mRNA_H-paniculata_contig20425.5295.1 (mRNA) Halopteris paniculata Hal_grac_a_UBK monoicous
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Overview
Homology
BLAST of mRNA_H-paniculata_contig20425.5295.1 vs. uniprot
Match: A0A834W4R7_9FABA (Retrovirus-related Pol polyprotein from transposon TNT 1-94 n=1 Tax=Senna tora TaxID=362788 RepID=A0A834W4R7_9FABA) HSP 1 Score: 54.7 bits (130), Expect = 9.300e-7 Identity = 28/78 (35.90%), Postives = 50/78 (64.10%), Query Frame = 1
Query: 40 WVSDSGASNHMTNDLSKMYDLRKPVAGEDVVMFGDGSILVVDLVGKLDLIFHSTTYVPATLEVSYFPELNSNLFSLNK 273
W +DSGA+NH+TNDLS + +++P G + V +GS L + +G +LI +S T+ ++ + P+++ NL S++K
Sbjct: 64 WFADSGATNHLTNDLSNL-QVKQPYDGGEQVHIANGSGLAITHIGNSELISNSKTF--RLNQILHVPDVSKNLLSISK 138
BLAST of mRNA_H-paniculata_contig20425.5295.1 vs. uniprot
Match: A0A151SCF9_CAJCA (Retrovirus-related Pol polyprotein from transposon TNT 1-94 n=1 Tax=Cajanus cajan TaxID=3821 RepID=A0A151SCF9_CAJCA) HSP 1 Score: 53.1 bits (126), Expect = 3.880e-6 Identity = 26/79 (32.91%), Postives = 45/79 (56.96%), Query Frame = 1
Query: 37 MWVSDSGASNHMTNDLSKMYDLRKPVAGEDVVMFGDGSILVVDLVGKLDLIFHSTTYVPATLEVSYFPELNSNLFSLNK 273
MW DSGASNH+TND+S + ++ G+ V+ GDG+ L++ +G + + + + Y P ++ NL S++K
Sbjct: 13 MWYPDSGASNHLTNDISYL-STKQEYQGKQRVLVGDGNSLLISHIGHSKMHTAQSNITFSLPNIMYIPNISKNLLSISK 90
BLAST of mRNA_H-paniculata_contig20425.5295.1 vs. uniprot
Match: A0A5N6LS31_9ASTR (Uncharacterized protein n=1 Tax=Mikania micrantha TaxID=192012 RepID=A0A5N6LS31_9ASTR) HSP 1 Score: 52.4 bits (124), Expect = 8.330e-6 Identity = 29/79 (36.71%), Postives = 49/79 (62.03%), Query Frame = 1
Query: 40 WVSDSGASNHMTNDLSKMYDLRKPVAGEDVVMFGDGSILVVDLVGKLDLIFHSTTYVPATLEVSYFPELNSNLFSLNKI 276
W+ DSGAS+H+TNDLS + L P G + ++ GDGS L + +G L L F+S + + + V P ++ N+ S++++
Sbjct: 159 WLFDSGASHHITNDLSAL-SLHAPYDGTEELVIGDGSSLKITHIGSLSLTFNSHSLLLTS--VLCVPLVSKNIISISQL 234
BLAST of mRNA_H-paniculata_contig20425.5295.1 vs. uniprot
Match: A0A151T024_CAJCA (Uncharacterized protein n=1 Tax=Cajanus cajan TaxID=3821 RepID=A0A151T024_CAJCA) HSP 1 Score: 51.2 bits (121), Expect = 8.830e-6 Identity = 25/79 (31.65%), Postives = 44/79 (55.70%), Query Frame = 1
Query: 37 MWVSDSGASNHMTNDLSKMYDLRKPVAGEDVVMFGDGSILVVDLVGKLDLIFHSTTYVPATLEVSYFPELNSNLFSLNK 273
MW DSGASNH+TND+S + ++ G+ + GDG+ L++ +G + + + + Y P ++ NL S++K
Sbjct: 13 MWYPDSGASNHLTNDISNLIT-KQEYQGKQHALVGDGNSLLISHIGHSKMHNVKPNIIFSLPNIMYVPNISKNLLSISK 90
BLAST of mRNA_H-paniculata_contig20425.5295.1 vs. uniprot
