prot_H-paniculata_contig20365.5275.1 (polypeptide) Halopteris paniculata Hal_grac_a_UBK monoicous

You are viewing a polypeptide, more information available on the corresponding mRNA page

Overview
NamemRNA_H-paniculata_contig20365.5275.1
Unique Nameprot_H-paniculata_contig20365.5275.1
Typepolypeptide
OrganismHalopteris paniculata Hal_grac_a_UBK monoicous (Halopteris paniculata Hal_grac_a_UBK monoicous)
Sequence length275
Homology
BLAST of mRNA_H-paniculata_contig20365.5275.1 vs. uniprot
Match: W7TCB8_9STRA (Gag-pol polyprotein n=3 Tax=Nannochloropsis gaditana TaxID=72520 RepID=W7TCB8_9STRA)

HSP 1 Score: 177 bits (449), Expect = 5.500e-49
Identity = 112/304 (36.84%), Postives = 162/304 (53.29%), Query Frame = 0
Query:    1 MSTLCTVFSLVTERDFELEGMGVDATYLNAPVEEELFVKPPPEFSPF-SRDKPFVRRLRKSLYGLKQSGRNWNNTLDDFLVGIGLARSTTDSCLYFSRDDGGETNLLVVVYVDDLVIAGR-REKVDEFKHNISQHFRMKDLGSLSRMLGIEVRHDRPNGPMTISQGSYIREVLKIYGFDEGRGVPTPVEGKVKTRHPSRPTSPPNR---------------------------SHLE-------LTYKRLFRYLSTVPDFGIMFGGKSNGH-GLEGFVDADWAEDVEDRKSTTGYVFKLNGGAI 267
            ++T+  V +L    D EL+ M V+  YL + +EE+++VK PP +  + S  +  V RLRKSLYGLKQSGRNW+  +D +  G G   S+ D CLY      GE  L++V+YVDDL+I    RE V +FKH IS+ F MKDL  L  +LG+ ++ DR    M ISQ +YI  +L  +   + + V TP+EG + T+   +   P N                             HL+       +  KR+ RYL    + G+ + G S G   L G+ DAD+A D ++R+ST+GY F L+ G I
Sbjct:   64 ITTIRLVLALACILDLELDNMDVEPAYLQSDLEEKVYVKQPPGYEQYGSNGEELVCRLRKSLYGLKQSGRNWHKKIDGWFRGYGFHPSSADPCLYVKFGSSGEI-LVIVLYVDDLIITSNSREMVGKFKHAISREFSMKDLKELDWILGMAIKRDRGKRVMEISQTAYIDMMLAKFRMADCKPVLTPMEGTL-TKMDGKDVKPDNEYMKLVGSLLYAALVTRPDIAFAVQSLGKHLQGSNEEHWIAAKRVLRYLKGTREVGLKYTGNSTGSFTLVGYADADYAGDKDNRRSTSGYAFTLSHGEI 365          
BLAST of mRNA_H-paniculata_contig20365.5275.1 vs. uniprot
Match: W7TJ26_9STRA (Gag-pol polyprotein n=2 Tax=Nannochloropsis gaditana TaxID=72520 RepID=W7TJ26_9STRA)

