGCGGCGCTCGCAGGGCGTGAGCCTTAAC
CCCAAGGGACAGCGGGTGCAAGCGGCCTGGGTCTGTAACCGCGCCCCCCC
CGATTCGTGGTACGCCGCGACTGACTCCTCGTTCATCCAAGGGTCGGGCT
ACCTCAGCTTCATGAAGAAATTCAAGGAGTTCATCGACAACAGCGGTCTG
AATGACGGCGAGCCCCACGTCCTTTTCCTCTACGGGCACGCTTCGCATGT
TACCATCGACGTTTTGAAACAGCCTAGGCCGCCGCGCCGAGTTCAACATC
CTTGCGAACGGCCACTTCATCACCGGCCTGCGCGTGAACACGGTGTTCTT
TGGTGCGTACCTCCAGGAGAAAGCGGAAGGTGCGCCCGGCAATCCAGCGG
CGCTCGCAGGGCGTGA
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