Match: A0A6D2JUM8_9BRAS (Integrase catalytic domain-containing protein n=1 Tax=Microthlaspi erraticum TaxID=1685480 RepID=A0A6D2JUM8_9BRAS) HSP 1 Score: 52.4 bits (124), Expect = 9.130e-6 Identity = 35/88 (39.77%), Postives = 48/88 (54.55%), Query Frame = 1
Query: 16 PTINNGNMWVSDSGASNHMTNDLSKMYDLRKPVAGEDVVMFGDGSILVVDLVGKLDLIFHSTTYVPATL-EVSYFPELNSNLFSLNKI 276
PT N N WV DSGA++H+T DLS + L +P G + V DG+ L + G L T P TL +V Y P+L NL S+ ++
Sbjct: 108 PTYN-ANNWVMDSGATHHLTTDLSNL-SLHQPYLGGEEVTIADGTNLHISHTGSSQL---PTLSKPLTLTDVLYVPDLKKNLISVYRL 190
BLAST of mRNA_H-paniculata_contig20425.5295.1 vs. uniprot
Match: A0A6D2KMT9_9BRAS (Integrase catalytic domain-containing protein n=1 Tax=Microthlaspi erraticum TaxID=1685480 RepID=A0A6D2KMT9_9BRAS) HSP 1 Score: 52.4 bits (124), Expect = 9.760e-6 Identity = 35/88 (39.77%), Postives = 48/88 (54.55%), Query Frame = 1
Query: 16 PTINNGNMWVSDSGASNHMTNDLSKMYDLRKPVAGEDVVMFGDGSILVVDLVGKLDLIFHSTTYVPATL-EVSYFPELNSNLFSLNKI 276
PT N N WV DSGA++H+T DLS + L +P G + V DG+ L + G L T P TL +V Y P+L NL S+ ++
Sbjct: 326 PTYN-ANNWVMDSGATHHLTTDLSNL-SLHQPYLGGEEVTIADGTNLHISHTGSSQL---PTLSKPLTLTDVLYVPDLKKNLISVYRL 408
BLAST of mRNA_H-paniculata_contig20425.5295.1 vs. uniprot
Match: UPI001FB17F8C (uncharacterized protein LOC124913276 n=1 Tax=Impatiens glandulifera TaxID=253017 RepID=UPI001FB17F8C) HSP 1 Score: 52.0 bits (123), Expect = 1.200e-5 Identity = 33/80 (41.25%), Postives = 45/80 (56.25%), Query Frame = 1
Query: 40 WVSDSGASNHMTNDLSKMYDLRKPVAGEDVVMFGDGSILVVDLVGKLDLIFHSTTYVPATLE-VSYFPELNSNLFSLNKI 276
W ++GASNHMT D K ++L + V G+ V FGDGS V + GK ++F LE V + P L SNL SL ++
Sbjct: 235 WFLENGASNHMTGDKEKFFELDEAVTGK--VKFGDGS--TVQICGKGSIMFECKNGDQWLLEGVFFIPSLKSNLVSLGQL 310
BLAST of mRNA_H-paniculata_contig20425.5295.1 vs. uniprot
Match: A5BQA4_VITVI (Uncharacterized protein n=1 Tax=Vitis vinifera TaxID=29760 RepID=A5BQA4_VITVI) HSP 1 Score: 52.0 bits (123), Expect = 1.300e-5 Identity = 33/91 (36.26%), Postives = 48/91 (52.75%), Query Frame = 1
Query: 1 LTNQNPTINNGNMWVSDSGASNHMTNDLSKMYDLRKPVAGEDVVMFGDGSILVVDLVGKLDLIFHSTTYVPATLEVSYFPELNSNLFSLNK 273
+TN +PT W+ DSGAS+H+T DLS + L P G D +M GDGS L + G H+T++ V P + NL S+++
Sbjct: 15 VTNTSPTT---PQWLLDSGASHHVTADLSNL-SLHTPYTGFDDIMIGDGSSLPITHTGSTSFTTHNTSF--KLDNVLCVPSMRKNLISISQ 99
BLAST of mRNA_H-paniculata_contig20425.5295.1 vs. uniprot
Match: A0A438HQ50_VITVI (Retrovirus-related Pol polyprotein from transposon RE2 n=1 Tax=Vitis vinifera TaxID=29760 RepID=A0A438HQ50_VITVI) HSP 1 Score: 51.6 bits (122), Expect = 1.660e-5 Identity = 28/79 (35.44%), Postives = 45/79 (56.96%), Query Frame = 1
Query: 40 WVSDSGASNHMTNDLSKMYDLRKPVAGEDVVMFGDGSILVVDLVGKLDLIFHSTTYVPATLEVSYFPELNSNLFSLNKI 276