HSP 1 Score: 179 bits (455), Expect = 3.360e-48
Identity = 114/315 (36.19%), Postives = 166/315 (52.70%), Query Frame = 0
Query:    1 MSTLCTVFSLVTERDFELEGMGVDATYLNAPVEEELFVKPPPEFSPFSRDK-PFVRRLRKSLYGLKQSGRNWNNTLDDFLVGIGLARSTTDSCLYFSRDDGGETNLLVVVYVDDLVIAGR-REKVDEFKHNISQHFRMKDLGSLSRMLGIEVRHDRPNGPMTISQGSYIREVLKIYGFDEGRGVPTPVEGKVKTRHPSRPTSPPNR---------------------------SHLE-------LTYKRLFRYLSTVPDFGIMFGGKSNGH-GLEGFVDADWAEDVEDRKSTTGYVFKLNGG----AIRWCSRKR 274
            M+T+  V +L    D EL+ M VD  YL + +EE++++K PP +  +  +    V RLRKSLYGLKQSGRNW+  +D +  G GL  S  D CLY      GE  L++V+YVDDL+I    R   D+FK +IS+ F MKDL  L  +LG+ ++ +R N  M ISQ  YI  +L  +G  + + V TP+EG + T+   +   P N                             HL+       +  KR+ RYL    D G+ + G S G   L G+ DAD+A D ++R+ST+GY F L+ G     I W ++++
Sbjct:  284 MTTIRLVLALACILDLELDNMDVDTAYLQSDLEEKVYIKQPPGYEKYGPNGGELVCRLRKSLYGLKQSGRNWHKKIDGWFRGYGLHPSYADPCLYVKFASSGEI-LVIVLYVDDLIIGSNSRTMTDKFKQDISREFSMKDLKELDWILGMGIKRNRENRTMEISQTGYIGMMLNKFGMADCKSVLTPMEGTL-TKMDGKDVKPDNEYMKLVGSLLYAALVTRPDIAFAVQSLGKHLQGSNKEHWIAAKRVLRYLKGTRDVGLKYTGNSTGSFTLVGYADADYAGDKDNRRSTSGYTFTLSHGDDVNTIDWKAKQQ 596          
BLAST of mRNA_H-paniculata_contig20365.5275.1 vs. uniprot
Match: A0A8D8HJI9_CULPI (Copia protein n=1 Tax=Culex pipiens TaxID=7175 RepID=A0A8D8HJI9_CULPI)

HSP 1 Score: 173 bits (439), Expect = 4.420e-47
Identity = 103/309 (33.33%), Postives = 154/309 (49.84%), Query Frame = 0
Query:    1 MSTLCTVFSLVTERDFELEGMGVDATYLNAPVEEELFVKPPPEFSPFSRDKPFVRRLRKSLYGLKQSGRNWNNTLDDFLVGIGLARSTTDSCLYFSRDDGGETNLLVVVYVDDLVIAGRREK-VDEFKHNISQHFRMKDLGSLSRMLGIEVRHDRPNGPMTISQGSYIREVLKIYGFDEGRGVPTPVEGKVKTRH--PSRPTSPPNRS------HLELT--------------------------YKRLFRYLSTVPDFGIMFGGKSNGHGLEGFVDADWAEDVEDRKSTTGYVFKLNGGAIRWCSRKR 274
            M+TL  + +L     + L  M V   +LN  ++E++++  PP F    R K  V +L +S+YGLKQS RNWN   DD++  +G  RS  D CLY  + DG  T +L+  YVDD++IAG   K +   K  +S  F MKD+      LG+ +  DR  G MTI Q +Y   VLK +G +  +  P P++ ++K     P   T  P +       +L +T                           KR+ RYL    D+ +++    +  G+E F DADW  D  DRKS +G+V KL+G  + W +RK+
Sbjct:   93 MATLRILLALANHEGWHLHQMDVKCAFLNGSLDEDIYMCQPPGFE---RGKDLVCKLNRSIYGLKQSSRNWNRRFDDYVTKLGFKRSQHDLCLYHWKADGVVTYMLI--YVDDILIAGNDLKAIRALKGKLSTEFEMKDMEEAKIFLGLRIDRDRKAGSMTIDQKAYTLGVLKRFGMENCKSSPVPMQPRLKLERGDPKELTEKPYKELVGCLMYLTVTSRPDICPAVNYFASFQSSATEEHWVHLKRVLRYLQGTLDYKLIYQRMDSAVGVEAFADADWGNDPTDRKSVSGFVLKLHGQTVNWSTRKQ 396          
BLAST of mRNA_H-paniculata_contig20365.5275.1 vs. uniprot
Match: A0A2N9J6A9_FAGSY (Integrase catalytic domain-containing protein n=1 Tax=Fagus sylvatica TaxID=28930 RepID=A0A2N9J6A9_FAGSY)

