mRNA_H-paniculata_contig20425.5295.1 (mRNA) Halopteris paniculata Hal_grac_a_UBK monoicous

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_H-paniculata_contig20425.5295.1
Unique NamemRNA_H-paniculata_contig20425.5295.1
TypemRNA
OrganismHalopteris paniculata Hal_grac_a_UBK monoicous (Halopteris paniculata Hal_grac_a_UBK monoicous)
Homology
BLAST of mRNA_H-paniculata_contig20425.5295.1 vs. uniprot
Match: A0A834W4R7_9FABA (Retrovirus-related Pol polyprotein from transposon TNT 1-94 n=1 Tax=Senna tora TaxID=362788 RepID=A0A834W4R7_9FABA)

HSP 1 Score: 54.7 bits (130), Expect = 9.300e-7
Identity = 28/78 (35.90%), Postives = 50/78 (64.10%), Query Frame = 1
Query:   40 WVSDSGASNHMTNDLSKMYDLRKPVAGEDVVMFGDGSILVVDLVGKLDLIFHSTTYVPATLEVSYFPELNSNLFSLNK 273
            W +DSGA+NH+TNDLS +  +++P  G + V   +GS L +  +G  +LI +S T+     ++ + P+++ NL S++K
Sbjct:   64 WFADSGATNHLTNDLSNL-QVKQPYDGGEQVHIANGSGLAITHIGNSELISNSKTF--RLNQILHVPDVSKNLLSISK 138          
BLAST of mRNA_H-paniculata_contig20425.5295.1 vs. uniprot
Match: A0A151SCF9_CAJCA (Retrovirus-related Pol polyprotein from transposon TNT 1-94 n=1 Tax=Cajanus cajan TaxID=3821 RepID=A0A151SCF9_CAJCA)

HSP 1 Score: 53.1 bits (126), Expect = 3.880e-6
Identity = 26/79 (32.91%), Postives = 45/79 (56.96%), Query Frame = 1
Query:   37 MWVSDSGASNHMTNDLSKMYDLRKPVAGEDVVMFGDGSILVVDLVGKLDLIFHSTTYVPATLEVSYFPELNSNLFSLNK 273
            MW  DSGASNH+TND+S +   ++   G+  V+ GDG+ L++  +G   +    +    +   + Y P ++ NL S++K
Sbjct:   13 MWYPDSGASNHLTNDISYL-STKQEYQGKQRVLVGDGNSLLISHIGHSKMHTAQSNITFSLPNIMYIPNISKNLLSISK 90          
BLAST of mRNA_H-paniculata_contig20425.5295.1 vs. uniprot
Match: A0A5N6LS31_9ASTR (Uncharacterized protein n=1 Tax=Mikania micrantha TaxID=192012 RepID=A0A5N6LS31_9ASTR)

HSP 1 Score: 52.4 bits (124), Expect = 8.330e-6
Identity = 29/79 (36.71%), Postives = 49/79 (62.03%), Query Frame = 1
Query:   40 WVSDSGASNHMTNDLSKMYDLRKPVAGEDVVMFGDGSILVVDLVGKLDLIFHSTTYVPATLEVSYFPELNSNLFSLNKI 276
            W+ DSGAS+H+TNDLS +  L  P  G + ++ GDGS L +  +G L L F+S + +  +  V   P ++ N+ S++++
Sbjct:  159 WLFDSGASHHITNDLSAL-SLHAPYDGTEELVIGDGSSLKITHIGSLSLTFNSHSLLLTS--VLCVPLVSKNIISISQL 234          
BLAST of mRNA_H-paniculata_contig20425.5295.1 vs. uniprot
Match: A0A151T024_CAJCA (Uncharacterized protein n=1 Tax=Cajanus cajan TaxID=3821 RepID=A0A151T024_CAJCA)

