mRNA_H-paniculata_contig20278.5243.1 (mRNA) Halopteris paniculata Hal_grac_a_UBK monoicous

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_H-paniculata_contig20278.5243.1
Unique NamemRNA_H-paniculata_contig20278.5243.1
TypemRNA
OrganismHalopteris paniculata Hal_grac_a_UBK monoicous (Halopteris paniculata Hal_grac_a_UBK monoicous)
Homology
BLAST of mRNA_H-paniculata_contig20278.5243.1 vs. uniprot
Match: D7G038_ECTSI (Integral membrane protein-like protein n=1 Tax=Ectocarpus siliculosus TaxID=2880 RepID=D7G038_ECTSI)

HSP 1 Score: 147 bits (370), Expect = 1.600e-41
Identity = 67/129 (51.94%), Postives = 90/129 (69.77%), Query Frame = 1
Query:    1 WDHKRSMRMGVTGAFVVTPMSFTWNIVAEWWAPGASWQAICKKQLVAVGATVPMLYAQFFSLIMQEEGKTIEDFHQKVDRDYFPTFRAGLFYWPFVGVVNFKYVPVVNRPAASSLAGLFWSIYLSHRAN 387
            WDH R+MRMG+TGAF VTP SF WN+ AE  APG S +A+  K  V+V    PML AQF SL + EEGKT+ D   K+ RD+ PT +  + +WP V V+N  +VPV++RP  SS  G+FW++Y+S++AN
Sbjct:   12 WDHARTMRMGITGAFFVTPASFAWNMYAERLAPGRSLRAVVTKLGVSVAVLPPMLAAQFASLTLLEEGKTMGDVRTKLSRDFTPTLKNAILFWPVVSVINSAFVPVLSRPVFSSFVGVFWNVYISYQAN 140          
BLAST of mRNA_H-paniculata_contig20278.5243.1 vs. uniprot
Match: A0A6H5JW72_9PHAE (Uncharacterized protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5JW72_9PHAE)

HSP 1 Score: 147 bits (370), Expect = 3.840e-41
Identity = 67/129 (51.94%), Postives = 90/129 (69.77%), Query Frame = 1
Query:    1 WDHKRSMRMGVTGAFVVTPMSFTWNIVAEWWAPGASWQAICKKQLVAVGATVPMLYAQFFSLIMQEEGKTIEDFHQKVDRDYFPTFRAGLFYWPFVGVVNFKYVPVVNRPAASSLAGLFWSIYLSHRAN 387
            WDH R+MRMG+TGAF VTP SF WN+ AE  APG S +A+  K  V+V    PML AQF SL + EEGKT+ D   K+ RD+ PT +  + +WP V V+N  +VPV++RP  SS  G+FW++Y+S++AN
Sbjct:   56 WDHTRTMRMGITGAFFVTPASFAWNMYAERLAPGRSLRAVMTKLGVSVAVLPPMLAAQFASLTLLEEGKTMGDVRTKLSRDFTPTLKNAILFWPVVSVINSTFVPVLSRPVFSSFVGVFWNVYISYQAN 184          
BLAST of mRNA_H-paniculata_contig20278.5243.1 vs. uniprot
Match: A0A835ZBN1_9STRA (Uncharacterized protein n=1 Tax=Tribonema minus TaxID=303371 RepID=A0A835ZBN1_9STRA)