HSP 1 Score: 177 bits (449), Expect = 9.870e-47
Identity = 103/282 (36.52%), Postives = 163/282 (57.80%), Query Frame = 0
Query:    2 STLCTVFSLVTERDFELEGMGVDATYLNAPVEEELFVKPPPEFSPFSRDKPFVRRLRKSLYGLKQSGRNWNNTLDDFLVGIGLARSTTDSCLYFSRDDGGETNLLVVVYVDDLVIAGRRE-KVDEFKHNISQHFRMKDLGSLSRMLGIEVRHDRPNGPMTISQGSYIREVLKIYGFDEGRGVPTPVEG--KVKTRHP---------SRPTSPPNRSHLELTYKRLFRYLSTVPDFGIMFGGKSNGHGLEGFVDADWAEDVEDRKSTTGYVFKLNGGAIRWCS 271
            +++  V +LV ++D ELE + V   +L+  +EEE+F+  P  F     +   V RL+KSLYGLKQS R W    D +++ IG  R   D C+Y    + G + + +++YVDD++IA +   +V+  K  + + F MKDLG+  ++LG+E+R DR    + +SQ +YIR+VL+ +   + + V TP+    ++    P         SR  + P R H     K +FRYL    + GI+F  +   + + G+VDAD+A +V+DR+STTGYVF L+GG I W S
Sbjct:  781 TSIRAVLALVADQDLELEQLDVKTAFLHGNLEEEIFMVQPEGFKQPGTEN-LVCRLKKSLYGLKQSPRQWYKRFDSYMIQIGYTRCEYDCCVYVRILEDG-SYIFLLLYVDDMLIAAKSMCEVNRLKSLLHKEFEMKDLGAAKKILGMEIRRDREARKLWLSQKNYIRKVLEKFSMLDAKPVSTPLANHFRLSGSQPDLAHAVSTVSRYMANPGREHWNAV-KWIFRYLKGTAEHGILFSRQPGTNSVVGYVDADYAGEVDDRRSTTGYVFTLSGGPICWKS 1059          
BLAST of mRNA_H-paniculata_contig20365.5275.1 vs. uniprot
Match: A0A5D6YB57_9STRA (Reverse transcriptase Ty1/copia-type domain-containing protein (Fragment) n=1 Tax=Pythium brassicum TaxID=1485010 RepID=A0A5D6YB57_9STRA)

HSP 1 Score: 171 bits (432), Expect = 1.100e-46
Identity = 105/310 (33.87%), Postives = 155/310 (50.00%), Query Frame = 0
Query:    7 VFSLVTERDFELEGMGVDATYLNAPVEEELFVKPPPEFSPFSRDKPFVRRLRKSLYGLKQSGRNWNNTLDDFLVGIGLARSTTDSCLYFSRDDGGETNLLVVVYVDDLVIA-GRREKVDEFKHNISQHFRMKDLGSLSRMLGIEVRHDRPNGPMTISQGSYIREVLKIYGFDEGRGVPTPVEGKVKT---------RHPSRPTSPPNRSHLELTY--------------------------------KRLFRYLSTVPDFGIMFGGKSNGHGLEGFVDADWAEDVEDRKSTTGYVFKLNGGAIRWCSRKR 274
            + S+  +    L  M V   +LN  +EEE+++K P  F   ++    V +L+++LYGLKQS R WN T+D+F+  IG  +  TD C+Y  RDD  +  + VV+YVDDL++A    + +   K  +S+ F M DLG L   LG+EV  D  +G +++ Q  ++  VL  +G  + + V TP +  +K          +H       P RS +                                    KR+ RYL   P  GI F G  +G  L G+ DADWA D+E R+ST+GYVF LNGG I W S+K+
Sbjct:   90 ILSIAAQYKLVLHQMDVKTAFLNGLLEEEIYMKQPNGFVD-AKYPDHVCKLKRALYGLKQSPRMWNQTIDEFMRKIGFTKCETDHCVYVKRDD--KAMIFVVLYVDDLILACNDTDLLAATKRALSERFEMSDLGELKYCLGMEVERDDKSGDVSMRQTKFLHSVLAKFGMQDCKPVKTPQDPGLKLTKAMCEGGCKHDDTMQGVPYRSAVGAVMYLMVGTRPDLAAAVGVLSQFAADPCPTHWQALKRVLRYLQATPTHGIRFAGSGDGE-LIGYSDADWAGDIETRRSTSGYVFVLNGGCITWRSKKQ 395          
BLAST of mRNA_H-paniculata_contig20365.5275.1 vs. uniprot
Match: A0A438E4C5_VITVI (Retrovirus-related Pol polyprotein from transposon TNT 1-94 n=1 Tax=Vitis vinifera TaxID=29760 RepID=A0A438E4C5_VITVI)

