mRNA_H-paniculata_contig20252.5237.1 (mRNA) Halopteris paniculata Hal_grac_a_UBK monoicous

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_H-paniculata_contig20252.5237.1
Unique NamemRNA_H-paniculata_contig20252.5237.1
TypemRNA
OrganismHalopteris paniculata Hal_grac_a_UBK monoicous (Halopteris paniculata Hal_grac_a_UBK monoicous)
Homology
BLAST of mRNA_H-paniculata_contig20252.5237.1 vs. uniprot
Match: D7G902_ECTSI (Uncharacterized protein n=1 Tax=Ectocarpus siliculosus TaxID=2880 RepID=D7G902_ECTSI)

HSP 1 Score: 164 bits (415), Expect = 1.800e-47
Identity = 84/87 (96.55%), Postives = 84/87 (96.55%), Query Frame = 1
Query:    1 AISERAYLAEKNIEVLVKLKQGQDEVPRGAVVTDYSDSVLIPSAIVNHTNAEIRKLGGEKVRTLNKIKQFRKNINLMQWHHTYLDEQ 261
            AISERAYLAEKNIEVLVKLKQGQDEVPRGAVVTDY DSVLIPSAIVNHTN EIRKLGGEKVRTLNKIKQFRKNINLMQW HTYLDEQ
Sbjct:  146 AISERAYLAEKNIEVLVKLKQGQDEVPRGAVVTDYGDSVLIPSAIVNHTNEEIRKLGGEKVRTLNKIKQFRKNINLMQWDHTYLDEQ 232          
BLAST of mRNA_H-paniculata_contig20252.5237.1 vs. uniprot
Match: A0A7S2UYJ1_9STRA (Hypothetical protein (Fragment) n=1 Tax=Fibrocapsa japonica TaxID=94617 RepID=A0A7S2UYJ1_9STRA)

HSP 1 Score: 99.8 bits (247), Expect = 1.970e-24
Identity = 50/87 (57.47%), Postives = 63/87 (72.41%), Query Frame = 1
Query:    1 AISERAYLAEKNIEVLVKLKQGQDEVPRGAVVTDYSDSVLIPSAIVNHTNAEIRKLGGEKVRTLNKIKQFRKNINLMQWHHTYLDEQ 261
            A+  +  L  +N+EVLVKLKQGQDEV + AVVTDYSDSVL+P   +   N EI   G  KV+TL+KIK FRK+IN M+W H YL++Q
Sbjct:    6 ALLSKIELGSRNLEVLVKLKQGQDEVEQEAVVTDYSDSVLLPIQAIQRKNTEILDRGQSKVKTLHKIKNFRKSINYMEWEHRYLEDQ 92          
BLAST of mRNA_H-paniculata_contig20252.5237.1 vs. uniprot
Match: A0A7S2CAS4_9STRA (Hypothetical protein n=1 Tax=Florenciella parvula TaxID=236787 RepID=A0A7S2CAS4_9STRA)

HSP 1 Score: 88.6 bits (218), Expect = 1.320e-18
Identity = 41/87 (47.13%), Postives = 68/87 (78.16%), Query Frame = 1
Query:    1 AISERAYLAEKNIEVLVKLKQGQDEVPRGAVVTDYSDSVLIPSAIVNHTNAEIRKLGGEKVRTLNKIKQFRKNINLMQWHHTYLDEQ 261
            A++ +  LA++N+E+LV LKQGQ+E+ + A+VTD+S+ +LIP+  V+  N  I+ LG +KV+ L++IK+FRK+IN M+W H+Y++ Q
Sbjct:  549 ALASKVKLADRNLEMLVWLKQGQNELQQEAMVTDWSEGLLIPTTRVSKCNDTIKALGADKVQILHRIKKFRKSINYMEWEHSYMETQ 635          
BLAST of mRNA_H-paniculata_contig20252.5237.1 vs. uniprot
Match: A0A7S4DB68_HETAK (Hypothetical protein n=1 Tax=Heterosigma akashiwo TaxID=2829 RepID=A0A7S4DB68_HETAK)

