mRNA_H-paniculata_contig20365.5275.1 (mRNA) Halopteris paniculata Hal_grac_a_UBK monoicous

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_H-paniculata_contig20365.5275.1
Unique NamemRNA_H-paniculata_contig20365.5275.1
TypemRNA
OrganismHalopteris paniculata Hal_grac_a_UBK monoicous (Halopteris paniculata Hal_grac_a_UBK monoicous)
Homology
BLAST of mRNA_H-paniculata_contig20365.5275.1 vs. uniprot
Match: A0A7D9JFU5_PARCT (Reverse transcriptase Ty1/copia-type domain-containing protein (Fragment) n=1 Tax=Paramuricea clavata TaxID=317549 RepID=A0A7D9JFU5_PARCT)

HSP 1 Score: 286 bits (732), Expect = 2.610e-87
Identity = 172/475 (36.21%), Postives = 259/475 (54.53%), Query Frame = 1
Query:    1 EPKSAAEALKGPEAEKWRAAMEEEWGALVKNGTWESEDPGRLPAGRKAIRTKWIIKRKLKEDGSVARYKA*LVAQGFLQVEGEDFFETSAPVARMSTLCTVFSLVTERDFELEGMGVDATYLNAPVEEELFVKPPPEFSPFSRDKP-FVRRLRKSLYGLKQSGRNWNNTLDDFLVGIGLARSTTDSCLY---FSRDDGGETNLLVVVYVDDLV-IAGRREKVDEFKHNISQHFRMKDLGSLSRMLGIEVRHDRPNGPMTISQGSYIREVLKIYGFDEGRGVPTPVEGKVKTR--------------------HPSRPTSP---------------PNRSHLELTYKRLFRYLSTVPDFGIMF----GGKSNGHGLEGFVDADWAEDVEDRKSTTGYVFKLNGGAIRWCSRKR*LVTWCSTEAEYVVAGEARKETVYLRELLGSIGFGCRGSTTLFEDNKSAINLSKGSGAHCRTK 1293
            EP+S +EAL G  A KW+ A++EE+ +L+ N TWE   P   P G   I +KW++K K   DG+V R+KA LVAQG+ Q  G ++ E  +PVAR S++ T+ +L  + + E+  M V   +LN  +E ++++  P  F    ++ P +V +L+KSLYGLKQS R WN TLD FL   G  +S  D+C+Y      D+G  + +++ VYVDD++ I+     ++  K  + +HF M D G +  +LG+ ++ DR    + ISQ  Y+  VL  +G    + + TP+E     R                    + S  T P               P++ H     KRL RY+    +FG+ F        NG  L G+ DA+WA DV+ R+ST+GYVFK+    + WCS+K+  VT  +TEAEYV   +A +E +++R LL  IG      TT++EDN+ AI +SK +  H RTK
Sbjct:   13 EPQSISEALNGANASKWKQALKEEYNSLISNETWELVPP---PEGCNVIGSKWVMKIKRDADGNVDRHKARLVAQGYSQTPGINYEEVFSPVARHSSIRTLLALANKHNLEIHQMDVKTAFLNGYIEHDIYMSQPDGF--VDQEHPEYVCKLKKSLYGLKQSARCWNQTLDSFLTKNGYRKSNADNCIYVKSIKNDNGFISFVILAVYVDDIIPISNDINMLNTEKDLLCKHFEMTDQGEIHFILGMTIKRDRETKTLFISQQRYLESVLDRFGMANCKPISTPLETTYHKRTEEEEGFDKNLYQQAIGRLTYISTATRPDISAAVSILSSYMSNPSKEHWN-GVKRLLRYIKGTLNFGLKFTTSENDDENGDELYGYSDANWAGDVDSRRSTSGYVFKVANSTVSWCSKKQASVTKSTTEAEYVALSQATQEAIWMRRLLSDIGCKSEEPTTMYEDNQGAIEISKNARFHNRTK 481          
BLAST of mRNA_H-paniculata_contig20365.5275.1 vs. uniprot
Match: A0A7D9HZ03_PARCT (Reverse transcriptase Ty1/copia-type domain-containing protein n=1 Tax=Paramuricea clavata TaxID=317549 RepID=A0A7D9HZ03_PARCT)

HSP 1 Score: 286 bits (732), Expect = 5.710e-86
Identity = 173/470 (36.81%), Postives = 266/470 (56.60%), Query Frame = 1
Query:    1 EPKSAAEALKGPEAEKWRAAMEEEWGALVKNGTWESEDPGRLPAGRKAIRTKWIIKRKLKEDGSVARYKA*LVAQGFLQVEGEDFFETSAPVARMSTLCTVFSLVTERDFELEGMGVDATYLNAPVEEELFVKPPPEFSPFSRDKPFVRRLRKSLYGLKQSGRNWNNTLDDFLVGIGLARSTTDSCLYFSRDDGGETNLLVV-VYVDDLVIAGRR-EKVDEFKHNISQHFRMKDLGSLSRMLGIEVRHDRPNGPMTISQGSYIREVLKIYGFDEGRGVPTPVE--GKV-----------KTRHPS------------RP------------TSPPNRSHLELTYKRLFRYLSTVPDFGIMFGGKSNGHGLEGFVDADWAEDVEDRKSTTGYVFKLNGGAIRWCSRKR*LVTWCSTEAEYVVAGEARKETVYLRELLGSIGFGCRGSTTLFEDNKSAINLSKGSGAHCRTK 1293
            EP + +EAL GP AE+W  AM++E  +L ++  WE  +   LP  RKA+  KW+ K K   DGS+ R+KA LVAQGF Q  G D+ ET +PV R  ++ TV +L  +R  +L  M V A +LN  +E+E+++K P  F    ++     +L KSLYGLKQS R WN+ LD+ L  IG  ++ +D C+Y   +DG   N+ VV ++VDD+++AG+  EK+ + K +I++ F++KD+G L  +LG++V  +  +  + I Q +Y   ++K YG +  + V TPV+   K+           K  H S            RP            ++ P   H     KR+FRYL    ++G+++   +N   + GF DADWA D+ DRKST+GY F++NG A+ W S+K+  V   +  AEYV    A +E +++R+LL  +        T++EDN+SAI +SK    H R+K
Sbjct:  145 EPTTVSEALCGPNAERWHEAMQQEMDSLQEHDVWELTE---LPKDRKAVGCKWVFKVKHNADGSIERHKARLVAQGFSQRFGVDYDETFSPVVRFESIRTVIALSVQRGLKLHQMDVTAAFLNGELEDEVYMKQPEGFEVKGKEH-LACKLNKSLYGLKQSSRCWNSVLDEHLKSIGFTQTESDPCIYVKEEDG---NIFVVAIHVDDIILAGKTDEKIAKVKESIAERFQVKDMGELKYILGLQVIQE--DAKVWIGQPTYTASIIKKYGMENCKPVETPVDLSSKLVSAMEDSELFNKEEHQSAVGSLLYLSSATRPDITFAVNNVAKFSANPTNEHWTAV-KRIFRYLKGTVNYGLLYSENANPDCV-GFSDADWAGDLNDRKSTSGYTFQINGAAVSWRSKKQTCVALSTAAAEYVALSAAAQEALWMRQLLTDLNVNIDEPMTIYEDNQSAIAMSKNPQFHGRSK 603          
BLAST of mRNA_H-paniculata_contig20365.5275.1 vs. uniprot
Match: A0A6S7H8C9_PARCT (Retrovirus-related Pol poly from transposon TNT 1-94 n=1 Tax=Paramuricea clavata TaxID=317549 RepID=A0A6S7H8C9_PARCT)