HSP 1 Score: 114 bits (285), Expect = 3.330e-28
Identity = 58/129 (44.96%), Postives = 79/129 (61.24%), Query Frame = 1
Query:    1 WDHKRSMRMGVTGAFVVTPMSFTWNIVAEWWAPGASWQAICKKQLVAVGATVPMLYAQFFSLIMQEEGKTIEDFHQKVDRDYFPTFRAGLFYWPFVGVVNFKYVPVVNRPAASSLAGLFWSIYLSHRAN 387
            W+  R+ R+  TG FV+TP+S  WN  AE   PG   +A+  K  V +    PM+  QF S+ + E GK  +   +K+ +D   T  AG  YWPFVG++N ++VPV NRP   S AGLFW+IYLSH+AN
Sbjct:   52 WNMARTARIAGTGIFVLTPLSIGWNHAAERLFPGRHVKAMLGKLAVQLLCMPPMISIQFASMTLME-GKGWDAVDRKIRQDLLETTAAGACYWPFVGLLNSRFVPVTNRPVVGSFAGLFWNIYLSHKAN 179          
BLAST of mRNA_H-paniculata_contig20278.5243.1 vs. uniprot
Match: A0A7S3XGR5_OXYMA (Hypothetical protein (Fragment) n=1 Tax=Oxyrrhis marina TaxID=2969 RepID=A0A7S3XGR5_OXYMA)

HSP 1 Score: 85.9 bits (211), Expect = 7.320e-19
Identity = 48/127 (37.80%), Postives = 69/127 (54.33%), Query Frame = 1
Query:    1 WDHKRSMRMGVTGAFVVTPMSFTWNIVAEWWAPG-ASWQAICKKQLVAVGATVPMLYAQFFSLIMQEEGKTIEDFHQKVDRDYFPTFRAGLFYWPFVGVVNFKYVPVVNRPAASSLAGLFWSIYLSH 378
            WD +RS  M V G FV  P+   W +  E   PG A  Q + K    A+ A    L   FF  I    G+++E    K+  D   TF AG+FYWPFV ++ F++V + +R  A+S AG+ W+I+LS+
Sbjct:   18 WDARRSRNMWVAGTFVTGPIGHCWQVALERMVPGNAGRQILAKTTCNAIWAWFLGLPI-FFMTITLLNGRSVESGLTKIRSDLASTFTAGMFYWPFVNLLVFRFVVLDSRAIANSCAGVLWNIFLSY 143          
BLAST of mRNA_H-paniculata_contig20278.5243.1 vs. uniprot
Match: UPI00189F11F2 (mpv17-like protein isoform X1 n=1 Tax=Choloepus didactylus TaxID=27675 RepID=UPI00189F11F2)

HSP 1 Score: 61.2 bits (147), Expect = 6.520e-9
Identity = 32/104 (30.77%), Postives = 56/104 (53.85%), Query Frame = 1
Query:   61 SFTWNIVAEWWAPGASWQAICKKQLVAVGATVPMLYAQFFSLIMQEEGKTIEDFHQKVDRDYFPTFRAGLFYWPFVGVVNFKYVPVVNRPAASSLAGLFWSIYL 372
            ++ W    E   PG + +A+  K L       P+  + F++ +   +GK  +D    + + ++ T+++GLFYWPFV + NF +VPV  R A + L G  W+ +L
Sbjct:   63 NYVWLRQLERALPGRAPRAVLAKVLCDQAIAAPVAVSAFYAGMSILQGK--DDIFLDLKQKFWNTYKSGLFYWPFVQLTNFCFVPVHWRTAYTGLCGFLWATFL 164          
BLAST of mRNA_H-paniculata_contig20278.5243.1 vs. uniprot
Match: A0A439DHP6_9PEZI (Uncharacterized protein n=4 Tax=Fungi TaxID=4751 RepID=A0A439DHP6_9PEZI)

HSP 1 Score: 57.0 bits (136), Expect = 1.760e-7
Identity = 38/132 (28.79%), Postives = 62/132 (46.97%), Query Frame = 1
Query:    4 DHKRSMRMGVTGAFVVTPMSFTWNIVAEWWAPGASWQAICKKQLVAVGATV--------PMLYAQFFSLIMQEEGKTIEDFHQKVDRDYFPTFRAGLFYWPFVGVVNFKYVPVVNRPAASSLAGLFWSIYLS 375
            D  R+ RM   G  V  P + TW  +        S + + K +   + A V        P     F S +   EG + ++   K+++ YFPT +     WPF+ +VNFK+VP+ +R  + +L  + W+ YLS
Sbjct:   45 DFARTGRMFAYGGAVFGPAATTWFQIL-------SKRVVLKNKNAEILARVACDQLIFAPAFIGIFLSSMAVLEGGSPKE---KLEKSYFPTLQTNWMVWPFIQMVNFKFVPLQHRVLSVNLISIGWNCYLS 166          
BLAST of mRNA_H-paniculata_contig20278.5243.1 vs. uniprot
Match: A0A090C8J2_PODAN (Uncharacterized protein n=2 Tax=Podospora TaxID=5144 RepID=A0A090C8J2_PODAN)