HSP 1 Score: 83.6 bits (205), Expect = 1.240e-17
Identity = 42/70 (60.00%), Postives = 51/70 (72.86%), Query Frame = 1
Query:   43 VLVKLKQGQDEVPRGAVVTDYSDSVLIPSAIVNHTNAEIRKLGGEKVRTLNKIKQFRKNINLMQWHHTYL 252
            VLV+LKQGQDEV   AVVTDY  + L+P+ +V   NAEI   GGEKV+ LNKIK FRK+IN +QW   +L
Sbjct:    2 VLVRLKQGQDEVKPEAVVTDYGGAALLPADLVRQKNAEILAAGGEKVKILNKIKNFRKSINYLQWEKNHL 71          
BLAST of mRNA_H-paniculata_contig20252.5237.1 vs. uniprot
Match: A0A2R5GS38_9STRA (Cilia- and flagella-associated protein 43 n=1 Tax=Hondaea fermentalgiana TaxID=2315210 RepID=A0A2R5GS38_9STRA)

HSP 1 Score: 84.7 bits (208), Expect = 3.050e-17
Identity = 39/86 (45.35%), Postives = 60/86 (69.77%), Query Frame = 1
Query:    4 ISERAYLAEKNIEVLVKLKQGQDEVPRGAVVTDYSDSVLIPSAIVNHTNAEIRKLGGEKVRTLNKIKQFRKNINLMQWHHTYLDEQ 261
            + E   L  +++EV++++KQGQDEV  GA++T Y+DS+L+  A++   NAEI  LG  KV  + K+K FRK+IN M+W H Y+ +Q
Sbjct: 1532 LQESEKLESQDLEVIIRIKQGQDEVKAGALITSYADSMLLDRAVIEAENAEIVNLGDAKVGIMKKMKDFRKSINYMEWEHKYMLQQ 1617          
BLAST of mRNA_H-paniculata_contig20252.5237.1 vs. uniprot
Match: A0A813LGU7_POLGL (Hypothetical protein n=1 Tax=Polarella glacialis TaxID=89957 RepID=A0A813LGU7_POLGL)

HSP 1 Score: 84.3 bits (207), Expect = 3.560e-17
Identity = 41/76 (53.95%), Postives = 56/76 (73.68%), Query Frame = 1
Query:   34 NIEVLVKLKQGQDEVPRGAVVTDYSDSVLIPSAIVNHTNAEIRKLGGEKVRTLNKIKQFRKNINLMQWHHTYLDEQ 261
            +IE+L KL+QGQ EVP+ AVVTDYSD+++I   +V   N  I +LG +KV TLN IK+FRK ++L+QW +  LD Q
Sbjct:  199 DIELLFKLRQGQVEVPQAAVVTDYSDAIVIDQEVVQSRNTRILELGKDKVSTLNTIKEFRKKLSLLQWEYNMLDAQ 274          
BLAST of mRNA_H-paniculata_contig20252.5237.1 vs. uniprot
Match: A0A813FMP4_POLGL (Cilia- and flagella-associated protein 43 n=1 Tax=Polarella glacialis TaxID=89957 RepID=A0A813FMP4_POLGL)

HSP 1 Score: 84.3 bits (207), Expect = 4.150e-17
Identity = 41/76 (53.95%), Postives = 56/76 (73.68%), Query Frame = 1
Query:   34 NIEVLVKLKQGQDEVPRGAVVTDYSDSVLIPSAIVNHTNAEIRKLGGEKVRTLNKIKQFRKNINLMQWHHTYLDEQ 261
            +IE+L KL+QGQ EVP+ AVVTDYSD+++I   +V   N  I +LG +KV TLN IK+FRK ++L+QW +  LD Q
Sbjct: 1544 DIELLFKLRQGQVEVPQAAVVTDYSDAIVIDQEVVQSRNTRILELGKDKVSTLNTIKEFRKKLSLLQWEYNMLDAQ 1619          
BLAST of mRNA_H-paniculata_contig20252.5237.1 vs. uniprot
Match: A0A7S3HNR7_9STRA (Cilia- and flagella-associated protein 43 (Fragment) n=1 Tax=Spumella elongata TaxID=89044 RepID=A0A7S3HNR7_9STRA)