HSP 1 Score: 285 bits (730), Expect = 9.420e-84
Identity = 172/475 (36.21%), Postives = 259/475 (54.53%), Query Frame = 1
Query:    1 EPKSAAEALKGPEAEKWRAAMEEEWGALVKNGTWESEDPGRLPAGRKAIRTKWIIKRKLKEDGSVARYKA*LVAQGFLQVEGEDFFETSAPVARMSTLCTVFSLVTERDFELEGMGVDATYLNAPVEEELFVKPPPEFSPFSRDKP-FVRRLRKSLYGLKQSGRNWNNTLDDFLVGIGLARSTTDSCLY---FSRDDGGETNLLVVVYVDDLV-IAGRREKVDEFKHNISQHFRMKDLGSLSRMLGIEVRHDRPNGPMTISQGSYIREVLKIYGFDEGRGVPTPVEGKVKTR--------------------HPSRPTSP---------------PNRSHLELTYKRLFRYLSTVPDFGIMF----GGKSNGHGLEGFVDADWAEDVEDRKSTTGYVFKLNGGAIRWCSRKR*LVTWCSTEAEYVVAGEARKETVYLRELLGSIGFGCRGSTTLFEDNKSAINLSKGSGAHCRTK 1293
            EP+S +EAL G  A KW+ A++EE+ +L+ N TWE   P   P G   I +KW++K K   DG+V R+KA LVAQG+ Q  G ++ E  +PVAR S++ T+ +L  + + E+  M V   +LN  +E ++++  P  F    ++ P +V +L+KSLYGLKQS R WN TLD FL   G  +S  D+C+Y    + D+G  + +++ VYVDD++ I+     ++  K  + +HF M D G +  +LG+ ++ DR    + ISQ  Y+  VL  +G    + + TP+E     R                    + S  T P               P++ H     KRL RY+    +FG+ F        NG  L G+ DA+WA DV+ R+ST+GYVFK+    + WCS+K+  VT  +TEAEYV   +A +E +++R LL  IG      TT++EDN+ AI  SK +  H RTK
Sbjct:  361 EPQSISEALNGANASKWKQALKEEYNSLISNETWELVPP---PEGCNVIGSKWVMKIKRDADGNVDRHKARLVAQGYSQTPGINYEEVFSPVARHSSIRTLLALANKHNLEIHQMDVKTAFLNGYIEHDIYMSQPDGF--VDQEHPEYVCKLKKSLYGLKQSARCWNQTLDSFLTKNGYRKSNADNCIYVKSITNDNGFISFVILAVYVDDIIPISNDINMLNAEKDLLCKHFEMTDQGEIHFILGMTIKRDRETKTLFISQQKYLESVLDRFGMANCKPISTPLETTYHKRTEEEEGFDKNLYQQAIGCLTYISTATRPDISAAVSILSSYMSNPSKEHRN-GVKRLLRYIKGTLNFGLKFTTSENDDENGDKLYGYSDANWAGDVDSRRSTSGYVFKVANSTVSWCSKKQASVTKSTTEAEYVALSQATQEAIWMRRLLSDIGCKSEEPTTMYEDNQGAIESSKNARFHNRTK 829          
BLAST of mRNA_H-paniculata_contig20365.5275.1 vs. uniprot
Match: A0A7D9DPP1_PARCT (Retrovirus-related Pol poly from transposon TNT 1-94 n=4 Tax=Paramuricea clavata TaxID=317549 RepID=A0A7D9DPP1_PARCT)