HSP 1 Score: 56.6 bits (135), Expect = 3.150e-7
Identity = 36/126 (28.57%), Postives = 57/126 (45.24%), Query Frame = 1
Query:    4 DHKRSMRMGVTGAFVVTPMSFTWNIVAEWWA--PGASWQAICKKQLVAVGATVPMLYAQFFSLIMQEEGKTIEDFHQKVDRDYFPTFRAGLFYWPFVGVVNFKYVPVVNRPAASSLAGLFWSIYLS 375
            D  R+ RM   G  V  P + TW  + +     P +  + I  +     G   P     F S +   EG ++ +   K+   Y+P   A    WPFV +VNFK+VP+ +R    ++  + W+ YLS
Sbjct:   45 DLLRTARMASYGGLVFGPAATTWFRLLQSHVRFPSSPNRTILARVAADQGLFAPTFIGIFLSSMAVLEGGSVTE---KLSSSYWPALSANYLIWPFVQLVNFKFVPLQHRVLFVNVISIGWNCYLS 167          
BLAST of mRNA_H-paniculata_contig20278.5243.1 vs. uniprot
Match: J3NHU1_GAET3 (Uncharacterized protein n=2 Tax=Magnaporthaceae TaxID=81093 RepID=J3NHU1_GAET3)

HSP 1 Score: 54.7 bits (130), Expect = 1.750e-6
Identity = 37/125 (29.60%), Postives = 60/125 (48.00%), Query Frame = 1
Query:    4 DHKRSMRMGVTGAFVVTPMSFTW-NIVAEWWAPGASWQAICKKQLVAVGATVPMLYAQFFSLIMQEEGKTIEDFHQKVDRDYFPTFRAGLFYWPFVGVVNFKYVPVVNRPAASSLAGLFWSIYLS 375
            D  R+ RM + G  V  P + TW  I+ +     ++   I  +  V  G   P     F S +   EG + ++   K+ ++YF    A    WPFV +VNFK+VP+ +R    ++  + W+ YLS
Sbjct:   46 DLTRTGRMFLYGGAVFGPAATTWFKILQQRVVLKSANATIAARVAVDQGLFAPTFIGIFLSSMAVLEGGSPKE---KLQKNYFNALTANYMLWPFVQMVNFKFVPLHHRVLFVNVISIGWNCYLS 167          
BLAST of mRNA_H-paniculata_contig20278.5243.1 vs. uniprot
Match: A0A5N5PYH8_9PEZI (Uncharacterized protein n=2 Tax=Coniochaeta sp. 2T2.1 TaxID=1571157 RepID=A0A5N5PYH8_9PEZI)

HSP 1 Score: 54.3 bits (129), Expect = 1.820e-6
Identity = 34/126 (26.98%), Postives = 57/126 (45.24%), Query Frame = 1
Query:    4 DHKRSMRMGVTGAFVVTPMSFTW-NIVAEWWAPGASWQAICKKQLVAVGATVPMLYAQFFSLIMQEEGKTIEDFHQKVDRDYFPTFRAGLFYWPFVGVVNFKYVPVVNRPAASSLAGLFWSIYLSH 378
            D  R+ RM + G  V  P + TW  ++          + I  +  +  G   P     F S +   EG +  +   K+++ Y P        WPFV +VNF++VP+ +R    +L  + W+ YLS+
Sbjct:   45 DFARTGRMALYGGAVFGPAATTWFRLLQRHVNLSTPNRTILARVALDQGVFAPTFICIFLSSMATLEGGSPRE---KLEKSYVPALTTNYMIWPFVQLVNFRFVPLHHRVLFVNLISIGWNCYLSY 167          
BLAST of mRNA_H-paniculata_contig20278.5243.1 vs. uniprot
Match: A0A553I492_9PEZI (Uncharacterized protein n=1 Tax=Xylaria flabelliformis TaxID=2512241 RepID=A0A553I492_9PEZI)