HSP 1 Score: 84.0 bits (206), Expect = 5.600e-17
Identity = 36/68 (52.94%), Postives = 56/68 (82.35%), Query Frame = 1
Query:   34 NIEVLVKLKQGQDEVPRGAVVTDYSDSVLIPSAIVNHTNAEIRKLGGEKVRTLNKIKQFRKNINLMQW 237
            N++++V+L+QGQDEV + AVVTDYSD++L+PS +++  N+ I++LG EK+  L+KIK FR+ INL+ W
Sbjct:  927 NLDIIVRLRQGQDEVDKDAVVTDYSDALLLPSTVISKYNSRIKELGREKISVLSKIKLFRRKINLIDW 994          
BLAST of mRNA_H-paniculata_contig20252.5237.1 vs. uniprot
Match: A0A7S3S4D0_9SPIT (Hypothetical protein (Fragment) n=1 Tax=Strombidinopsis acuminata TaxID=141414 RepID=A0A7S3S4D0_9SPIT)

HSP 1 Score: 78.6 bits (192), Expect = 5.650e-17
Identity = 39/73 (53.42%), Postives = 52/73 (71.23%), Query Frame = 1
Query:   34 NIEVLVKLKQGQDEVPRGAVVTDYSDSVLIPSAIVNHTNAEIRKLGGEKVRTLNKIKQFRKNINLMQWHHTYL 252
            +IE+L KLKQGQ EVP+ AVVTDYSD+++I S +V   N  I +LG +K  TL  IK+FRK +N +QW +  L
Sbjct:   27 DIEILFKLKQGQVEVPQAAVVTDYSDAIVIDSDVVESRNRRIFELGKDKTGTLETIKEFRKKLNFIQWEYKML 99          
BLAST of mRNA_H-paniculata_contig20252.5237.1 vs. uniprot
Match: A0A7S3M9S0_9STRA (Hypothetical protein (Fragment) n=1 Tax=Spumella elongata TaxID=89044 RepID=A0A7S3M9S0_9STRA)

HSP 1 Score: 79.7 bits (195), Expect = 1.120e-16
Identity = 41/78 (52.56%), Postives = 55/78 (70.51%), Query Frame = 1
Query:   28 EKNIEVLVKLKQGQDEVPRGAVVTDYSDSVLIPSAIVNHTNAEIRKLGGEKVRTLNKIKQFRKNINLMQWHHTYLDEQ 261
            E +IE+L KLKQGQ EVP+ AVVTDYSD+V+I + +V   N  I +LG +K  TL  IK+FRK ++L+QW +  L  Q
Sbjct:    8 EFDIEILFKLKQGQVEVPQAAVVTDYSDAVVIDNEVVESRNRRILELGKDKTNTLETIKEFRKKLSLIQWEYKMLQFQ 85          
The following BLAST results are available for this feature:
BLAST of mRNA_H-paniculata_contig20252.5237.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 vs UniRef90)
Total hits: 25
Match NameE-valueIdentityDescription
D7G902_ECTSI1.800e-4796.55Uncharacterized protein n=1 Tax=Ectocarpus silicul... [more]
A0A7S2UYJ1_9STRA1.970e-2457.47Hypothetical protein (Fragment) n=1 Tax=Fibrocapsa... [more]
A0A7S2CAS4_9STRA1.320e-1847.13Hypothetical protein n=1 Tax=Florenciella parvula ... [more]
A0A7S4DB68_HETAK1.240e-1760.00Hypothetical protein n=1 Tax=Heterosigma akashiwo ... [more]
A0A2R5GS38_9STRA3.050e-1745.35Cilia- and flagella-associated protein 43 n=1 Tax=... [more]
A0A813LGU7_POLGL3.560e-1753.95Hypothetical protein n=1 Tax=Polarella glacialis T... [more]
A0A813FMP4_POLGL4.150e-1753.95Cilia- and flagella-associated protein 43 n=1 Tax=... [more]
A0A7S3HNR7_9STRA5.600e-1752.94Cilia- and flagella-associated protein 43 (Fragmen... [more]
A0A7S3S4D0_9SPIT5.650e-1753.42Hypothetical protein (Fragment) n=1 Tax=Strombidin... [more]
A0A7S3M9S0_9STRA1.120e-1652.56Hypothetical protein (Fragment) n=1 Tax=Spumella e... [more]