HSP 1 Score: 51.2 bits (121), Expect = 8.830e-6
Identity = 25/79 (31.65%), Postives = 44/79 (55.70%), Query Frame = 1
Query:   37 MWVSDSGASNHMTNDLSKMYDLRKPVAGEDVVMFGDGSILVVDLVGKLDLIFHSTTYVPATLEVSYFPELNSNLFSLNK 273
            MW  DSGASNH+TND+S +   ++   G+   + GDG+ L++  +G   +       + +   + Y P ++ NL S++K
Sbjct:   13 MWYPDSGASNHLTNDISNLIT-KQEYQGKQHALVGDGNSLLISHIGHSKMHNVKPNIIFSLPNIMYVPNISKNLLSISK 90          
BLAST of mRNA_H-paniculata_contig20425.5295.1 vs. uniprot
Match: A0A6D2JUM8_9BRAS (Integrase catalytic domain-containing protein n=1 Tax=Microthlaspi erraticum TaxID=1685480 RepID=A0A6D2JUM8_9BRAS)

HSP 1 Score: 52.4 bits (124), Expect = 9.130e-6
Identity = 35/88 (39.77%), Postives = 48/88 (54.55%), Query Frame = 1
Query:   16 PTINNGNMWVSDSGASNHMTNDLSKMYDLRKPVAGEDVVMFGDGSILVVDLVGKLDLIFHSTTYVPATL-EVSYFPELNSNLFSLNKI 276
            PT N  N WV DSGA++H+T DLS +  L +P  G + V   DG+ L +   G   L    T   P TL +V Y P+L  NL S+ ++
Sbjct:  108 PTYN-ANNWVMDSGATHHLTTDLSNL-SLHQPYLGGEEVTIADGTNLHISHTGSSQL---PTLSKPLTLTDVLYVPDLKKNLISVYRL 190          
BLAST of mRNA_H-paniculata_contig20425.5295.1 vs. uniprot
Match: A0A6D2KMT9_9BRAS (Integrase catalytic domain-containing protein n=1 Tax=Microthlaspi erraticum TaxID=1685480 RepID=A0A6D2KMT9_9BRAS)

HSP 1 Score: 52.4 bits (124), Expect = 9.760e-6
Identity = 35/88 (39.77%), Postives = 48/88 (54.55%), Query Frame = 1
Query:   16 PTINNGNMWVSDSGASNHMTNDLSKMYDLRKPVAGEDVVMFGDGSILVVDLVGKLDLIFHSTTYVPATL-EVSYFPELNSNLFSLNKI 276
            PT N  N WV DSGA++H+T DLS +  L +P  G + V   DG+ L +   G   L    T   P TL +V Y P+L  NL S+ ++
Sbjct:  326 PTYN-ANNWVMDSGATHHLTTDLSNL-SLHQPYLGGEEVTIADGTNLHISHTGSSQL---PTLSKPLTLTDVLYVPDLKKNLISVYRL 408          
BLAST of mRNA_H-paniculata_contig20425.5295.1 vs. uniprot
Match: UPI001FB17F8C (uncharacterized protein LOC124913276 n=1 Tax=Impatiens glandulifera TaxID=253017 RepID=UPI001FB17F8C)

HSP 1 Score: 52.0 bits (123), Expect = 1.200e-5
Identity = 33/80 (41.25%), Postives = 45/80 (56.25%), Query Frame = 1
Query:   40 WVSDSGASNHMTNDLSKMYDLRKPVAGEDVVMFGDGSILVVDLVGKLDLIFHSTTYVPATLE-VSYFPELNSNLFSLNKI 276
            W  ++GASNHMT D  K ++L + V G+  V FGDGS   V + GK  ++F         LE V + P L SNL SL ++
Sbjct:  235 WFLENGASNHMTGDKEKFFELDEAVTGK--VKFGDGS--TVQICGKGSIMFECKNGDQWLLEGVFFIPSLKSNLVSLGQL 310          
BLAST of mRNA_H-paniculata_contig20425.5295.1 vs. uniprot
Match: A5BQA4_VITVI (Uncharacterized protein n=1 Tax=Vitis vinifera TaxID=29760 RepID=A5BQA4_VITVI)