HSP 1 Score: 288 bits (736), Expect = 1.100e-82
Identity = 173/475 (36.42%), Postives = 259/475 (54.53%), Query Frame = 1
Query:    1 EPKSAAEALKGPEAEKWRAAMEEEWGALVKNGTWESEDPGRLPAGRKAIRTKWIIKRKLKEDGSVARYKA*LVAQGFLQVEGEDFFETSAPVARMSTLCTVFSLVTERDFELEGMGVDATYLNAPVEEELFVKPPPEFSPFSRDKP-FVRRLRKSLYGLKQSGRNWNNTLDDFLVGIGLARSTTDSCLY---FSRDDGGETNLLVVVYVDDLV-IAGRREKVDEFKHNISQHFRMKDLGSLSRMLGIEVRHDRPNGPMTISQGSYIREVLKIYGFDEGRGVPTPVEGKVKTR--------------------HPSRPTSP---------------PNRSHLELTYKRLFRYLSTVPDFGIMF----GGKSNGHGLEGFVDADWAEDVEDRKSTTGYVFKLNGGAIRWCSRKR*LVTWCSTEAEYVVAGEARKETVYLRELLGSIGFGCRGSTTLFEDNKSAINLSKGSGAHCRTK 1293
            EP+S +EAL G  A KW+ A++EE+ +L+ N TWE   P   P G   I +KW++K K   DG+V R+KA LVAQG+ Q  G D+ E  +PVAR S++ T+ +L  + + E+  M V   +LN  +E ++++  P  F    ++ P +V +L+KSLYGLKQS R WN TLD FL   G  +S  D+C+Y      D+G  + +++ VYVDD++ I+     ++  K  + +HF M D G +  +LG+ ++ DR    + ISQ  Y+  VL  +G    + + TP+E     R                    + S  T P               P++ H     KRL RY+    +FG+ F        NG  L G+ DA+WA DV+ R+ST+GYVFK+    + WCS+K+  VT  +TEAEYV   +A +E +++R LL  IG      TT++EDN+ AI +SK +  H RTK
Sbjct:  758 EPQSISEALNGANASKWKQALKEEYNSLISNETWELVPP---PEGCNVIGSKWVMKIKRDADGNVDRHKARLVAQGYSQTPGIDYEEVFSPVARHSSIRTLLALANKHNLEIHQMDVKTAFLNGYIEHDIYMSQPDGF--VDQEHPEYVCKLKKSLYGLKQSARCWNQTLDSFLTKNGYRKSNADNCIYVKSIKNDNGFISFVILAVYVDDIIPISNDINMLNAEKDLLCKHFEMTDQGEIHFILGMTIKRDRETKTLFISQQKYLESVLDRFGMANCKPISTPLETTYHKRTEEEEGFDKNLYQQAIGCLTYISTATRPDISAAVSILSSYMSNPSKEHWN-GVKRLLRYIKGTLNFGLKFTTSENDDENGDELYGYSDANWAGDVDSRRSTSGYVFKVANSTVSWCSKKQASVTKSTTEAEYVALSQATQEAIWMRGLLSDIGCKSEEPTTMYEDNQGAIEISKNARFHNRTK 1226          
BLAST of mRNA_H-paniculata_contig20365.5275.1 vs. uniprot
Match: A0A6S7HEL0_PARCT (Retrovirus-related Pol poly from transposon TNT 1-94 (Fragment) n=4 Tax=Paramuricea clavata TaxID=317549 RepID=A0A6S7HEL0_PARCT)

HSP 1 Score: 287 bits (735), Expect = 1.440e-82
Identity = 171/469 (36.46%), Postives = 261/469 (55.65%), Query Frame = 1
Query:    1 EPKSAAEALKGPEAEKWRAAMEEEWGALVKNGTWESEDPGRLPAGRKAIRTKWIIKRKLKEDGSVARYKA*LVAQGFLQVEGEDFFETSAPVARMSTLCTVFSLVTERDFELEGMGVDATYLNAPVEEELFVKPPPEFSPFSRDKPFVRRLRKSLYGLKQSGRNWNNTLDDFLVGIGLARSTTDSCLYFSRDDGGETNLLVVVYVDDLVIAGRR-EKVDEFKHNISQHFRMKDLGSLSRMLGIEVRHDRPNGPMTISQGSYIREVLKIYGFDEGRGVPTPVEGKVKT----------------------RHPSRPTSP---------------PNRSHLELTYKRLFRYLSTVPDFGIMFGGKSNGHGLEGFVDADWAEDVEDRKSTTGYVFKLNGGAIRWCSRKR*LVTWCSTEAEYVVAGEARKETVYLRELLGSIGFGCRGSTTLFEDNKSAINLSKGSGAHCRTK 1293
            EP + +EAL GP AE+W  AM++E  +L ++  WE  +   LP  RKA+  KW+ K K   DGS+ R+KA LVAQGF Q  G D+ ET +PV R   + TV +L  +R  +L  M V A +LN  +E+E+++K P  F    ++   V +L KSLYGLKQS R WN+ LD+ L  IG  ++ +D C+Y   +DG     +V ++VDD+++AG+  EK+ + K +I++ F++KD+G L  +LG++V  +  +  + I Q +Y   ++K YG +  + V TPV+   K                        + S  T P               P   H     KR+FRYL    ++G+++   +N   + GF DADWA D+ DRKST+GY F++NG A+ W S+K+  V   + EAEYV    A +E +++R+LL  +        T++EDN+SAI +SK    H R+K
Sbjct:  759 EPTTVSEALCGPNAERWHEAMQQEMDSLQEHDVWELTE---LPKDRKAVGCKWVFKVKHNADGSIERHKARLVAQGFSQRFGVDYDETFSPVVRFEKIRTVIALSVQRGLKLHQMDVTAAFLNGELEDEVYMKQPEGFEVKGKEH-LVCKLNKSLYGLKQSSRCWNSVLDEHLKSIGFTQTESDPCIYVKEEDGDI--FVVAIHVDDIILAGKTDEKIAKVKESIAERFQVKDMGELKYILGLQVIQE--DAKVWIGQPTYTASIIKKYGMENCKPVETPVDLSSKLVSAIEDSELFNKEEYQSAVGSLLYLSSATRPDITFAVNNVAKFSANPTNEHWTAV-KRIFRYLKGTVNYGLLYSENANPDCV-GFSDADWAGDLNDRKSTSGYTFQINGAAVSWRSKKQTCVALSTAEAEYVALSAAAQEALWMRQLLTDLNVNIDEPMTIYEDNQSAIAMSKNPQFHGRSK 1217          
BLAST of mRNA_H-paniculata_contig20365.5275.1 vs. uniprot
Match: A0A5D6YB57_9STRA (Reverse transcriptase Ty1/copia-type domain-containing protein (Fragment) n=1 Tax=Pythium brassicum TaxID=1485010 RepID=A0A5D6YB57_9STRA)