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Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
H-paniculata_contig20252contigH-paniculata_contig20252:200..1314 +
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 vs UniRef902022-09-19
OGS1.0 of Halopteris paniculata Hal_grac_a_UBK monoicous2021-02-24
Properties
Property NameValue
Taxonomic scopeEukaryota
Seed ortholog score166.4
Seed ortholog evalue6e-39
Seed eggNOG ortholog2880.D7G902
Preferred nameCFAP43
Hectar predicted targeting categoryother localisation
GOsGO:0001932,GO:0001933,GO:0003674,GO:0004857,GO:0004860,GO:0006469,GO:0008150,GO:0009892,GO:0009966,GO:0009968,GO:0010563,GO:0010605,GO:0010646,GO:0010648,GO:0010941,GO:0019207,GO:0019210,GO:0019220,GO:0019222,GO:0019887,GO:0023051,GO:0023057,GO:0030234,GO:0031323,GO:0031324,GO:0031399,GO:0031400,GO:0032268,GO:0032269,GO:0033673,GO:0042325,GO:0042326,GO:0042981,GO:0043066,GO:0043067,GO:0043069,GO:0043086,GO:0043549,GO:0044092,GO:0045859,GO:0045936,GO:0048519,GO:0048523,GO:0048583,GO:0048585,GO:0050789,GO:0050790,GO:0050794,GO:0051171,GO:0051172,GO:0051174,GO:0051246,GO:0051248,GO:0051338,GO:0051348,GO:0060255,GO:0060548,GO:0065007,GO:0065009,GO:0080090,GO:0098772,GO:1902041,GO:1902042,GO:2001233,GO:2001234,GO:2001236,GO:2001237
EggNOG OGs2CME1@1,2QQ39@2759
Ec32 ortholog descriptionWD40 repeat
Ec32 orthologEc-15_002430.3
Best tax levelEukaryota
Best eggNOG OGNA|NA|NA
Exons3
Model size261
Cds size261
Stop0
Start0
Relationships

The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_H-paniculata_contig20252.5237.1prot_H-paniculata_contig20252.5237.1Halopteris paniculata Hal_grac_a_UBK monoicouspolypeptideH-paniculata_contig20252 200..1314 +


The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1622929524.3645413-CDS-H-paniculata_contig20252:199..2621622929524.3645413-CDS-H-paniculata_contig20252:199..262Halopteris paniculata Hal_grac_a_UBK monoicousCDSH-paniculata_contig20252 200..262 +
1691480898.0337667-CDS-H-paniculata_contig20252:199..2621691480898.0337667-CDS-H-paniculata_contig20252:199..262Halopteris paniculata Hal_grac_a_UBK monoicousCDSH-paniculata_contig20252 200..262 +
1622929524.3852408-CDS-H-paniculata_contig20252:567..6841622929524.3852408-CDS-H-paniculata_contig20252:567..684Halopteris paniculata Hal_grac_a_UBK monoicousCDSH-paniculata_contig20252 568..684 +
1691480898.045762-CDS-H-paniculata_contig20252:567..6841691480898.045762-CDS-H-paniculata_contig20252:567..684Halopteris paniculata Hal_grac_a_UBK monoicousCDSH-paniculata_contig20252 568..684 +
1622929524.4031458-CDS-H-paniculata_contig20252:1233..13141622929524.4031458-CDS-H-paniculata_contig20252:1233..1314Halopteris paniculata Hal_grac_a_UBK monoicousCDSH-paniculata_contig20252 1234..1314 +
1691480898.0576077-CDS-H-paniculata_contig20252:1233..13141691480898.0576077-CDS-H-paniculata_contig20252:1233..1314Halopteris paniculata Hal_grac_a_UBK monoicousCDSH-paniculata_contig20252 1234..1314 +


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_H-paniculata_contig20252.5237.1

>prot_H-paniculata_contig20252.5237.1 ID=prot_H-paniculata_contig20252.5237.1|Name=mRNA_H-paniculata_contig20252.5237.1|organism=Halopteris paniculata Hal_grac_a_UBK monoicous|type=polypeptide|length=87bp
AISERAYLAEKNIEVLVKLKQGQDEVPRGAVVTDYSDSVLIPSAIVNHTN
AEIRKLGGEKVRTLNKIKQFRKNINLMQWHHTYLDEQ
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mRNA from alignment at H-paniculata_contig20252:200..1314+