HSP 1 Score: 52.0 bits (123), Expect = 1.300e-5
Identity = 33/91 (36.26%), Postives = 48/91 (52.75%), Query Frame = 1
Query:    1 LTNQNPTINNGNMWVSDSGASNHMTNDLSKMYDLRKPVAGEDVVMFGDGSILVVDLVGKLDLIFHSTTYVPATLEVSYFPELNSNLFSLNK 273
            +TN +PT      W+ DSGAS+H+T DLS +  L  P  G D +M GDGS L +   G      H+T++      V   P +  NL S+++
Sbjct:   15 VTNTSPTT---PQWLLDSGASHHVTADLSNL-SLHTPYTGFDDIMIGDGSSLPITHTGSTSFTTHNTSF--KLDNVLCVPSMRKNLISISQ 99          
BLAST of mRNA_H-paniculata_contig20425.5295.1 vs. uniprot
Match: A0A438HQ50_VITVI (Retrovirus-related Pol polyprotein from transposon RE2 n=1 Tax=Vitis vinifera TaxID=29760 RepID=A0A438HQ50_VITVI)

HSP 1 Score: 51.6 bits (122), Expect = 1.660e-5
Identity = 28/79 (35.44%), Postives = 45/79 (56.96%), Query Frame = 1
Query:   40 WVSDSGASNHMTNDLSKMYDLRKPVAGEDVVMFGDGSILVVDLVGKLDLIFHSTTYVPATLEVSYFPELNSNLFSLNKI 276
            W+ DSGAS+H+T+DLS +  +  P  G D +M GDG+ L +   G L +  H++    +   V   P +  NL S++K+
Sbjct:  230 WLLDSGASHHVTSDLSNL-SIHAPYNGSDDIMIGDGTGLPITHTGSLSI--HTSNAQFSLTNVLCVPSMKKNLISISKL 305          
BLAST of mRNA_H-paniculata_contig20425.5295.1 vs. uniprot
Match: A0A438HB65_VITVI (Retrovirus-related Pol polyprotein from transposon RE2 n=1 Tax=Vitis vinifera TaxID=29760 RepID=A0A438HB65_VITVI)

HSP 1 Score: 51.6 bits (122), Expect = 1.810e-5
Identity = 29/78 (37.18%), Postives = 42/78 (53.85%), Query Frame = 1
Query:   40 WVSDSGASNHMTNDLSKMYDLRKPVAGEDVVMFGDGSILVVDLVGKLDLIFHSTTYVPATLEVSYFPELNSNLFSLNK 273
            W+ DSGAS+H+T DLS +  L  P  G D +M GDGS L +   G      H+T++      V   P +  NL S+++
Sbjct:  126 WLLDSGASHHVTADLSNL-SLHTPYTGSDDIMIGDGSSLPITHTGSTSFTTHNTSF--KLDNVLCVPSMRKNLISISQ 200          
The following BLAST results are available for this feature:
BLAST of mRNA_H-paniculata_contig20425.5295.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 vs UniRef90)
Total hits: 16
Match NameE-valueIdentityDescription
A0A834W4R7_9FABA9.300e-735.90Retrovirus-related Pol polyprotein from transposon... [more]
A0A151SCF9_CAJCA3.880e-632.91Retrovirus-related Pol polyprotein from transposon... [more]
A0A5N6LS31_9ASTR8.330e-636.71Uncharacterized protein n=1 Tax=Mikania micrantha ... [more]
A0A151T024_CAJCA8.830e-631.65Uncharacterized protein n=1 Tax=Cajanus cajan TaxI... [more]
A0A6D2JUM8_9BRAS9.130e-639.77Integrase catalytic domain-containing protein n=1 ... [more]
A0A6D2KMT9_9BRAS9.760e-639.77Integrase catalytic domain-containing protein n=1 ... [more]
UPI001FB17F8C1.200e-541.25uncharacterized protein LOC124913276 n=1 Tax=Impat... [more]
A5BQA4_VITVI1.300e-536.26Uncharacterized protein n=1 Tax=Vitis vinifera Tax... [more]
A0A438HQ50_VITVI1.660e-535.44Retrovirus-related Pol polyprotein from transposon... [more]
A0A438HB65_VITVI1.810e-537.18Retrovirus-related Pol polyprotein from transposon... [more]

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Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
H-paniculata_contig20425contigH-paniculata_contig20425:313..597 -
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 vs UniRef902022-09-19
OGS1.0 of Halopteris paniculata Hal_grac_a_UBK monoicous2021-02-24
Properties
Property NameValue
Hectar predicted targeting categoryother localisation
Exons1
Model size285
Cds size285
Stop1
Start0
Relationships

