mRNA_H-paniculata_contig20278.5243.1 (mRNA) Halopteris paniculata Hal_grac_a_UBK monoicous
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Overview
Homology
BLAST of mRNA_H-paniculata_contig20278.5243.1 vs. uniprot
Match: D7G038_ECTSI (Integral membrane protein-like protein n=1 Tax=Ectocarpus siliculosus TaxID=2880 RepID=D7G038_ECTSI) HSP 1 Score: 147 bits (370), Expect = 1.600e-41 Identity = 67/129 (51.94%), Postives = 90/129 (69.77%), Query Frame = 1
Query: 1 WDHKRSMRMGVTGAFVVTPMSFTWNIVAEWWAPGASWQAICKKQLVAVGATVPMLYAQFFSLIMQEEGKTIEDFHQKVDRDYFPTFRAGLFYWPFVGVVNFKYVPVVNRPAASSLAGLFWSIYLSHRAN 387
WDH R+MRMG+TGAF VTP SF WN+ AE APG S +A+ K V+V PML AQF SL + EEGKT+ D K+ RD+ PT + + +WP V V+N +VPV++RP SS G+FW++Y+S++AN
Sbjct: 12 WDHARTMRMGITGAFFVTPASFAWNMYAERLAPGRSLRAVVTKLGVSVAVLPPMLAAQFASLTLLEEGKTMGDVRTKLSRDFTPTLKNAILFWPVVSVINSAFVPVLSRPVFSSFVGVFWNVYISYQAN 140
BLAST of mRNA_H-paniculata_contig20278.5243.1 vs. uniprot
Match: A0A6H5JW72_9PHAE (Uncharacterized protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5JW72_9PHAE) HSP 1 Score: 147 bits (370), Expect = 3.840e-41 Identity = 67/129 (51.94%), Postives = 90/129 (69.77%), Query Frame = 1
Query: 1 WDHKRSMRMGVTGAFVVTPMSFTWNIVAEWWAPGASWQAICKKQLVAVGATVPMLYAQFFSLIMQEEGKTIEDFHQKVDRDYFPTFRAGLFYWPFVGVVNFKYVPVVNRPAASSLAGLFWSIYLSHRAN 387
WDH R+MRMG+TGAF VTP SF WN+ AE APG S +A+ K V+V PML AQF SL + EEGKT+ D K+ RD+ PT + + +WP V V+N +VPV++RP SS G+FW++Y+S++AN
Sbjct: 56 WDHTRTMRMGITGAFFVTPASFAWNMYAERLAPGRSLRAVMTKLGVSVAVLPPMLAAQFASLTLLEEGKTMGDVRTKLSRDFTPTLKNAILFWPVVSVINSTFVPVLSRPVFSSFVGVFWNVYISYQAN 184
BLAST of mRNA_H-paniculata_contig20278.5243.1 vs. uniprot
Match: A0A835ZBN1_9STRA (Uncharacterized protein n=1 Tax=Tribonema minus TaxID=303371 RepID=A0A835ZBN1_9STRA) HSP 1 Score: 114 bits (285), Expect = 3.330e-28 Identity = 58/129 (44.96%), Postives = 79/129 (61.24%), Query Frame = 1
Query: 1 WDHKRSMRMGVTGAFVVTPMSFTWNIVAEWWAPGASWQAICKKQLVAVGATVPMLYAQFFSLIMQEEGKTIEDFHQKVDRDYFPTFRAGLFYWPFVGVVNFKYVPVVNRPAASSLAGLFWSIYLSHRAN 387
W+ R+ R+ TG FV+TP+S WN AE PG +A+ K V + PM+ QF S+ + E GK + +K+ +D T AG YWPFVG++N ++VPV NRP S AGLFW+IYLSH+AN
Sbjct: 52 WNMARTARIAGTGIFVLTPLSIGWNHAAERLFPGRHVKAMLGKLAVQLLCMPPMISIQFASMTLME-GKGWDAVDRKIRQDLLETTAAGACYWPFVGLLNSRFVPVTNRPVVGSFAGLFWNIYLSHKAN 179
BLAST of mRNA_H-paniculata_contig20278.5243.1 vs. uniprot
Match: A0A7S3XGR5_OXYMA (Hypothetical protein (Fragment) n=1 Tax=Oxyrrhis marina TaxID=2969 RepID=A0A7S3XGR5_OXYMA) HSP 1 Score: 85.9 bits (211), Expect = 7.320e-19 Identity = 48/127 (37.80%), Postives = 69/127 (54.33%), Query Frame = 1
Query: 1 WDHKRSMRMGVTGAFVVTPMSFTWNIVAEWWAPG-ASWQAICKKQLVAVGATVPMLYAQFFSLIMQEEGKTIEDFHQKVDRDYFPTFRAGLFYWPFVGVVNFKYVPVVNRPAASSLAGLFWSIYLSH 378
WD +RS M V G FV P+ W + E PG A Q + K A+ A L FF I G+++E K+ D TF AG+FYWPFV ++ F++V + +R A+S AG+ W+I+LS+
Sbjct: 18 WDARRSRNMWVAGTFVTGPIGHCWQVALERMVPGNAGRQILAKTTCNAIWAWFLGLPI-FFMTITLLNGRSVESGLTKIRSDLASTFTAGMFYWPFVNLLVFRFVVLDSRAIANSCAGVLWNIFLSY 143