HSP 1 Score: 169 bits (427), Expect = 1.850e-46
Identity = 97/282 (34.40%), Postives = 156/282 (55.32%), Query Frame = 0
Query:    1 MSTLCTVFSLVTERDFELEGMGVDATYLNAPVEEELFVKPPPEFSPFSRDKPFVRRLRKSLYGLKQSGRNWNNTLDDFLVGIGLARSTTDSCLYFSRDDGGETNLLVVVYVDDLVIAGRR-EKVDEFKHNISQHFRMKDLGSLSRMLGIEVRHDRPNGPMTISQGSYIREVLKIYGFDEGRGVPTPVEGKVKTRHPSRPTSPPNRSHL-ELTYKR-----LFRYLSTVPDF----GIMFGGKSNGHGLEGFVDADWAEDVEDRKSTTGYVFKLNGGAIRWCS 271
            MST+  V  +V   +  LE + V   +L+  +EE+L++  P  F    ++   V +LRKSLYGLKQ+ R W    D+F+  IG  R   D C Y    D   + +++++YVDD++I G   EK++  K  +S+ F MKDLG+  ++LG+ +  D+ NG + +SQ  Y+++VL  +  +E + V TP+    K      P +   R ++ ++ Y       ++  + T PD     G++    S    L+G+VDAD+A D++ RKSTTG+VF L G AI W S
Sbjct:   46 MSTIRLVLGMVAVENLHLEQLDVKTAFLHGDLEEDLYMIQPEGFIVQGQEN-LVCKLRKSLYGLKQAPRQWYKKFDNFMHRIGFKRCEADHCCYVKSFDN--SYIILLLYVDDMLIVGSDIEKINNLKKQLSKQFAMKDLGAAKQILGMRIIRDKANGTLKLSQSEYVKKVLSRFNMNEAKPVSTPLGSHFKLSKEQSPKTEEERDYMSKVPYASAIGSLMYAMVCTRPDIAHAVGVVSRFMSASLKLQGYVDADFAGDIDSRKSTTGFVFTLGGTAISWTS 324          
BLAST of mRNA_H-paniculata_contig20365.5275.1 vs. uniprot
Match: W7TIM1_9STRA (Gag-pol polyprotein n=1 Tax=Nannochloropsis gaditana TaxID=72520 RepID=W7TIM1_9STRA)

HSP 1 Score: 176 bits (446), Expect = 2.210e-46
Identity = 113/315 (35.87%), Postives = 167/315 (53.02%), Query Frame = 0
Query:    1 MSTLCTVFSLVTERDFELEGMGVDATYLNAPVEEELFVKPPPEFSPFSRD-KPFVRRLRKSLYGLKQSGRNWNNTLDDFLVGIGLARSTTDSCLYFSRDDGGETNLLVVVYVDDLVIAGR-REKVDEFKHNISQHFRMKDLGSLSRMLGIEVRHDRPNGPMTISQGSYIREVLKIYGFDEGRGVPTPVEGKVKTRHPSRPTSPPNR---------------------------SHLE-------LTYKRLFRYLSTVPDFGIMFGGKSNGH-GLEGFVDADWAEDVEDRKSTTGYVFKLNGG----AIRWCSRKR 274
            ++T+  + ++    D EL+ M V+  YL + +EE+++VK P  +  +  + +  V RLRKSLYGLKQSGRNW+  +D +  G G   S+ D CLY      GE  L++V+YVDDL+I    RE VD+FK  IS+ F MKDL  L  +LG+ ++ +R    M ISQ +YI  VL  +G  + R V TP+EG + T+   +   P N                             HL+       +  KR+ RYL    D GI + G + G   L GF DAD+A D ++R+ST+GY F L+ G     I W ++++
Sbjct:  293 ITTIRLILAIACILDLELDNMDVETAYLQSDLEEKVYVKQPIGYEQYGLNGEELVCRLRKSLYGLKQSGRNWHKKIDGWFRGYGFHPSSADPCLYVKFGSSGEM-LVIVLYVDDLIITSNSREMVDKFKQAISREFSMKDLKELDWILGMAIKRNREKRVMEISQTAYIDMVLNKFGMADCRPVLTPMEGTL-TKMDGKDAKPDNEYMKLVGSLLYAALVTRPDIAFAVQSLGKHLQGSNEEHWIAAKRVLRYLKGTRDVGIRYTGNTTGSFTLVGFADADYAGDKDNRRSTSGYAFTLSHGDDINTIDWKAKQQ 605          
BLAST of mRNA_H-paniculata_contig20365.5275.1 vs. uniprot
Match: H3GB98_PHYRM (Reverse transcriptase Ty1/copia-type domain-containing protein n=3 Tax=Phytophthora ramorum TaxID=164328 RepID=H3GB98_PHYRM)