HSP 1 Score: 54.3 bits (129), Expect = 1.820e-6
Identity = 39/135 (28.89%), Postives = 61/135 (45.19%), Query Frame = 1
Query:    4 DHKRSMRMGVTGAFVVTPMSFTW-----------NIVAEWWAPGASWQAICKKQLVAVGATVPMLYAQFFSLIMQEEGKTIEDFHQKVDRDYFPTFRAGLFYWPFVGVVNFKYVPVVNRPAASSLAGLFWSIYLS 375
            ++ R+ RM   G  V  P + TW           N  AE  A     +  C + L A     P     F S +   EG + ++   K+++ Y+P        WPFV +VNFK+VP+ +R  A ++  + W+ YLS
Sbjct:   45 EYARTARMFAYGGAVFGPAATTWFKVLSKRVVLQNKNAEMLA-----RVACDQLLFA-----PTFIGVFLSSMAVLEGSSPKE---KLEKSYWPALSTNWMVWPFVQMVNFKFVPLQHRVLAVNVVSIGWNCYLS 166          
The following BLAST results are available for this feature:
BLAST of mRNA_H-paniculata_contig20278.5243.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 vs UniRef90)
Total hits: 18
Match NameE-valueIdentityDescription
D7G038_ECTSI1.600e-4151.94Integral membrane protein-like protein n=1 Tax=Ect... [more]
A0A6H5JW72_9PHAE3.840e-4151.94Uncharacterized protein n=1 Tax=Ectocarpus sp. CCA... [more]
A0A835ZBN1_9STRA3.330e-2844.96Uncharacterized protein n=1 Tax=Tribonema minus Ta... [more]
A0A7S3XGR5_OXYMA7.320e-1937.80Hypothetical protein (Fragment) n=1 Tax=Oxyrrhis m... [more]
UPI00189F11F26.520e-930.77mpv17-like protein isoform X1 n=1 Tax=Choloepus di... [more]
A0A439DHP6_9PEZI1.760e-728.79Uncharacterized protein n=4 Tax=Fungi TaxID=4751 R... [more]
A0A090C8J2_PODAN3.150e-728.57Uncharacterized protein n=2 Tax=Podospora TaxID=51... [more]
J3NHU1_GAET31.750e-629.60Uncharacterized protein n=2 Tax=Magnaporthaceae Ta... [more]
A0A5N5PYH8_9PEZI1.820e-626.98Uncharacterized protein n=2 Tax=Coniochaeta sp. 2T... [more]
A0A553I492_9PEZI1.820e-628.89Uncharacterized protein n=1 Tax=Xylaria flabellifo... [more]

