mRNA_H-paniculata_contig20522.5320.1 (mRNA) Halopteris paniculata Hal_grac_a_UBK monoicous
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Overview
Homology
BLAST of mRNA_H-paniculata_contig20522.5320.1 vs. uniprot
Match: A0A6H5L5E2_9PHAE (Uncharacterized protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5L5E2_9PHAE) HSP 1 Score: 202 bits (514), Expect = 5.870e-56 Identity = 118/291 (40.55%), Postives = 166/291 (57.04%), Query Frame = 2
Query: 83 VDEEIAKRAVEAVKRKEETIRSAALKFQVSPTSIANRMASREEMAGRPGSPMVLTAEEEATIEDLLVCAGRHCLGITRPELVENVR*LCNGGRNLPWDPLKGPGKAWFAAFFKRHPRLALDSSRIYEANRMSTDYRSRLKTFYDGWQELFVEVQPAPT-HIWNNDETG-------------------------------------------LNP----KGQRVQAAWVCNR-APPDSWYAATDSSFIQGSGYLSFMKKFKEFIDNSGLNDGEPHVLFLYGHASHVTIDVLK 808
VD E A++A+EAV+ ++R+AA + V+ S++ R+ E M + G VLT EEE+ +ED L+ A RH +GI R L E+VR LCN GR++PWD GPG++W FFKRHP L+ S+RIYEANR+ +D +RL+TFY + E FV+ + P H+WN DETG L P KGQR+QA WV R PP++ A DSSF+QG+ ++++++ F + + GL +G PHVL L GHASHVT +V+K
Sbjct: 6 VDPEQAQKAIEAVRSGAMSLRAAAQAYGVNKRSLSRRLTGDESMDAKVGPRTVLTVEEESFVEDALLYAARHFIGIDRTALQEHVRQLCNDGRDIPWDAAVGPGRSWLDGFFKRHPALSERSARIYEANRIMSDDETRLQTFYKDFGE-FVDKEKIPADHLWNTDETGSTSQGTKTMKVITESGQKVGGAMRSNSRENVTVVVTISAAGATLAPWIIYKGQRLQADWVKGRNGPPNARLAVIDSSFMQGTVFVNYIRDFHRQLLDRGLINGTPHVLVLDGHASHVTYEVVK 295
BLAST of mRNA_H-paniculata_contig20522.5320.1 vs. uniprot
Match: A0A6H5KJ62_9PHAE (Uncharacterized protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5KJ62_9PHAE) HSP 1 Score: 194 bits (493), Expect = 6.770e-54 Identity = 107/293 (36.52%), Postives = 156/293 (53.24%), Query Frame = 2
Query: 74 KKSVDEEIAKRAVEAVKRKEETIRSAALKFQVSPTSIANRMASREEMAGRPGSPMVLTAEEEATIEDLLVCAGRHCLGITRPELVENVR*LCNGGRNLPWDPLKGPGKAWFAAFFKRHPRLALDSSRIYEANRMSTDYRSRLKTFYDGWQELFVEVQPAPTHIWNNDETGLNPKG-----------------------------------------------QRVQAAWVCNRAPPD-SWYAATDSSFIQGSGYLSFMKKFKEFIDNSGLNDGEPHVLFLYGHASHVTIDVLK 808
++ VDEE ++A A+ ++R AA F V TSI +R + M + G +L+ EEE ++ED+L+ A R+ L + R L + VR LCN GR +PWDP KGPGK W F +RHPR+A S+RIYEANR++ D R+ FY+ W L EV+P H+ N DETG P+G QR+Q W R P+ + Y TDSSF+QG +++++K F + + + GL DG+PH+L GHASHV+++V++
Sbjct: 3 RRKVDEEKVRKAFAAIDNGM-SVRKAAEVFGVGRTSIEDRRRGKVAMNAKVGPETILSREEEDSLEDILLVAARNFLAVDRVHLRDAVRRLCNDGRRIPWDPEKGPGKDWLGGFLRRHPRVAERSTRIYEANRITEDEEPRMVQFYERWAALHDEVKPKANHVHNTDETGTTPQGTKTTKAFAESGQKVVGSMRSNSRENITVVATISADGHTWAPTITFKRQRLQVDWFVERNGPEGARYTCTDSSFMQGDVFIAYLKDFHKQLGDRGLLDGKPHILLHDGHASHVSVEVIR 294
BLAST of mRNA_H-paniculata_contig20522.5320.1 vs. uniprot