HSP 1 Score: 270 bits (691), Expect = 2.120e-82
Identity = 162/435 (37.24%), Postives = 233/435 (53.56%), Query Frame = 1
Query:   25 LKGPEAEKWRAAMEEEWGALVKNGTWESEDPGRLPAGRKAIRTKWIIKRKLKEDGSVARYKA*LVAQGFLQVEGEDFFETSAPVARMSTLCTVFSLVTERDFELEGMGVDATYLNAPVEEELFVKPPPEFSPFSRDKPFVRRLRKSLYGLKQSGRNWNNTLDDFLVGIGLARSTTDSCLYFSRDDGGETNLLVVVYVDDLVIA-GRREKVDEFKHNISQHFRMKDLGSLSRMLGIEVRHDRPNGPMTISQGSYIREVLKIYGFDEGRGVPTPVEGKVKT---------RHPSRPTSPPNRSHLELTY--------------------------------KRLFRYLSTVPDFGIMFGGKSNGHGLEGFVDADWAEDVEDRKSTTGYVFKLNGGAIRWCSRKR*LVTWCSTEAEYVVAGEARKETVYLRELLGSIG 1203
            ++  +A KW+ A E E+ +L KN TWE      LP GRKAI +KW+ K K   +G + RYKA LVA+GFLQ  G DF ET APVA+ +++  + S+  +    L  M V   +LN  +EEE+++K P  F   ++    V +L+++LYGLKQS R WN T+D+F+  IG  +  TD C+Y  RDD  +  + VV+YVDDL++A    + +   K  +S+ F M DLG L   LG+EV  D  +G +++ Q  ++  VL  +G  + + V TP +  +K          +H       P RS +                                    KR+ RYL   P  GI F G  +G  L G+ DADWA D+E R+ST+GYVF LNGG I W S+K+  V   STEAEY+   EA +E V+L+  +  +G
Sbjct:    1 MESSDASKWKEACESEFESLCKNKTWELVP---LPRGRKAISSKWVFKVKETVEGLIERYKARLVAKGFLQKYGVDFEETFAPVAKFASIRIILSIAAQYKLVLHQMDVKTAFLNGLLEEEIYMKQPNGFVD-AKYPDHVCKLKRALYGLKQSPRMWNQTIDEFMRKIGFTKCETDHCVYVKRDD--KAMIFVVLYVDDLILACNDTDLLAATKRALSERFEMSDLGELKYCLGMEVERDDKSGDVSMRQTKFLHSVLAKFGMQDCKPVKTPQDPGLKLTKAMCEGGCKHDDTMQGVPYRSAVGAVMYLMVGTRPDLAAAVGVLSQFAADPCPTHWQALKRVLRYLQATPTHGIRFAGSGDGE-LIGYSDADWAGDIETRRSTSGYVFVLNGGCITWRSKKQRTVALSSTEAEYMALSEATQEAVWLKAFMRELG 428          
BLAST of mRNA_H-paniculata_contig20365.5275.1 vs. uniprot
Match: A0A7M6DPI8_9CNID (Uncharacterized protein n=1 Tax=Clytia hemisphaerica TaxID=252671 RepID=A0A7M6DPI8_9CNID)

HSP 1 Score: 286 bits (731), Expect = 5.860e-82
Identity = 169/473 (35.73%), Postives = 259/473 (54.76%), Query Frame = 1
Query:    1 EPKSAAEALKGPEAEKWRAAMEEEWGALVKNGTWESEDPGRLPAGRKAIRTKWIIKRKLKEDGSVARYKA*LVAQGFLQVEGEDFFETSAPVARMSTLCTVFSLVTERDFELEGMGVDATYLNAPVEEELFVKPPPEFSPFSRDKPFVR-RLRKSLYGLKQSGRNWNNTLDDFLVGIGLARSTTDSCLYFSRDDGGETN--LLVVVYVDDLVIAGRREKV-DEFKHNISQHFRMKDLGSLSRMLGIEVRHDRPNGPMTISQGSYIREVLKIYGFDEGRGVPTPVEGKVK-----------------------------TRHP--------SRPTSPPNRSHLELTYKRLFRYLSTVPDFGIMFGGKSNGHGL-EGFVDADWAEDVEDRKSTTGYVFKLNGGAIRWCSRKR*LVTWCSTEAEYVVAGEARKETVYLRELLGSIGFGCRGSTTLFEDNKSAINLSKGSGAHCRTK 1293
            EP +  EAL  P AE W+ A++ E+ +L++N TW+  +   +P  +  + +KW+ K K   DG + R KA LVAQG+ Q  G D+ +  APVA+ +++ +V ++  E D EL  M V   +LN  +EE++F+K P  F   +RD P +  +L+KS+YGLKQS R WN  +D+FL   G  R+  D C+Y  +   G+ +  L+V VYVDDL+IA    ++  E K  + + F M+D   +  +LG++V+ DR N  +TI Q +++  VL  +  +E + V TP+E  +K                             TR          S+  S P + H  +  KR+ RYL    D+G+++ G  +G  L  GF DADWA D++ RKST+GYVFK+    + W S+++ +V    TEAEYV   +A +E ++LR L   + F     T +FEDN+ AI L+K    H RTK
Sbjct:  775 EPTTIEEALSSPNAELWKDAIQNEYDSLIENETWKLVE---MPPDKNLVGSKWVFKHKRGADGKIQRCKARLVAQGYSQKSGIDYNDVFAPVAKYNSIRSVLAITNELDLELHQMDVKTAFLNGDLEEDIFMKQPEGF--INRDNPNMACKLQKSIYGLKQSARCWNEKMDEFLKESGFTRNDADPCIYHKQITKGDKSFTLIVAVYVDDLLIACNNIQILREQKQKLGERFEMEDKSEVHFILGMQVKRDRKNRRLTIDQNAFLSSVLNRFNMNECKPVATPLEPSMKFEKLADDEEIVKLKDYQSAIGCLTYASIGTRPDISAAVGVLSQHMSKPGKQHW-IGVKRVLRYLKGTLDYGLIYEGSESGDILLHGFADADWAGDIDTRKSTSGYVFKVGNSTVSWKSKRQSIVALSKTEAEYVALSQATQEVIWLRTLFKGMDFEQTDPTKMFEDNQGAIELAKNQPNHSRTK 1241          
BLAST of mRNA_H-paniculata_contig20365.5275.1 vs. uniprot
Match: A0A6S7JEY7_PARCT (Reverse transcriptase Ty1/copia-type domain-containing protein (Fragment) n=2 Tax=Paramuricea clavata TaxID=317549 RepID=A0A6S7JEY7_PARCT)