HSP 1 Score: 169 bits (429), Expect = 2.730e-46
Identity = 99/297 (33.33%), Postives = 157/297 (52.86%), Query Frame = 0
Query:   21 MGVDATYLNAPVEEELFVKPPPEFSPFSRDKP-FVRRLRKSLYGLKQSGRNWNNTLDDFLVGIGLARSTTDSCLYFSRDDGGETNLLVVVYVDDLVIAGRREKVDEF-KHNISQHFRMKDLGSLSRMLGIEVRHDRPNGPMTISQGSYIREVLKIYGFDEGRGVPTPVEGKVKT---------RHPSRPTSPPNRSHL-ELTY-------------------------------KRLFRYLSTVPDFGIMFGGKSNGHGLEGFVDADWAEDVEDRKSTTGYVFKLNGGAIRWCSRKR 274
            M V   +LN  ++E++++  P  +     D P  V +L++SLYGLKQS R WN T+DDF++ +G  +  +D C+Y  RD  G+  + V +YVDDLV+A   +++ E  KH +S+ F M DLG L   LG+E+++ R +G +T+ Q  +++ +L  +G  + + V TP +  +K          +H     + P RS +  L Y                               KR+ RYL   P  G+ F  + +  G+ G+ DADWA D+E R+ST+GY F +NGG I W S+K+
Sbjct:    1 MDVKTAFLNGVLDEDIYMAQPDGY--VDEDHPDHVCKLKRSLYGLKQSPRMWNQTIDDFMLKLGFKKCESDHCVYLKRD--GQDMIFVALYVDDLVLASSNDELLELTKHALSKRFEMTDLGELEYFLGMEIKNTRDSGKVTVRQTKFLKSILTKFGMQDSKPVKTPQDPGLKLTKNMCEGGCQHEDTMKNVPYRSVVGALMYLMVATRPDLAAAVGVLSQFSADPCPTHWQALKRVLRYLQATPTHGLEFS-REDSLGMCGYSDADWAGDIESRRSTSGYAFMMNGGCISWRSKKQ 292          
BLAST of mRNA_H-paniculata_contig20365.5275.1 vs. uniprot
Match: A0A438GDP4_VITVI (Retrovirus-related Pol polyprotein from transposon TNT 1-94 n=2 Tax=Vitis vinifera TaxID=29760 RepID=A0A438GDP4_VITVI)