Match: B2KWI5_ECTSI (Transposase n=1 Tax=Ectocarpus siliculosus TaxID=2880 RepID=B2KWI5_ECTSI) HSP 1 Score: 200 bits (508), Expect = 5.460e-53 Identity = 117/291 (40.21%), Postives = 166/291 (57.04%), Query Frame = 2
Query: 83 VDEEIAKRAVEAVKRKEETIRSAALKFQVSPTSIANRMASREEMAGRPGSPMVLTAEEEATIEDLLVCAGRHCLGITRPELVENVR*LCNGGRNLPWDPLKGPGKAWFAAFFKRHPRLALDSSRIYEANRMSTDYRSRLKTFYDGWQELFVEVQPAPT-HIWNNDETG-------------------------------------------LNP----KGQRVQAAWVCNR-APPDSWYAATDSSFIQGSGYLSFMKKFKEFIDNSGLNDGEPHVLFLYGHASHVTIDVLK 808
VD E A++A+EAV+ ++R+AA + V+ S++ R++ + + G VLT EEE +ED L+ A RH +GI R L E+VR LCN GR++PWD GPG++W FFKRHP L+ S+RIYEANR+ +D +RL+TFY + E FV+ + P H+WN DETG L P KGQR+QA WV R PP++ A TDSSF+QG+ ++++++ F + + GL +G PHVL L GHASHVT +V+K
Sbjct: 6 VDPEQAQKAIEAVRSGAMSLRAAAQAYGVNKRSLSRRLSGDVSIDAKVGPRTVLTVEEENFVEDALLYAARHFIGIDRTALQEHVRQLCNDGRDIPWDAAVGPGRSWLDGFFKRHPALSERSARIYEANRIMSDDETRLQTFYKDFGE-FVDKEKIPADHLWNTDETGSTSQGTKTMKAIAESGQKVVGAMRSNSRETVTVVVTISAAGATLAPWIIYKGQRLQADWVKGRNGPPNARLAVTDSSFMQGTVFVNYIRDFHRQLLDRGLINGTPHVLVLDGHASHVTYEVIK 295
BLAST of mRNA_H-paniculata_contig20522.5320.1 vs. uniprot
Match: A0A6H5JFM5_9PHAE (Uncharacterized protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5JFM5_9PHAE) HSP 1 Score: 193 bits (490), Expect = 5.280e-52 Identity = 109/293 (37.20%), Postives = 158/293 (53.92%), Query Frame = 2
Query: 74 KKSVDEEIAKRAVEAVKRKEETIRSAALKFQVSPTSIANRMASREEMAGRPGSPMVLTAEEEATIEDLLVCAGRHCLGITRPELVENVR*LCNGGRNLPWDPLKGPGKAWFAAFFKRHPRLALDSSRIYEANRMSTDYRSRLKTFYDGWQELFVEVQPAPTHIWNNDETGLNP-----------------------------------------------KGQRVQA-AWVCNRAPPDSWYAATDSSFIQGSGYLSFMKKFKEFIDNSGLNDGEPHVLFLYGHASHVTIDVLK 808
++ VDEE ++A A+ ++R AA F V TSI +R + M + G+ +L+ EEE ++ED+L+ A R+ L + R L + VR LCN GR +PWDP KGPGK W A F +RHPR+A S+RIYEANR++ D R+ FY+ W L E +P H+ N DETG P KGQR+QA +V P + + TDSSF+QG +++++K F + + + GL DG+PH+L L GHASHV+++V+K
Sbjct: 3 RRKVDEEQVRKACAAID-DGMSVRKAAGVFGVGRTSIEDRRRGKVAMNAKVGAETILSKEEEDSLEDILLFAARNFLAVGRVHLRDAVRRLCNDGRRIPWDPEKGPGKDWLAGFRRRHPRVAERSTRIYEANRITEDEEPRMVQFYERWAALLDEFKPEANHVHNTDETGTTPQGTKTTKAFAESGQKVVGSMRANSRENTTVVATISADGHTWAPTIIFKGQRLQADCFVERNGPEGARHTCTDSSFMQGDVFMNYLKDFHKQLGDRGLLDGKPHILLLDGHASHVSVEVIK 294
BLAST of mRNA_H-paniculata_contig20522.5320.1 vs. uniprot
Match: A0A6H5JYX7_9PHAE (Uncharacterized protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5JYX7_9PHAE) HSP 1 Score: 191 bits (484), Expect = 5.040e-51 Identity = 108/297 (36.36%), Postives = 157/297 (52.86%), Query Frame = 2
Query: 62 LTFQKKSVDEEIAKRAVEAVKRKEETIRSAALKFQVSPTSIANRMASREEMAGRPGSPMVLTAEEEATIEDLLVCAGRHCLGITRPELVENVR*LCNGGRNLPWDPLKGPGKAWFAAFFKRHPRLALDSSRIYEANRMSTDYRSRLKTFYDGWQELFVEVQPAPTHIWNNDETG-------------------------------------------LNP----KGQRVQAAWVCN-RAPPDSWYAATDSSFIQGSGYLSFMKKFKEFIDNSGLNDGEPHVLFLYGHASHVTIDVLK 808