HSP 1 Score: 274 bits (701), Expect = 1.470e-81
Identity = 163/469 (34.75%), Postives = 255/469 (54.37%), Query Frame = 1
Query:    1 EPKSAAEALKGPEAEKWRAAMEEEWGALVKNGTWESEDPGRLPAGRKAIRTKWIIKRKLKEDGSVARYKA*LVAQGFLQVEGEDFFETSAPVARMSTLCTVFSLVTERDFELEGMGVDATYLNAPVEEELFVKPPPEFSPFSRDKPFVRRLRKSLYGLKQSGRNWNNTLDDFLVGIGLARSTTDSCLYFSRDDGGETNLLVVVYVDDLVIAGRRE-KVDEFKHNISQHFRMKDLGSLSRMLGIEVRHDRPNGPMTISQGSYIREVLKIYGFDEGRGVPTPVEGKVKTR----------------------HPSRPTSP---------------PNRSHLELTYKRLFRYLSTVPDFGIMFGGKSNGHGLEGFVDADWAEDVEDRKSTTGYVFKLNGGAIRWCSRKR*LVTWCSTEAEYVVAGEARKETVYLRELLGSIGFGCRGSTTLFEDNKSAINLSKGSGAHCRTK 1293
            EP++  EAL  P+  KW  AME+E  +L  N  W   +   LP  RKA+ +KW+ + K   DG+V  +KA LVAQGF Q  G+D+ ET +PVAR  ++ TV +L  +   +L  M V   +LN  ++EE+++K P  F    ++   V RLR+S+ GLKQS R WN+ LD  L  +G  ++T D C+Y  +++GGE   ++ VYVDD+++AG+ + K++E K  +++ F+MKD+G     LG++V     +  + I Q +Y + VL+ +G +  +   TPV    K +                      + S  T P               P   H  +  KR+ RYL+   D G+++ G        G+ DADWA D++DRKST+GYVF+++  AI W S+K+  V   + EAEY+    A +E V+L++LL  +     G   + EDN++AI ++K +  H R K
Sbjct:  129 EPRTVKEALSSPQKTKWVKAMEKEMESLKTNEVWNLVE---LPENRKAVGSKWVFRVKTDADGTVETHKARLVAQGFSQTFGDDYDETFSPVARFESVRTVIALAAQHGLKLHQMDVTTAFLNGDLKEEVYMKQPEGFIDKGKEH-LVCRLRRSICGLKQSPRCWNSVLDRKLKNMGFVQTTGDPCIYV-KEEGGEI-FIIAVYVDDILLAGKNDQKINEVKQALAEQFQMKDMGQRHYFLGVKVIQKPDSKEIWIGQEAYTKSVLERFGMESSKPASTPVNPGTKLKKAADDSQRVDQVNYQCAVGHLLYLSTKTRPDIAYAVSDVARFSAHPTEEHW-IAVKRIMRYLNGTRDMGLLYDGSKTTTSCVGYSDADWAGDLDDRKSTSGYVFQISNAAISWRSKKQSCVALSTAEAEYMTLASATQEAVWLQQLLSDLKSKPTGPMLILEDNQAAICMAKNAQYHGRAK 590          
BLAST of mRNA_H-paniculata_contig20365.5275.1 vs. uniprot
Match: A0A7D9LDA1_PARCT (Reverse transcriptase Ty1/copia-type domain-containing protein (Fragment) n=1 Tax=Paramuricea clavata TaxID=317549 RepID=A0A7D9LDA1_PARCT)

HSP 1 Score: 268 bits (686), Expect = 8.740e-81
Identity = 159/445 (35.73%), Postives = 258/445 (57.98%), Query Frame = 1
Query:    1 EPKSAAEALKGPEAEKWRAAMEEEWGALVKNGTWESEDPGRLPAGRKAIRTKWIIKRKLKEDGSVARYKA*LVAQGFLQVEGEDFFETSAPVARMSTLCTVFSLVTERDFELEGMGVDATYLNAPVEEELFVKPPPEFSPFSRDKP-FVRRLRKSLYGLKQSGRNWNNTLDDFLVGIGLARSTTDSCLYFS--RDDGGETNLLVV-VYVDDLV-IAGRREKVDEFKHNISQHFRMKDLGSLSRMLGIEVRHDRPNGPMTISQGSYIREVLKIYGFDEGRGVPTPVE---GKVKTRHPSRPTSPPN------RSHLELTYKRLFRYLSTVPDFGIMFGGKSNGHGLEGFVDADWAEDVEDRKSTTGYVFKLNGGAIRWCSRKR*LVTWCSTEAEYVVAGEARKETVYLRELLGSIGFGCRGSTTLFEDNKSAINLSKGSGAHCRTK 1293
            +P+S   AL G  A++W+ AM  E+ +L++N TWE   P      +  + ++W++K K KEDGS+ R+KA +VAQG+ Q +G D+ E  +PVAR ++L T+ +L  E D E+  M V   +LN  ++ +++++ P  F   + DKP ++ +L+KS+YGLKQS R WN+TLD +L   G  +S  D C+Y    + DGG  + +++ VYVDD++ ++   + ++  K  +S+ F+M D G +  +L + ++ DR     TISQ +Y+  VL  +G +  + V TP+E      KTR+ S   S         +SH  +  KR+ RYL    D+G+ +    N   L G+ D+DWA D+  R+ T+ YVF++    + W S+++  V   STEAEY+    A +E ++L+  L  +GF  R   T+FEDN+  I L+K +  H RTK
Sbjct:   18 DPESVQRALNGKYAKEWKDAMISEYSSLLENDTWELVPPC---DDQNVVGSRWVLKVKRKEDGSIDRFKARVVAQGYSQTKGADYDEVFSPVARHTSLRTLLALANEYDLEVHQMDVRTAFLNGDIDCDIYMQQPEGF--VNPDKPDYLCKLQKSIYGLKQSARCWNDTLDGYLKSRGYRKSGADGCIYVKSVKKDGGRISFVILGVYVDDIIPVSNDIQMLNSEKKALSERFKMDDRGEVHYLLRMLIKRDREARVTTISQRNYVERVLSKFGMESCKPVSTPLEPGTNDFKTRYLSCSGSTFTIYGKTWQSHW-IGVKRVLRYLKGTLDYGLKYSADENPT-LVGYSDSDWAGDINTRRLTSCYVFQVANSTVSWSSKRQRTVAKSSTEAEYIALSLATQEAIWLQRPLYDVGFKIRKPITIFEDNQGTIELAKNAKYHNRTK 455          
BLAST of mRNA_H-paniculata_contig20365.5275.1 vs. uniprot
Match: A0A182GIT5_AEDAL (Reverse transcriptase Ty1/copia-type domain-containing protein n=2 Tax=Aedes albopictus TaxID=7160 RepID=A0A182GIT5_AEDAL)