HSP 1 Score: 176 bits (445), Expect = 3.280e-46
Identity = 100/282 (35.46%), Postives = 158/282 (56.03%), Query Frame = 0
Query:    1 MSTLCTVFSLVTERDFELEGMGVDATYLNAPVEEELFVKPPPEFSPFSRDKPFVRRLRKSLYGLKQSGRNWNNTLDDFLVGIGLARSTTDSCLYFSRDDGGETNLLVVVYVDDLVIAGRR-EKVDEFKHNISQHFRMKDLGSLSRMLGIEVRHDRPNGPMTISQGSYIREVLKIYGFDEGRGVPTPVEGKVKTRHPSRPTSPPNRSHL-ELTYKR-----LFRYLSTVPDF----GIMFGGKSNGHGLEGFVDADWAEDVEDRKSTTGYVFKLNGGAIRWCS 271
            MST+  V  +V   +  LE + V   +L+  +EE+L++  P  F    ++   V +LRKSLYGLKQ+ R W    D+F+  IG  R   D C YF   D   + +++++YVDD++IAG   EK++  K  +S+ F MKDLG+  ++LG+ +  D+ NG + +SQ  Y+++VL  +  +E + V TP+    K      P +   R H+ ++ Y       ++  + T PD     G++    S    L+G+VDAD+A D++ RKSTTG+VF L G AI W S
Sbjct:  690 MSTIRLVLGMVAAENLHLEQLDVKTAFLHGDLEEDLYMIQPEGFIVQGQEN-LVCKLRKSLYGLKQAPRQWYKKFDNFMHRIGFKRCEADHCCYFKSFDN--SYIILLLYVDDMLIAGSDIEKINNLKKQLSKQFAMKDLGAAKQILGMRIIRDKANGTLKLSQSEYVKKVLSRFNMNEAKPVSTPLGSHFKLSKEQSPKTEEERDHMSKVPYASAIGSLMYAMVCTRPDIAHAVGVVSRFMSASLKLQGYVDADFAGDIDSRKSTTGFVFTLGGTAISWTS 968          
BLAST of mRNA_H-paniculata_contig20365.5275.1 vs. uniprot
Match: A0A7D9HZ03_PARCT (Reverse transcriptase Ty1/copia-type domain-containing protein n=1 Tax=Paramuricea clavata TaxID=317549 RepID=A0A7D9HZ03_PARCT)

HSP 1 Score: 173 bits (438), Expect = 4.870e-46
Identity = 106/308 (34.42%), Postives = 170/308 (55.19%), Query Frame = 0
Query:    6 TVFSLVTERDFELEGMGVDATYLNAPVEEELFVKPPPEFSPFSRDKPFVRRLRKSLYGLKQSGRNWNNTLDDFLVGIGLARSTTDSCLYFSRDDGGETNLLVV-VYVDDLVIAGRR-EKVDEFKHNISQHFRMKDLGSLSRMLGIEVRHDRPNGPMTISQGSYIREVLKIYGFDEGRGVPTPVE--GKV-----------KTRHPS------------RP------------TSPPNRSHLELTYKRLFRYLSTVPDFGIMFGGKSNGHGLEGFVDADWAEDVEDRKSTTGYVFKLNGGAIRWCSRKR 274
            TV +L  +R  +L  M V A +LN  +E+E+++K P  F    ++     +L KSLYGLKQS R WN+ LD+ L  IG  ++ +D C+Y   +DG   N+ VV ++VDD+++AG+  EK+ + K +I++ F++KD+G L  +LG++V  +  +  + I Q +Y   ++K YG +  + V TPV+   K+           K  H S            RP            ++ P   H     KR+FRYL    ++G+++   +N   + GF DADWA D+ DRKST+GY F++NG A+ W S+K+
Sbjct:  241 TVIALSVQRGLKLHQMDVTAAFLNGELEDEVYMKQPEGFEVKGKEH-LACKLNKSLYGLKQSSRCWNSVLDEHLKSIGFTQTESDPCIYVKEEDG---NIFVVAIHVDDIILAGKTDEKIAKVKESIAERFQVKDMGELKYILGLQVIQE--DAKVWIGQPTYTASIIKKYGMENCKPVETPVDLSSKLVSAMEDSELFNKEEHQSAVGSLLYLSSATRPDITFAVNNVAKFSANPTNEHWTAV-KRIFRYLKGTVNYGLLYSENANPDCV-GFSDADWAGDLNDRKSTSGYTFQINGAAVSWRSKKQ 540          
The following BLAST results are available for this feature:
BLAST of mRNA_H-paniculata_contig20365.5275.1 vs. uniprot
Analysis Date: 2022-09-16 (Diamond blastp: OGS1.0 vs UniRef90)
Total hits: 25
Match NameE-valueIdentityDescription
W7TCB8_9STRA5.500e-4936.84Gag-pol polyprotein n=3 Tax=Nannochloropsis gadita... [more]
W7TJ26_9STRA3.360e-4836.19Gag-pol polyprotein n=2 Tax=Nannochloropsis gadita... [more]
A0A8D8HJI9_CULPI4.420e-4733.33Copia protein n=1 Tax=Culex pipiens TaxID=7175 Rep... [more]
A0A2N9J6A9_FAGSY9.870e-4736.52Integrase catalytic domain-containing protein n=1 ... [more]
A0A5D6YB57_9STRA1.100e-4633.87Reverse transcriptase Ty1/copia-type domain-contai... [more]
A0A438E4C5_VITVI1.850e-4634.40Retrovirus-related Pol polyprotein from transposon... [more]
W7TIM1_9STRA2.210e-4635.87Gag-pol polyprotein n=1 Tax=Nannochloropsis gadita... [more]
H3GB98_PHYRM2.730e-4633.33Reverse transcriptase Ty1/copia-type domain-contai... [more]
A0A438GDP4_VITVI3.280e-4635.46Retrovirus-related Pol polyprotein from transposon... [more]
A0A7D9HZ03_PARCT4.870e-4634.42Reverse transcriptase Ty1/copia-type domain-contai... [more]