L+ + V E A +A EAV+ + +AA + +S TS++ R++ + R G V+TA EE +ED+L+ AGR+ + +T +L E VR LCN GR +PW P KGPG++W F RH R++L +RIYE+NR+++ RL FYD W + E QPA H+WN DE+G L P KGQR WV + PP ++Y T+SSF+ G ++ ++K F + + + L DG+PHVL L GHASHVT+DV+K
Sbjct: 13 LSMGRNRVCAEAATKACEAVRSGSMSGNAAAAAYGISKTSLSRRLSGECAIDARVGPGTVMTAAEEDALEDVLLYAGRNFIPLTTADLTERVRQLCNDGRPIPWTPDKGPGRSWLEGFLGRHERISLRLARIYESNRVTSAEDERLHKFYDFWGQFIDEHQPAADHVWNTDESGGTVQGTQGQRVMAERGQPVVAQMRSTSRENCTIVTTINAAGAVLAPTIIFKGQRFNGDWVADLNGPPGAYYDCTESSFMCGEVFIKYIKNFHKQLGDRNLLDGKPHVLVLDGHASHVTLDVIK 309
BLAST of mRNA_H-paniculata_contig20522.5320.1 vs. uniprot
Match: A0A6H5JV04_9PHAE (Uncharacterized protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5JV04_9PHAE) HSP 1 Score: 190 bits (482), Expect = 1.570e-49 Identity = 106/293 (36.18%), Postives = 156/293 (53.24%), Query Frame = 2
Query: 74 KKSVDEEIAKRAVEAVKRKEETIRSAALKFQVSPTSIANRMASREEMAGRPGSPMVLTAEEEATIEDLLVCAGRHCLGITRPELVENVR*LCNGGRNLPWDPLKGPGKAWFAAFFKRHPRLALDSSRIYEANRMSTDYRSRLKTFYDGWQELFVEVQPAPTHIWNNDETGLNP-----------------------------------------------KGQRVQAAWVCNR-APPDSWYAATDSSFIQGSGYLSFMKKFKEFIDNSGLNDGEPHVLFLYGHASHVTIDVLK 808
++ VD + A++A EAV R ++R AA + + S+ R+ M + G V++ EEE +IED L+ AGR+CL ++R L+E VR LC R PWDP KGPGK W A F +RHPR+ ++RIYEANR++ + R+ FY W L +++P H+ N DETG P KGQR+Q W + PPD+ Y TDSSF+QG+ ++ ++K F + + GL DG+PH+L L GHASHV+++V++
Sbjct: 3 RRRVDAQQAQKACEAV-RGGMSVRKAAKVYDIDRLSLKRRLDGEVAMDAKVGPGTVMSEEEENSIEDCLLYAGRNCLAVSRLHLLETVRLLCLD-RKTPWDPEKGPGKDWLAGFLERHPRVRERTTRIYEANRVTDESEPRIVEFYRKWAALLEDLKPEADHVHNTDETGTTPQGNKTMKAYCQAGQKVVESVRANSRENTTLVTTISADGSTWAPTIIFKGQRLQPDWFAEKNGPPDARYTCTDSSFMQGNVFIKYLKDFHQQLCKRGLIDGKPHILLLDGHASHVSVEVIQ 293
BLAST of mRNA_H-paniculata_contig20522.5320.1 vs. uniprot
Match: A0A6H5JJ12_9PHAE (Integrase catalytic domain-containing protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5JJ12_9PHAE) HSP 1 Score: 189 bits (481), Expect = 1.820e-48 Identity = 106/290 (36.55%), Postives = 154/290 (53.10%), Query Frame = 2
Query: 83 VDEEIAKRAVEAVKRKEETIRSAALKFQVSPTSIANRMASREEMAGRPGSPMVLTAEEEATIEDLLVCAGRHCLGITRPELVENVR*LCNGGRNLPWDPLKGPGKAWFAAFFKRHPRLALDSSRIYEANRMSTDYRSRLKTFYDGWQELFVEVQPAPTHIWNNDETGLNP-----------------------------------------------KGQRVQAAWVCNR-APPDSWYAATDSSFIQGSGYLSFMKKFKEFIDNSGLNDGEPHVLFLYGHASHVTIDVLK 808
VD + A++A EAV R ++R AA + + S+ R+ M + G V++ EEE +IED L+ AGR+CL ++R L+E VR LC R PWDP KGPGK W A F +RHPR+ ++RIYEANR++ + R+ FY W L +++P H+ N DETG P KGQR+Q W + PPD+ Y TDSSF+QG+ ++ ++K F + + GL DG+PH+L L GHASHV+++V++