HSP 1 Score: 266 bits (681), Expect = 5.480e-80
Identity = 167/460 (36.30%), Postives = 243/460 (52.83%), Query Frame = 1
Query:   25 LKGPEAEKWRAAMEEEWGALVKNGTWESEDPGRLPAGRKAIRTKWIIKRKLKEDGSVARYKA*LVAQGFLQVEGEDFFETSAPVARMSTLCTVFSLVTERDFELEGMGVDATYLNAPVEEELFVKPPPEFSPFSRDKPFVRRLRKSLYGLKQSGRNWNNTLDDFLVGIGLARSTTDSCLYFSRDDGGETNLLVVVYVDDLVIA-GRREKVDEFKHNISQHFRMKDLGSLSRMLGIEVRHDRPNGPMTISQGSYIREVLKIYGFDEGRGVPTPVEGKVKTRHPSRPTSPPNRSHLELT-----------------------------------YKRLFRYLSTVPDFGIMFG-GKSNGHGLEGFVDADWAEDVEDRKSTTGYVFKLNGGAIRWCSRKR*LVTWCSTEAEYVVAGEARKETVYLRELLGSIGFGCRGSTTLFEDNKSAINLSKGSGAHCRTK 1293
            +KGPEAE W+AAM++E  +L +NGTW+  D   LP GRKA+  KWI KRKL EDG+V RYKA LVAQGF Q  G D+ E  APV R  T   + ++ ++R   ++   V   YLN  +EE +F++ PP +   +RD   V  L+KSLYGLKQ+G  WN   D  L  +   +S  D CLY  R+  G T L  V+YVDD+VIA    E+ +E    +++HF++  LG +S  LGI++  +      ++SQ +YI+++L+ +G ++ +    P++     +   +   P N  +  L                                     KR+ RYL    D  ++ G G+ N   LE +VDADWA DV+ RKS +GY+F   GG I W SRK+  V   STEAE+V    + +E +++  LL            + EDN+S I   +   A  R+K
Sbjct:    1 MKGPEAELWKAAMDDEMTSLRENGTWQLTD---LPPGRKAVGCKWIFKRKLDEDGNVVRYKARLVAQGFTQKFGTDYDEVFAPVVRQVTFRVLLTVASQRGMVVKHADVKTAYLNGELEESIFMRQPPGYEDENRDA--VCSLQKSLYGLKQAGYVWNKKFDQVLKRMKFQQSKNDPCLYVRRNGKGYTYL--VIYVDDMVIACNDDEEYEEIIKTLNRHFKVTSLGDISHFLGIKINRNEKG--FSLSQQTYIKQILEQFGMNQAKPSKYPLDPGHIQQKEEQVMLPNNHQYASLIGSLLYVAVNTRPDIAVSVSILGRSVSAPTQADWNEAKRILRYLKLTMDHELVLGQGERN---LEVYVDADWANDVKSRKSNSGYLFLFGGGPICWGSRKQTCVALSSTEAEFVALAASCQELLWIDRLLTDFSVDIIKPILIHEDNQSCIKQMESGRATNRSK 448          
The following BLAST results are available for this feature:
BLAST of mRNA_H-paniculata_contig20365.5275.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 vs UniRef90)
Total hits: 25
Match NameE-valueIdentityDescription
A0A7D9JFU5_PARCT2.610e-8736.21Reverse transcriptase Ty1/copia-type domain-contai... [more]
A0A7D9HZ03_PARCT5.710e-8636.81Reverse transcriptase Ty1/copia-type domain-contai... [more]
A0A6S7H8C9_PARCT9.420e-8436.21Retrovirus-related Pol poly from transposon TNT 1-... [more]
A0A7D9DPP1_PARCT1.100e-8236.42Retrovirus-related Pol poly from transposon TNT 1-... [more]
A0A6S7HEL0_PARCT1.440e-8236.46Retrovirus-related Pol poly from transposon TNT 1-... [more]
A0A5D6YB57_9STRA2.120e-8237.24Reverse transcriptase Ty1/copia-type domain-contai... [more]
A0A7M6DPI8_9CNID5.860e-8235.73Uncharacterized protein n=1 Tax=Clytia hemisphaeri... [more]
A0A6S7JEY7_PARCT1.470e-8134.75Reverse transcriptase Ty1/copia-type domain-contai... [more]
A0A7D9LDA1_PARCT8.740e-8135.73Reverse transcriptase Ty1/copia-type domain-contai... [more]
A0A182GIT5_AEDAL5.480e-8036.30Reverse transcriptase Ty1/copia-type domain-contai... [more]