BLAST of mRNA_H-paniculata_contig20278.5243.1 vs. uniprot
Match: UPI00189F11F2 (mpv17-like protein isoform X1 n=1 Tax=Choloepus didactylus TaxID=27675 RepID=UPI00189F11F2) HSP 1 Score: 61.2 bits (147), Expect = 6.520e-9 Identity = 32/104 (30.77%), Postives = 56/104 (53.85%), Query Frame = 1
Query: 61 SFTWNIVAEWWAPGASWQAICKKQLVAVGATVPMLYAQFFSLIMQEEGKTIEDFHQKVDRDYFPTFRAGLFYWPFVGVVNFKYVPVVNRPAASSLAGLFWSIYL 372
++ W E PG + +A+ K L P+ + F++ + +GK +D + + ++ T+++GLFYWPFV + NF +VPV R A + L G W+ +L
Sbjct: 63 NYVWLRQLERALPGRAPRAVLAKVLCDQAIAAPVAVSAFYAGMSILQGK--DDIFLDLKQKFWNTYKSGLFYWPFVQLTNFCFVPVHWRTAYTGLCGFLWATFL 164
BLAST of mRNA_H-paniculata_contig20278.5243.1 vs. uniprot
Match: A0A439DHP6_9PEZI (Uncharacterized protein n=4 Tax=Fungi TaxID=4751 RepID=A0A439DHP6_9PEZI) HSP 1 Score: 57.0 bits (136), Expect = 1.760e-7 Identity = 38/132 (28.79%), Postives = 62/132 (46.97%), Query Frame = 1
Query: 4 DHKRSMRMGVTGAFVVTPMSFTWNIVAEWWAPGASWQAICKKQLVAVGATV--------PMLYAQFFSLIMQEEGKTIEDFHQKVDRDYFPTFRAGLFYWPFVGVVNFKYVPVVNRPAASSLAGLFWSIYLS 375
D R+ RM G V P + TW + S + + K + + A V P F S + EG + ++ K+++ YFPT + WPF+ +VNFK+VP+ +R + +L + W+ YLS
Sbjct: 45 DFARTGRMFAYGGAVFGPAATTWFQIL-------SKRVVLKNKNAEILARVACDQLIFAPAFIGIFLSSMAVLEGGSPKE---KLEKSYFPTLQTNWMVWPFIQMVNFKFVPLQHRVLSVNLISIGWNCYLS 166
BLAST of mRNA_H-paniculata_contig20278.5243.1 vs. uniprot
Match: A0A090C8J2_PODAN (Uncharacterized protein n=2 Tax=Podospora TaxID=5144 RepID=A0A090C8J2_PODAN) HSP 1 Score: 56.6 bits (135), Expect = 3.150e-7 Identity = 36/126 (28.57%), Postives = 57/126 (45.24%), Query Frame = 1
Query: 4 DHKRSMRMGVTGAFVVTPMSFTWNIVAEWWA--PGASWQAICKKQLVAVGATVPMLYAQFFSLIMQEEGKTIEDFHQKVDRDYFPTFRAGLFYWPFVGVVNFKYVPVVNRPAASSLAGLFWSIYLS 375
D R+ RM G V P + TW + + P + + I + G P F S + EG ++ + K+ Y+P A WPFV +VNFK+VP+ +R ++ + W+ YLS
Sbjct: 45 DLLRTARMASYGGLVFGPAATTWFRLLQSHVRFPSSPNRTILARVAADQGLFAPTFIGIFLSSMAVLEGGSVTE---KLSSSYWPALSANYLIWPFVQLVNFKFVPLQHRVLFVNVISIGWNCYLS 167
BLAST of mRNA_H-paniculata_contig20278.5243.1 vs. uniprot
Match: J3NHU1_GAET3 (Uncharacterized protein n=2 Tax=Magnaporthaceae TaxID=81093 RepID=J3NHU1_GAET3) HSP 1 Score: 54.7 bits (130), Expect = 1.750e-6 Identity = 37/125 (29.60%), Postives = 60/125 (48.00%), Query Frame = 1
Query: 4 DHKRSMRMGVTGAFVVTPMSFTW-NIVAEWWAPGASWQAICKKQLVAVGATVPMLYAQFFSLIMQEEGKTIEDFHQKVDRDYFPTFRAGLFYWPFVGVVNFKYVPVVNRPAASSLAGLFWSIYLS 375
D R+ RM + G V P + TW I+ + ++ I + V G P F S + EG + ++ K+ ++YF A WPFV +VNFK+VP+ +R ++ + W+ YLS
Sbjct: 46 DLTRTGRMFLYGGAVFGPAATTWFKILQQRVVLKSANATIAARVAVDQGLFAPTFIGIFLSSMAVLEGGSPKE---KLQKNYFNALTANYMLWPFVQMVNFKFVPLHHRVLFVNVISIGWNCYLS 167
BLAST of mRNA_H-paniculata_contig20278.5243.1 vs. uniprot
Match: A0A5N5PYH8_9PEZI (Uncharacterized protein n=2 Tax=Coniochaeta sp. 2T2.1 TaxID=1571157 RepID=A0A5N5PYH8_9PEZI) HSP 1 Score: 54.3 bits (129), Expect = 1.820e-6 Identity = 34/126 (26.98%), Postives = 57/126 (45.24%), Query Frame = 1