Sbjct: 247 VDAQQAQKACEAV-RGGMSVRKAAKVYDIDRLSLKRRLDGEVAMDAKVGPGTVMSEEEENSIEDCLLYAGRNCLAVSRLHLLETVRLLCLD-RKTPWDPEKGPGKDWLAGFLERHPRVRERTTRIYEANRVTDESEPRIVEFYRKWAALLEDLKPEADHVHNTDETGTTPQGNKTMKAYCQAGQKVVESVRANSRENTTLVTTISADGSTWAPTIIFKGQRLQPDWFAEKNGPPDARYTCTDSSFMQGNVFIKYLKDFHQQLCKRGLIDGKPHILLLDGHASHVSVEVIQ 534
BLAST of mRNA_H-paniculata_contig20522.5320.1 vs. uniprot
Match: A0A6H5JR11_9PHAE (Uncharacterized protein (Fragment) n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5JR11_9PHAE) HSP 1 Score: 172 bits (435), Expect = 3.500e-46 Identity = 89/228 (39.04%), Postives = 123/228 (53.95%), Query Frame = 2
Query: 269 EDLLVCAGRHCLGITRPELVENVR*LCNGGRNLPWDPLKGPGKAWFAAFFKRHPRLALDSSRIYEANRMSTDYRSRLKTFYDGWQELFVEVQPAPTHIWNNDETG-------------------------------------------LNP----KGQRVQAAWVCNR-APPDSWYAATDSSFIQGSGYLSFMKKFKEFIDNSGLNDGEPHVLFLYGHASHVTIDVLK 808
+D+L+ AGR+ + +TR +L E VR LCN GR +PWDP KGPGK+W F +RH R++L +RIYEANRM++ RL FY WQE E +PAP H+WN DE+G L+P KG R W+ +R PP + Y T+SSF+ G ++ ++K F E + L DG+PHVL L GHASHV+ +V++
Sbjct: 4 KDVLLYAGRNYIPLTRNDLKERVRQLCNDGRPIPWDPDKGPGKSWLQGFLRRHDRISLRLARIYEANRMTSPENDRLHNFYKFWQEFVNEHKPAPDHVWNTDESGGTIQGTQTQRVFAEQGQPVVPQMRANSRENCTIVTTINAAGAVLDPTVIFKGVRFNQDWIADRNGPPGATYTCTESSFMCGDVFIKYIKNFHEQLRRRNLLDGKPHVLVLDGHASHVSFEVIQ 231
BLAST of mRNA_H-paniculata_contig20522.5320.1 vs. uniprot
Match: A0A6H5JGP6_9PHAE (DDE-1 domain-containing protein (Fragment) n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5JGP6_9PHAE) HSP 1 Score: 177 bits (448), Expect = 3.150e-45 Identity = 99/239 (41.42%), Postives = 133/239 (55.65%), Query Frame = 2
Query: 239 VLTAEEEATIEDLLVCAGRHCLGITRPELVENVR*LCNGGRNLPWDPLKGPGKAWFAAFFKRHPRLALDSSRIYEANRMSTDYRSRLKTFYDGWQELFVEVQPAPT-HIWNNDETGLNP-----------------------------------------------KGQRVQAAWVCNR-APPDSWYAATDSSFIQGSGYLSFMKKFKEFIDNSGLNDGEPHVLFLYGHASHVTIDVLK 808
VLT E E +ED L+ A RH +GI R L E+VR LCN GR++PWD GPG++W FFKRHP L+ S+RIYEANR+ +D +RL+TFY + E FV+ + P H+WN DETG P KGQR+QA W R APP++ A T+SSF+QG ++++++ F + + GL +G PHVL L GHASHVT +V+K
Sbjct: 17 VLTVEGENFVEDALLYAARHFIGIDRAALQEHVRQLCNDGRDIPWDAAVGPGRSWLDGFFKRHPALSECSARIYEANRIMSDDETRLQTFYKDFGE-FVDKEKIPADHLWNTDETGSTPQGTKTMKVIAESGQKVVGAIHSKSRENVTVVVTISTVGATLAPWIIYKGQRLQADWAKGRNAPPNARLAVTNSSFMQGIVFVNYIRDFHRQLLDRGLINGTPHVLVLDGHASHVTYEVVK 254
BLAST of mRNA_H-paniculata_contig20522.5320.1 vs. uniprot
Match: A0A6H5L0Y6_9PHAE (DDE-1 domain-containing protein (Fragment) n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5L0Y6_9PHAE) HSP 1 Score: 174 bits (440), Expect = 4.010e-45 Identity = 88/214 (41.12%), Postives = 121/214 (56.54%), Query Frame = 2