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Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
H-paniculata_contig20365contigH-paniculata_contig20365:9..1619 +
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 vs UniRef902022-09-19
OGS1.0 of Halopteris paniculata Hal_grac_a_UBK monoicous2021-02-24
Properties
Property NameValue
Taxonomic scopeEukaryota
Seed ortholog score174.1
Seed ortholog evalue9e-41
Seed eggNOG ortholog164328.Phyra85518
Hectar predicted targeting categoryother localisation
EggNOG free text desc.GAG-pre-integrase domain
EggNOG OGs3QH4V@4776,COG2801@1,KOG0017@2759
COG Functional cat.L
Best tax levelPeronosporales
Best eggNOG OGNA|NA|NA
Exons2
Model size1429
Cds size825
Stop1
Start1
Relationships

The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_H-paniculata_contig20365.5275.1prot_H-paniculata_contig20365.5275.1Halopteris paniculata Hal_grac_a_UBK monoicouspolypeptideH-paniculata_contig20365 291..1297 +


The following UTR feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1622929529.1738155-UTR-H-paniculata_contig20365:8..2901622929529.1738155-UTR-H-paniculata_contig20365:8..290Halopteris paniculata Hal_grac_a_UBK monoicousUTRH-paniculata_contig20365 9..290 +
1691480900.1324692-UTR-H-paniculata_contig20365:8..2901691480900.1324692-UTR-H-paniculata_contig20365:8..290Halopteris paniculata Hal_grac_a_UBK monoicousUTRH-paniculata_contig20365 9..290 +
1622929529.2245834-UTR-H-paniculata_contig20365:1297..16191622929529.2245834-UTR-H-paniculata_contig20365:1297..1619Halopteris paniculata Hal_grac_a_UBK monoicousUTRH-paniculata_contig20365 1298..1619 +
1691480900.1725352-UTR-H-paniculata_contig20365:1297..16191691480900.1725352-UTR-H-paniculata_contig20365:1297..1619Halopteris paniculata Hal_grac_a_UBK monoicousUTRH-paniculata_contig20365 1298..1619 +


The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1622929529.1917906-CDS-H-paniculata_contig20365:290..9161622929529.1917906-CDS-H-paniculata_contig20365:290..916Halopteris paniculata Hal_grac_a_UBK monoicousCDSH-paniculata_contig20365 291..916 +
1691480900.1426432-CDS-H-paniculata_contig20365:290..9161691480900.1426432-CDS-H-paniculata_contig20365:290..916Halopteris paniculata Hal_grac_a_UBK monoicousCDSH-paniculata_contig20365 291..916 +
1622929529.20727-CDS-H-paniculata_contig20365:1098..12971622929529.20727-CDS-H-paniculata_contig20365:1098..1297Halopteris paniculata Hal_grac_a_UBK monoicousCDSH-paniculata_contig20365 1099..1297 +
1691480900.1588268-CDS-H-paniculata_contig20365:1098..12971691480900.1588268-CDS-H-paniculata_contig20365:1098..1297Halopteris paniculata Hal_grac_a_UBK monoicousCDSH-paniculata_contig20365 1099..1297 +


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_H-paniculata_contig20365.5275.1

>prot_H-paniculata_contig20365.5275.1 ID=prot_H-paniculata_contig20365.5275.1|Name=mRNA_H-paniculata_contig20365.5275.1|organism=Halopteris paniculata Hal_grac_a_UBK monoicous|type=polypeptide|length=275bp
MSTLCTVFSLVTERDFELEGMGVDATYLNAPVEEELFVKPPPEFSPFSRD
KPFVRRLRKSLYGLKQSGRNWNNTLDDFLVGIGLARSTTDSCLYFSRDDG
GETNLLVVVYVDDLVIAGRREKVDEFKHNISQHFRMKDLGSLSRMLGIEV
RHDRPNGPMTISQGSYIREVLKIYGFDEGRGVPTPVEGKVKTRHPSRPTS
PPNRSHLELTYKRLFRYLSTVPDFGIMFGGKSNGHGLEGFVDADWAEDVE
DRKSTTGYVFKLNGGAIRWCSRKR*
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mRNA from alignment at H-paniculata_contig20365:9..1619+

Legend: UTRpolypeptideCDS
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_H-paniculata_contig20365.5275.1 ID=mRNA_H-paniculata_contig20365.5275.1|Name=mRNA_H-paniculata_contig20365.5275.1|organism=Halopteris paniculata Hal_grac_a_UBK monoicous|type=mRNA|length=1611bp|location=Sequence derived from alignment at H-paniculata_contig20365:9..1619+ (Halopteris paniculata Hal_grac_a_UBK monoicous)
GAGCCGAAATCCGCGGCAGAAGCATTAAAGGGTCCAGAGGCGGAAAAATG GCGCGCGGCAATGGAGGAAGAATGGGGGGCGTTGGTGAAAAATGGGACAT GGGAAAGCGAAGACCCGGGGAGGTTACCGGCAGGGCGGAAGGCGATTCGT ACGAAATGGATTATCAAGCGGAAACTTAAGGAAGACGGCAGCGTGGCACG CTACAAAGCGTGACTGGTGGCTCAAGGTTTTTTACAGGTGGAGGGTGAAG ATTTCTTTGAAACCAGTGCCCCCGTAGCTCGCATGTCGACGTTATGTACT GTTTTTAGCCTGGTCACCGAACGTGATTTCGAATTAGAAGGCATGGGCGT AGATGCGACGTATTTGAACGCCCCGGTAGAAGAAGAGCTGTTTGTTAAGC CACCCCCCGAGTTTTCCCCTTTCTCCCGAGACAAACCATTTGTGCGCCGC CTGCGTAAAAGCCTGTACGGCCTCAAGCAGAGCGGCCGAAACTGGAATAA TACTCTTGACGATTTTCTTGTTGGGATAGGACTCGCCCGTTCCACTACCG ACTCATGCTTGTACTTTTCCCGCGACGATGGGGGAGAGACAAACCTTCTG GTGGTCGTGTATGTTGACGACCTGGTCATTGCTGGCCGTCGTGAGAAAGT AGACGAGTTCAAGCATAACATAAGTCAGCATTTTAGGATGAAAGACTTGG GCTCTCTCTCGCGCATGTTGGGAATAGAAGTACGACATGACCGCCCTAAT GGTCCCATGACCATCTCGCAGGGTAGCTACATCCGCGAGGTACTAAAAAT ATACGGTTTTGACGAGGGTCGAGGAGTACCCACCCCTGTAGAGGGAAAAG TGAAGACTCGGCACCCGAGTCGGCCAACAAGCCCTCCGAACCGAAGTCAC TTGGAGCTGTACTGTCGGACATACGCGCAGGAGTACAAGAAAGCAGCAGA GGGAGAAGTGGCAATTCAACTGAATACAGAGGCACGGTGGAATCACTCAT GTACGCCTCGACAGGAACTAGGCTTGATATAGCATACGCGGTACACGAAG CAGCATGTCGTATGGAGGACCTATGTTGAAAAGACTTCAGTACATACAAG CGCCTTTTTCGTTATCTCAGTACTGTGCCTGACTTCGGCATTATGTTCGG CGGTAAGAGTAATGGTCACGGTCTGGAAGGATTCGTTGACGCCGATTGGG CGGAAGATGTCGAGGACCGAAAGTCCACAACAGGATACGTTTTCAAGCTG AACGGTGGTGCAATACGTTGGTGCTCTAGGAAGCGATAGTTAGTCACGTG GTGCAGTACAGAGGCAGAGTACGTTGTTGCAGGAGAAGCGAGAAAGGAGA CGGTATATCTTAGGGAGTTACTAGGATCGATAGGTTTCGGATGCAGGGGA AGCACGACATTGTTTGAGGACAATAAATCAGCTATTAATCTCAGTAAGGG ATCTGGCGCACACTGCAGGACAAAATCACATCGGAGTACGATGACACGGA ATTCGAGAGTGGATTTGAGAAGGAACATTGGCATTGAAATACGTGCAGAC CGACGATCAACTTGCCGACATTTTAACGAAAGGACTAAGCAGAGTACAGT TTCAGAGACTG
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Coding sequence (CDS) from alignment at H-paniculata_contig20365:9..1619+