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Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
H-paniculata_contig20278contigH-paniculata_contig20278:2265..3001 -
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 vs UniRef902022-09-19
OGS1.0 of Halopteris paniculata Hal_grac_a_UBK monoicous2021-02-24
Properties
Property NameValue
Taxonomic scopeEukaryota
Seed ortholog score135.6
Seed ortholog evalue1.6e-29
Seed eggNOG ortholog2880.D7G038
Preferred nameSYM1
KEGG koko:K03259,ko:K13348,ko:K13349
KEGG Pathwayko01521,ko03013,ko04066,ko04146,ko04150,ko04151,ko04211,ko04910,map01521,map03013,map04066,map04146,map04150,map04151,map04211,map04910
KEGG ModuleM00428
Hectar predicted targeting categorysignal peptide
GOsGO:0005575,GO:0005622,GO:0005623,GO:0005737,GO:0005739,GO:0005740,GO:0005743,GO:0006066,GO:0006067,GO:0008150,GO:0008152,GO:0009987,GO:0016020,GO:0016021,GO:0016999,GO:0017144,GO:0019866,GO:0031090,GO:0031224,GO:0031966,GO:0031967,GO:0031975,GO:0034308,GO:0043226,GO:0043227,GO:0043229,GO:0043231,GO:0044237,GO:0044281,GO:0044422,GO:0044424,GO:0044425,GO:0044429,GO:0044444,GO:0044446,GO:0044464,GO:0071704,GO:1901615
EggNOG free text desc.Belongs to the peroxisomal membrane protein PXMP2 4 family
EggNOG OGsKOG1944@1,KOG1944@2759
Ec32 ortholog descriptionMpv17/PMP22
Ec32 orthologEc-12_007090.1
COG Functional cat.C
Best tax levelEukaryota
Best eggNOG OGNA|NA|NA
BRITEko00000,ko00001,ko00002,ko03012,ko03019
Exons2
Model size387
Cds size369
Stop0
Start1
Relationships

The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_H-paniculata_contig20278.5243.1prot_H-paniculata_contig20278.5243.1Halopteris paniculata Hal_grac_a_UBK monoicouspolypeptideH-paniculata_contig20278 2265..2983 -


The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1622929525.070059-CDS-H-paniculata_contig20278:2264..24891622929525.070059-CDS-H-paniculata_contig20278:2264..2489Halopteris paniculata Hal_grac_a_UBK monoicousCDSH-paniculata_contig20278 2265..2489 -
1691480898.333448-CDS-H-paniculata_contig20278:2264..24891691480898.333448-CDS-H-paniculata_contig20278:2264..2489Halopteris paniculata Hal_grac_a_UBK monoicousCDSH-paniculata_contig20278 2265..2489 -
1622929525.1518996-CDS-H-paniculata_contig20278:2839..29831622929525.1518996-CDS-H-paniculata_contig20278:2839..2983Halopteris paniculata Hal_grac_a_UBK monoicousCDSH-paniculata_contig20278 2840..2983 -
1691480898.3483846-CDS-H-paniculata_contig20278:2839..29831691480898.3483846-CDS-H-paniculata_contig20278:2839..2983Halopteris paniculata Hal_grac_a_UBK monoicousCDSH-paniculata_contig20278 2840..2983 -


The following UTR feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1622929525.1653054-UTR-H-paniculata_contig20278:2983..30011622929525.1653054-UTR-H-paniculata_contig20278:2983..3001Halopteris paniculata Hal_grac_a_UBK monoicousUTRH-paniculata_contig20278 2984..3001 -
1691480898.3563526-UTR-H-paniculata_contig20278:2983..30011691480898.3563526-UTR-H-paniculata_contig20278:2983..3001Halopteris paniculata Hal_grac_a_UBK monoicousUTRH-paniculata_contig20278 2984..3001 -


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_H-paniculata_contig20278.5243.1

>prot_H-paniculata_contig20278.5243.1 ID=prot_H-paniculata_contig20278.5243.1|Name=mRNA_H-paniculata_contig20278.5243.1|organism=Halopteris paniculata Hal_grac_a_UBK monoicous|type=polypeptide|length=123bp
MRMGVTGAFVVTPMSFTWNIVAEWWAPGASWQAICKKQLVAVGATVPMLY
AQFFSLIMQEEGKTIEDFHQKVDRDYFPTFRAGLFYWPFVGVVNFKYVPV
VNRPAASSLAGLFWSIYLSHRAN
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mRNA from alignment at H-paniculata_contig20278:2265..3001-