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InterPro
Analysis Name: InterProScan on OGS1.0
Date Performed: 2022-09-29
IPR TermIPR DescriptionSourceSource TermSource DescriptionAlignment
IPR013103Reverse transcriptase, RNA-dependent DNA polymerasePFAMPF07727RVT_2coord: 10..186
e-value: 6.2E-39
score: 134.1
NoneNo IPR availablePANTHERPTHR11439:SF280coord: 28..192
NoneNo IPR availableSUPERFAMILY56672DNA/RNA polymerasescoord: 54..152
IPR039537Retrotransposon Ty1/copia-likePANTHERPTHR11439GAG-POL-RELATED RETROTRANSPOSONcoord: 28..192

Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
H-paniculata_contig20365contigH-paniculata_contig20365:291..1297 +
Analyses
This polypeptide is derived from or has results from the following analyses
Analysis NameDate Performed
InterProScan on OGS1.02022-09-29
Diamond blastp: OGS1.0 vs UniRef902022-09-16
OGS1.0 of Halopteris paniculata Hal_grac_a_UBK monoicous2021-02-24
Relationships

This polypeptide derives from the following mRNA feature(s):

Feature NameUnique NameSpeciesTypePosition
mRNA_H-paniculata_contig20365.5275.1mRNA_H-paniculata_contig20365.5275.1Halopteris paniculata Hal_grac_a_UBK monoicousmRNAH-paniculata_contig20365 9..1619 +


Sequences
The following sequences are available for this feature:

polypeptide sequence

>prot_H-paniculata_contig20365.5275.1 ID=prot_H-paniculata_contig20365.5275.1|Name=mRNA_H-paniculata_contig20365.5275.1|organism=Halopteris paniculata Hal_grac_a_UBK monoicous|type=polypeptide|length=275bp
MSTLCTVFSLVTERDFELEGMGVDATYLNAPVEEELFVKPPPEFSPFSRD
KPFVRRLRKSLYGLKQSGRNWNNTLDDFLVGIGLARSTTDSCLYFSRDDG
GETNLLVVVYVDDLVIAGRREKVDEFKHNISQHFRMKDLGSLSRMLGIEV
RHDRPNGPMTISQGSYIREVLKIYGFDEGRGVPTPVEGKVKTRHPSRPTS
PPNRSHLELTYKRLFRYLSTVPDFGIMFGGKSNGHGLEGFVDADWAEDVE
DRKSTTGYVFKLNGGAIRWCSRKR*
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Annotated Terms
The following terms have been associated with this polypeptide:
Vocabulary: INTERPRO
TermDefinition
IPR013103RVT_2
IPR039537Retrotran_Ty1/copia-like