Query: 4 DHKRSMRMGVTGAFVVTPMSFTW-NIVAEWWAPGASWQAICKKQLVAVGATVPMLYAQFFSLIMQEEGKTIEDFHQKVDRDYFPTFRAGLFYWPFVGVVNFKYVPVVNRPAASSLAGLFWSIYLSH 378
D R+ RM + G V P + TW ++ + I + + G P F S + EG + + K+++ Y P WPFV +VNF++VP+ +R +L + W+ YLS+
Sbjct: 45 DFARTGRMALYGGAVFGPAATTWFRLLQRHVNLSTPNRTILARVALDQGVFAPTFICIFLSSMATLEGGSPRE---KLEKSYVPALTTNYMIWPFVQLVNFRFVPLHHRVLFVNLISIGWNCYLSY 167
BLAST of mRNA_H-paniculata_contig20278.5243.1 vs. uniprot
Match: A0A553I492_9PEZI (Uncharacterized protein n=1 Tax=Xylaria flabelliformis TaxID=2512241 RepID=A0A553I492_9PEZI) HSP 1 Score: 54.3 bits (129), Expect = 1.820e-6 Identity = 39/135 (28.89%), Postives = 61/135 (45.19%), Query Frame = 1
Query: 4 DHKRSMRMGVTGAFVVTPMSFTW-----------NIVAEWWAPGASWQAICKKQLVAVGATVPMLYAQFFSLIMQEEGKTIEDFHQKVDRDYFPTFRAGLFYWPFVGVVNFKYVPVVNRPAASSLAGLFWSIYLS 375
++ R+ RM G V P + TW N AE A + C + L A P F S + EG + ++ K+++ Y+P WPFV +VNFK+VP+ +R A ++ + W+ YLS
Sbjct: 45 EYARTARMFAYGGAVFGPAATTWFKVLSKRVVLQNKNAEMLA-----RVACDQLLFA-----PTFIGVFLSSMAVLEGSSPKE---KLEKSYWPALSTNWMVWPFVQMVNFKFVPLQHRVLAVNVVSIGWNCYLS 166 The following BLAST results are available for this feature:
BLAST of mRNA_H-paniculata_contig20278.5243.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 vs UniRef90) Total hits: 18
Pagesback to topAlignments
The following features are aligned
Analyses
This mRNA is derived from or has results from the following analyses
Properties
Relationships
The following polypeptide feature(s) derives from this mRNA:
The following CDS feature(s) are a part of this mRNA:
The following UTR feature(s) are a part of this mRNA:
Sequences
The following sequences are available for this feature:
protein sequence of mRNA_H-paniculata_contig20278.5243.1 >prot_H-paniculata_contig20278.5243.1 ID=prot_H-paniculata_contig20278.5243.1|Name=mRNA_H-paniculata_contig20278.5243.1|organism=Halopteris paniculata Hal_grac_a_UBK monoicous|type=polypeptide|length=123bp MRMGVTGAFVVTPMSFTWNIVAEWWAPGASWQAICKKQLVAVGATVPMLYback to top mRNA from alignment at H-paniculata_contig20278:2265..3001- Legend: UTRpolypeptideCDS Hold the cursor over a type above to highlight its positions in the sequence below.>mRNA_H-paniculata_contig20278.5243.1 ID=mRNA_H-paniculata_contig20278.5243.1|Name=mRNA_H-paniculata_contig20278.5243.1|organism=Halopteris paniculata Hal_grac_a_UBK monoicous|type=mRNA|length=737bp|location=Sequence derived from alignment at H-paniculata_contig20278:2265..3001- (Halopteris paniculata Hal_grac_a_UBK monoicous)back to top Coding sequence (CDS) from alignment at H-paniculata_contig20278:2265..3001- >mRNA_H-paniculata_contig20278.5243.1 ID=mRNA_H-paniculata_contig20278.5243.1|Name=mRNA_H-paniculata_contig20278.5243.1|organism=Halopteris paniculata Hal_grac_a_UBK monoicous|type=CDS|length=738bp|location=Sequence derived from alignment at H-paniculata_contig20278:2265..3001- (Halopteris paniculata Hal_grac_a_UBK monoicous)back to top |