Legend: UTRpolypeptideCDS
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_H-paniculata_contig20278.5243.1 ID=mRNA_H-paniculata_contig20278.5243.1|Name=mRNA_H-paniculata_contig20278.5243.1|organism=Halopteris paniculata Hal_grac_a_UBK monoicous|type=mRNA|length=737bp|location=Sequence derived from alignment at H-paniculata_contig20278:2265..3001- (Halopteris paniculata Hal_grac_a_UBK monoicous)
TGGGATCACAAGCGCTCGATGAGGATGGGAGTCACCGGTGCTTTTGTGGT GACACCTATGTCCTTCACTTGGAACATCGTCGCCGAGTGGTGGGCGCCCG GCGCATCGTGGCAGGCGATTTGTAAGAAACAGCTCGTCGCGGTTGGGGCC ACGGTTCCTATGGTGAGCATATTGTATGTTTTAAACTATTTGAAGAGATG GGGGAAAAACACAACAATGCAGTGGTGTGACATGCCACTGTTTGTTTCTT CGAAAGTGTAATAAGCGTATTGGGTCTTCCACTTTGGGGAGATTTGAGGC AGTTTGCGTCTGTCACTTTGCTACTGATGAAATCATATCGTGACCTGGTT GTCGCCTTGTGTTTTGTGATAACACAGAGCGAAAAATGGATCATGCCCCC TCTTTCTTTCGTGGACCAGGCGTTGACGCTGTTCTCTGTAATATGAGATA GTACACGTTGAGATTTTTTTTTCTGTCTTGTGATTTGCTTCCAATAATTC CAAAAATTGCAGTTGTACGCTCAGTTCTTCAGCCTGATCATGCAAGAGGA AGGCAAGACCATTGAAGACTTCCACCAAAAGGTGGATCGCGACTACTTCC CCACCTTCCGCGCCGGCCTTTTCTACTGGCCGTTCGTGGGTGTCGTCAAC TTCAAGTACGTGCCTGTGGTGAACCGTCCCGCAGCGAGCAGTCTCGCCGG ACTGTTCTGGAGCATCTATCTGTCACACCGCGCGAAC
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Coding sequence (CDS) from alignment at H-paniculata_contig20278:2265..3001-

>mRNA_H-paniculata_contig20278.5243.1 ID=mRNA_H-paniculata_contig20278.5243.1|Name=mRNA_H-paniculata_contig20278.5243.1|organism=Halopteris paniculata Hal_grac_a_UBK monoicous|type=CDS|length=738bp|location=Sequence derived from alignment at H-paniculata_contig20278:2265..3001- (Halopteris paniculata Hal_grac_a_UBK monoicous)
ATGAGGATGGGAGTCACCGGTGCTTTTGTGGTGACACCTATGTCCTTCAC
TTGGAACATCGTCGCCGAGTGGTGGGCGCCCGGCGCATCGTGGCAGGCGA
TTTGTAAGAAACAGCTCGTCGCGGTTGGGGCCACGGTTCCTATGATGAGG
ATGGGAGTCACCGGTGCTTTTGTGGTGACACCTATGTCCTTCACTTGGAA
CATCGTCGCCGAGTGGTGGGCGCCCGGCGCATCGTGGCAGGCGATTTGTA
AGAAACAGCTCGTCGCGGTTGGGGCCACGGTTCCTATGTTGTACGCTCAG
TTCTTCAGCCTGATCATGCAAGAGGAAGGCAAGACCATTGAAGACTTCCA
CCAAAAGGTGGATCGCGACTACTTCCCCACCTTCCGCGCCGGCCTTTTCT
ACTGGCCGTTCGTGGGTGTCGTCAACTTCAAGTACGTGCCTGTGGTGAAC
CGTCCCGCAGCGAGCAGTCTCGCCGGACTGTTCTGGAGCATCTATCTGTC
ACACCGCGCGAACTTGTACGCTCAGTTCTTCAGCCTGATCATGCAAGAGG
AAGGCAAGACCATTGAAGACTTCCACCAAAAGGTGGATCGCGACTACTTC
CCCACCTTCCGCGCCGGCCTTTTCTACTGGCCGTTCGTGGGTGTCGTCAA
CTTCAAGTACGTGCCTGTGGTGAACCGTCCCGCAGCGAGCAGTCTCGCCG
GACTGTTCTGGAGCATCTATCTGTCACACCGCGCGAAC
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