The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1622929531.6899164-CDS-H-paniculata_contig20425:312..5971622929531.6899164-CDS-H-paniculata_contig20425:312..597Halopteris paniculata Hal_grac_a_UBK monoicousCDSH-paniculata_contig20425 313..597 -
1691480901.249329-CDS-H-paniculata_contig20425:312..5971691480901.249329-CDS-H-paniculata_contig20425:312..597Halopteris paniculata Hal_grac_a_UBK monoicousCDSH-paniculata_contig20425 313..597 -


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_H-paniculata_contig20425.5295.1prot_H-paniculata_contig20425.5295.1Halopteris paniculata Hal_grac_a_UBK monoicouspolypeptideH-paniculata_contig20425 313..597 -


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_H-paniculata_contig20425.5295.1

>prot_H-paniculata_contig20425.5295.1 ID=prot_H-paniculata_contig20425.5295.1|Name=mRNA_H-paniculata_contig20425.5295.1|organism=Halopteris paniculata Hal_grac_a_UBK monoicous|type=polypeptide|length=95bp
LTNQNPTINNGNMWVSDSGASNHMTNDLSKMYDLRKPVAGEDVVMFGDGS
ILVVDLVGKLDLIFHSTTYVPATLEVSYFPELNSNLFSLNKIQG*
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mRNA from alignment at H-paniculata_contig20425:313..597-

Legend: CDSpolypeptide
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_H-paniculata_contig20425.5295.1 ID=mRNA_H-paniculata_contig20425.5295.1|Name=mRNA_H-paniculata_contig20425.5295.1|organism=Halopteris paniculata Hal_grac_a_UBK monoicous|type=mRNA|length=285bp|location=Sequence derived from alignment at H-paniculata_contig20425:313..597- (Halopteris paniculata Hal_grac_a_UBK monoicous)
TTGACGAATCAAAATCCAACTATTAACAATGGCAATATGTGGGTGTCTGA TTCTGGTGCAAGTAACCACATGACGAACGATCTTTCAAAGATGTATGACC TTCGCAAGCCGGTGGCAGGGGAAGATGTGGTAATGTTCGGGGATGGATCG ATTCTGGTGGTAGATTTGGTGGGAAAATTGGATTTGATTTTTCACTCCAC TACTTACGTGCCTGCCACACTTGAAGTATCATACTTCCCGGAGTTGAACT CCAACCTGTTTTCCCTCAACAAAATCCAAGGGTAG
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Coding sequence (CDS) from alignment at H-paniculata_contig20425:313..597-

>mRNA_H-paniculata_contig20425.5295.1 ID=mRNA_H-paniculata_contig20425.5295.1|Name=mRNA_H-paniculata_contig20425.5295.1|organism=Halopteris paniculata Hal_grac_a_UBK monoicous|type=CDS|length=570bp|location=Sequence derived from alignment at H-paniculata_contig20425:313..597- (Halopteris paniculata Hal_grac_a_UBK monoicous)
TTGACGAATCAAAATCCAACTATTAACAATGGCAATATGTGGGTGTCTGA
TTCTGGTGCAAGTAACCACATGACGAACGATCTTTCAAAGATGTATGACC
TTCGCAAGCCGGTGGCAGGGGAAGATGTGGTAATGTTCGGGGATGGATCG
ATTCTGGTGGTAGATTTGGTGGGAAAATTGGATTTGATTTTTCACTCCAC
TACTTACGTGCCTGCCACACTTGAAGTATCATACTTCCCGGAGTTGAACT
CCAACCTGTTTTCCCTCAACAAAATCCAAGGGTAGTTGACGAATCAAAAT
CCAACTATTAACAATGGCAATATGTGGGTGTCTGATTCTGGTGCAAGTAA
CCACATGACGAACGATCTTTCAAAGATGTATGACCTTCGCAAGCCGGTGG
CAGGGGAAGATGTGGTAATGTTCGGGGATGGATCGATTCTGGTGGTAGAT
TTGGTGGGAAAATTGGATTTGATTTTTCACTCCACTACTTACGTGCCTGC
CACACTTGAAGTATCATACTTCCCGGAGTTGAACTCCAACCTGTTTTCCC
TCAACAAAATCCAAGGGTAG
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