Legend: polypeptideCDS
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_H-paniculata_contig20252.5237.1 ID=mRNA_H-paniculata_contig20252.5237.1|Name=mRNA_H-paniculata_contig20252.5237.1|organism=Halopteris paniculata Hal_grac_a_UBK monoicous|type=mRNA|length=1115bp|location=Sequence derived from alignment at H-paniculata_contig20252:200..1314+ (Halopteris paniculata Hal_grac_a_UBK monoicous)
GCTATCAGCGAGCGTGCTTACCTGGCGGAGAAAAACATCGAAGTACTGGT TAAGTTGAAACAGGTGCGCTTTGACATCAACGGGTAGTCGACCAACACCT CATCTATCTGCGTTCAAAATATTGGGTTGAATTATTGCGGTAGTGTTTTC CGAGCTACGGCAAGGGAACTGTACGTACGCAATGTCTGCGGGAAGTTACA GGTATGTTTCATAACCTATTCAAATAGCATATGCATTATATAGGCTGGTT GGCGATTGACAGTTGAGCTTGTCGTTCATTTATTTCCTTGGATTTTCTGA CTCCCGTACCAATCCCGGTGTCCGACAGCTACGACTGACTGTCATCGTTC GTCGTCTGCTGTACTAAGGGTCAAGATGAAGTGCCGCGGGGAGCGGTGGT GACGGACTACAGTGACAGCGTGCTCATTCCGTCAGCAATTGTGAACCACA CAAACGCCGAAATTCGCAAACTGGGTGGGGAAAAGGTATGACATTCCTTC AAGACACCTCGCTAGCTTTCCTGTTGAAACGGCCACAGGCGTTTATGCCT GCCTTTGTAGTCTCGACATCATTCTCTGTTCCTCGATGTCAAGAAGCACA GTGCCGACAAGGTAGCCACATGTGTGTATGTCTTTAATCATCAACGCCTA CGCAAGCATAAGAGGATGTGGCTTTCGCCACTGCTGCAGTGTCTACAGTT TACTGTAGAAATTTCGCCCAGGCTCGATAATATTGGTCGCGGTATGTTCA CAACGAACGACCAGTTTTGCAAGTTGCGTCGCTCATCTCAACATCGCTAT GGAGTAGTTTACTGATAGGAGCTGTTCGAAGACAAAGGAGGGATGGTGTC ACCTGGAAATATCCTCCCCCGACAAACAGGTTGGTCTCCACCGCCCCGGG CAAGGGCAGGGTAAAGTGTAGGTGCGACAAGCTGCAACTTCAGACAGAGA ACGGGGTGATATGAAACATCTCTGCCGATTTTAACAATTTATTCCTGCCC GTCCTCTCTTATCATGAATTTTTGGATGTTTTAGGTTAGAACTTTGAACA AGATCAAGCAATTCCGAAAGAACATCAACCTAATGCAGTGGCACCACACT TACCTGGACGAACAG
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Coding sequence (CDS) from alignment at H-paniculata_contig20252:200..1314+

>mRNA_H-paniculata_contig20252.5237.1 ID=mRNA_H-paniculata_contig20252.5237.1|Name=mRNA_H-paniculata_contig20252.5237.1|organism=Halopteris paniculata Hal_grac_a_UBK monoicous|type=CDS|length=522bp|location=Sequence derived from alignment at H-paniculata_contig20252:200..1314+ (Halopteris paniculata Hal_grac_a_UBK monoicous)
GCTATCAGCGAGCGTGCTTACCTGGCGGAGAAAAACATCGAAGTACTGGT
TAAGTTGAAACAGGCTATCAGCGAGCGTGCTTACCTGGCGGAGAAAAACA
TCGAAGTACTGGTTAAGTTGAAACAGGGTCAAGATGAAGTGCCGCGGGGA
GCGGTGGTGACGGACTACAGTGACAGCGTGCTCATTCCGTCAGCAATTGT
GAACCACACAAACGCCGAAATTCGCAAACTGGGTGGGGAAAAGGGTCAAG
ATGAAGTGCCGCGGGGAGCGGTGGTGACGGACTACAGTGACAGCGTGCTC
ATTCCGTCAGCAATTGTGAACCACACAAACGCCGAAATTCGCAAACTGGG
TGGGGAAAAGGTTAGAACTTTGAACAAGATCAAGCAATTCCGAAAGAACA
TCAACCTAATGCAGTGGCACCACACTTACCTGGACGAACAGGTTAGAACT
TTGAACAAGATCAAGCAATTCCGAAAGAACATCAACCTAATGCAGTGGCA
CCACACTTACCTGGACGAACAG
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