>mRNA_H-paniculata_contig20365.5275.1 ID=mRNA_H-paniculata_contig20365.5275.1|Name=mRNA_H-paniculata_contig20365.5275.1|organism=Halopteris paniculata Hal_grac_a_UBK monoicous|type=CDS|length=1650bp|location=Sequence derived from alignment at H-paniculata_contig20365:9..1619+ (Halopteris paniculata Hal_grac_a_UBK monoicous)
ATGTCGACGTTATGTACTGTTTTTAGCCTGGTCACCGAACGTGATTTCGA
ATTAGAAGGCATGGGCGTAGATGCGACGTATTTGAACGCCCCGGTAGAAG
AAGAGCTGTTTGTTAAGCCACCCCCCGAGTTTTCCCCTTTCTCCCGAGAC
AAACCATTTGTGCGCCGCCTGCGTAAAAGCCTGTACGGCCTCAAGCAGAG
CGGCCGAAACTGGAATAATACTCTTGACGATTTTCTTGTTGGGATAGGAC
TCGCCCGTTCCACTACCGACTCATGCTTGTACTTTTCCCGCGACGATGGG
GGAGAGACAAACCTTCTGGTGGTCGTGTATGTTGACGACCTGGTCATTGC
TGGCCGTCGTGAGAAAGTAGACGAGTTCAAGCATAACATAAGTCAGCATT
TTAGGATGAAAGACTTGGGCTCTCTCTCGCGCATGTTGGGAATAGAAGTA
CGACATGACCGCCCTAATGGTCCCATGACCATCTCGCAGGGTAGCTACAT
CCGCGAGGTACTAAAAATATACGGTTTTGACGAGGGTCGAGGAGTACCCA
CCCCTGTAGAGGGAAAAGTGAAGACTCGGCACCCGAGTCGGCCAACAAGC
CCTCCGAACCGAAGTCACTTGGAGCTATGTCGACGTTATGTACTGTTTTT
AGCCTGGTCACCGAACGTGATTTCGAATTAGAAGGCATGGGCGTAGATGC
GACGTATTTGAACGCCCCGGTAGAAGAAGAGCTGTTTGTTAAGCCACCCC
CCGAGTTTTCCCCTTTCTCCCGAGACAAACCATTTGTGCGCCGCCTGCGT
AAAAGCCTGTACGGCCTCAAGCAGAGCGGCCGAAACTGGAATAATACTCT
TGACGATTTTCTTGTTGGGATAGGACTCGCCCGTTCCACTACCGACTCAT
GCTTGTACTTTTCCCGCGACGATGGGGGAGAGACAAACCTTCTGGTGGTC
GTGTATGTTGACGACCTGGTCATTGCTGGCCGTCGTGAGAAAGTAGACGA
GTTCAAGCATAACATAAGTCAGCATTTTAGGATGAAAGACTTGGGCTCTC
TCTCGCGCATGTTGGGAATAGAAGTACGACATGACCGCCCTAATGGTCCC
ATGACCATCTCGCAGGGTAGCTACATCCGCGAGGTACTAAAAATATACGG
TTTTGACGAGGGTCGAGGAGTACCCACCCCTGTAGAGGGAAAAGTGAAGA
CTCGGCACCCGAGTCGGCCAACAAGCCCTCCGAACCGAAGTCACTTGGAG
CTTACATACAAGCGCCTTTTTCGTTATCTCAGTACTGTGCCTGACTTCGG
CATTATGTTCGGCGGTAAGAGTAATGGTCACGGTCTGGAAGGATTCGTTG
ACGCCGATTGGGCGGAAGATGTCGAGGACCGAAAGTCCACAACAGGATAC
GTTTTCAAGCTGAACGGTGGTGCAATACGTTGGTGCTCTAGGAAGCGATA
GTACATACAAGCGCCTTTTTCGTTATCTCAGTACTGTGCCTGACTTCGGC
ATTATGTTCGGCGGTAAGAGTAATGGTCACGGTCTGGAAGGATTCGTTGA
CGCCGATTGGGCGGAAGATGTCGAGGACCGAAAGTCCACAACAGGATACG
TTTTCAAGCTGAACGGTGGTGCAATACGTTGGTGCTCTAGGAAGCGATAG
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