W+ DSGAS+H+T+DLS + + P G D +M GDG+ L + G L + H++ + V P + NL S++K+
Sbjct: 230 WLLDSGASHHVTSDLSNL-SIHAPYNGSDDIMIGDGTGLPITHTGSLSI--HTSNAQFSLTNVLCVPSMKKNLISISKL 305
BLAST of mRNA_H-paniculata_contig20425.5295.1 vs. uniprot
Match: A0A438HB65_VITVI (Retrovirus-related Pol polyprotein from transposon RE2 n=1 Tax=Vitis vinifera TaxID=29760 RepID=A0A438HB65_VITVI) HSP 1 Score: 51.6 bits (122), Expect = 1.810e-5 Identity = 29/78 (37.18%), Postives = 42/78 (53.85%), Query Frame = 1
Query: 40 WVSDSGASNHMTNDLSKMYDLRKPVAGEDVVMFGDGSILVVDLVGKLDLIFHSTTYVPATLEVSYFPELNSNLFSLNK 273
W+ DSGAS+H+T DLS + L P G D +M GDGS L + G H+T++ V P + NL S+++
Sbjct: 126 WLLDSGASHHVTADLSNL-SLHTPYTGSDDIMIGDGSSLPITHTGSTSFTTHNTSF--KLDNVLCVPSMRKNLISISQ 200 The following BLAST results are available for this feature:
BLAST of mRNA_H-paniculata_contig20425.5295.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 vs UniRef90) Total hits: 16
Pagesback to topAlignments
The following features are aligned
Analyses
This mRNA is derived from or has results from the following analyses
Properties
Relationships
The following CDS feature(s) are a part of this mRNA:
The following polypeptide feature(s) derives from this mRNA:
Sequences
The following sequences are available for this feature:
protein sequence of mRNA_H-paniculata_contig20425.5295.1 >prot_H-paniculata_contig20425.5295.1 ID=prot_H-paniculata_contig20425.5295.1|Name=mRNA_H-paniculata_contig20425.5295.1|organism=Halopteris paniculata Hal_grac_a_UBK monoicous|type=polypeptide|length=95bp LTNQNPTINNGNMWVSDSGASNHMTNDLSKMYDLRKPVAGEDVVMFGDGSback to top mRNA from alignment at H-paniculata_contig20425:313..597- Legend: CDSpolypeptide Hold the cursor over a type above to highlight its positions in the sequence below.>mRNA_H-paniculata_contig20425.5295.1 ID=mRNA_H-paniculata_contig20425.5295.1|Name=mRNA_H-paniculata_contig20425.5295.1|organism=Halopteris paniculata Hal_grac_a_UBK monoicous|type=mRNA|length=285bp|location=Sequence derived from alignment at H-paniculata_contig20425:313..597- (Halopteris paniculata Hal_grac_a_UBK monoicous)back to top Coding sequence (CDS) from alignment at H-paniculata_contig20425:313..597- >mRNA_H-paniculata_contig20425.5295.1 ID=mRNA_H-paniculata_contig20425.5295.1|Name=mRNA_H-paniculata_contig20425.5295.1|organism=Halopteris paniculata Hal_grac_a_UBK monoicous|type=CDS|length=570bp|location=Sequence derived from alignment at H-paniculata_contig20425:313..597- (Halopteris paniculata Hal_grac_a_UBK monoicous)back to top |