Query: 269 EDLLVCAGRHCLGITRPELVENVR*LCNGGRNLPWDPLKGPGKAWFAAFFKRHPRLALDSSRIYEANRMSTDYRSRLKTFYDGWQELFVEVQPAPTHIWNNDETG-----------------------------LNP----KGQRVQAAWVCNR-APPDSWYAATDSSFIQGSGYLSFMKKFKEFIDNSGLNDGEPHVLFLYGHASHVTIDVLK 808
+D+L+ AGR+ + +TR +L E VR LCN GR +PWDP KGPGK+W F +RH R++L +RIYEANRM++ RL Y WQE E +PAP H+WN DE+G L P KG R W+ +R PP + Y T+SSF+ G ++ ++K F E + L DG+PHVL L GHASHV+ +V++
Sbjct: 4 KDVLLYAGRNYIPLTRNDLEERVRQLCNDGRPIPWDPDKGPGKSWLQGFLRRHDRISLRLARIYEANRMTSPEDDRLHNIYKFWQEFVNEHKPAPDHVWNTDESGAASGAPDARQLARKLHDRHHYCINAAGAVLGPTVIFKGVRFNQDWIADRNGPPGATYTCTESSFMCGDVFIKYIKNFHEQLRRRNLLDGKPHVLVLDGHASHVSFEVIQ 217 The following BLAST results are available for this feature:
BLAST of mRNA_H-paniculata_contig20522.5320.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 vs UniRef90) Total hits: 25
Pagesback to topAlignments
The following features are aligned
Analyses
This mRNA is derived from or has results from the following analyses
Properties
Relationships
The following polypeptide feature(s) derives from this mRNA:
The following UTR feature(s) are a part of this mRNA:
The following CDS feature(s) are a part of this mRNA:
Sequences
The following sequences are available for this feature:
protein sequence of mRNA_H-paniculata_contig20522.5320.1 >prot_H-paniculata_contig20522.5320.1 ID=prot_H-paniculata_contig20522.5320.1|Name=mRNA_H-paniculata_contig20522.5320.1|organism=Halopteris paniculata Hal_grac_a_UBK monoicous|type=polypeptide|length=161bp MSTDYRSRLKTFYDGWQELFVEVQPAPTHIWNNDETGLNPKGQRVQAAWVback to top mRNA from alignment at H-paniculata_contig20522:2..1741+ Legend: UTRpolypeptideCDS Hold the cursor over a type above to highlight its positions in the sequence below.>mRNA_H-paniculata_contig20522.5320.1 ID=mRNA_H-paniculata_contig20522.5320.1|Name=mRNA_H-paniculata_contig20522.5320.1|organism=Halopteris paniculata Hal_grac_a_UBK monoicous|type=mRNA|length=1740bp|location=Sequence derived from alignment at H-paniculata_contig20522:2..1741+ (Halopteris paniculata Hal_grac_a_UBK monoicous)back to top Coding sequence (CDS) from alignment at H-paniculata_contig20522:2..1741+ >mRNA_H-paniculata_contig20522.5320.1 ID=mRNA_H-paniculata_contig20522.5320.1|Name=mRNA_H-paniculata_contig20522.5320.1|organism=Halopteris paniculata Hal_grac_a_UBK monoicous|type=CDS|length=966bp|location=Sequence derived from alignment at H-paniculata_contig20522:2..1741+ (Halopteris paniculata Hal_grac_a_UBK monoicous)back to top |