mRNA_H-paniculata_contig20252.5237.1 (mRNA) Halopteris paniculata Hal_grac_a_UBK monoicous
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Overview
Homology
BLAST of mRNA_H-paniculata_contig20252.5237.1 vs. uniprot
Match: D7G902_ECTSI (Uncharacterized protein n=1 Tax=Ectocarpus siliculosus TaxID=2880 RepID=D7G902_ECTSI) HSP 1 Score: 164 bits (415), Expect = 1.800e-47 Identity = 84/87 (96.55%), Postives = 84/87 (96.55%), Query Frame = 1
Query: 1 AISERAYLAEKNIEVLVKLKQGQDEVPRGAVVTDYSDSVLIPSAIVNHTNAEIRKLGGEKVRTLNKIKQFRKNINLMQWHHTYLDEQ 261
AISERAYLAEKNIEVLVKLKQGQDEVPRGAVVTDY DSVLIPSAIVNHTN EIRKLGGEKVRTLNKIKQFRKNINLMQW HTYLDEQ
Sbjct: 146 AISERAYLAEKNIEVLVKLKQGQDEVPRGAVVTDYGDSVLIPSAIVNHTNEEIRKLGGEKVRTLNKIKQFRKNINLMQWDHTYLDEQ 232
BLAST of mRNA_H-paniculata_contig20252.5237.1 vs. uniprot
Match: A0A7S2UYJ1_9STRA (Hypothetical protein (Fragment) n=1 Tax=Fibrocapsa japonica TaxID=94617 RepID=A0A7S2UYJ1_9STRA) HSP 1 Score: 99.8 bits (247), Expect = 1.970e-24 Identity = 50/87 (57.47%), Postives = 63/87 (72.41%), Query Frame = 1
Query: 1 AISERAYLAEKNIEVLVKLKQGQDEVPRGAVVTDYSDSVLIPSAIVNHTNAEIRKLGGEKVRTLNKIKQFRKNINLMQWHHTYLDEQ 261
A+ + L +N+EVLVKLKQGQDEV + AVVTDYSDSVL+P + N EI G KV+TL+KIK FRK+IN M+W H YL++Q
Sbjct: 6 ALLSKIELGSRNLEVLVKLKQGQDEVEQEAVVTDYSDSVLLPIQAIQRKNTEILDRGQSKVKTLHKIKNFRKSINYMEWEHRYLEDQ 92
BLAST of mRNA_H-paniculata_contig20252.5237.1 vs. uniprot
Match: A0A7S2CAS4_9STRA (Hypothetical protein n=1 Tax=Florenciella parvula TaxID=236787 RepID=A0A7S2CAS4_9STRA) HSP 1 Score: 88.6 bits (218), Expect = 1.320e-18 Identity = 41/87 (47.13%), Postives = 68/87 (78.16%), Query Frame = 1
Query: 1 AISERAYLAEKNIEVLVKLKQGQDEVPRGAVVTDYSDSVLIPSAIVNHTNAEIRKLGGEKVRTLNKIKQFRKNINLMQWHHTYLDEQ 261
A++ + LA++N+E+LV LKQGQ+E+ + A+VTD+S+ +LIP+ V+ N I+ LG +KV+ L++IK+FRK+IN M+W H+Y++ Q
Sbjct: 549 ALASKVKLADRNLEMLVWLKQGQNELQQEAMVTDWSEGLLIPTTRVSKCNDTIKALGADKVQILHRIKKFRKSINYMEWEHSYMETQ 635
BLAST of mRNA_H-paniculata_contig20252.5237.1 vs. uniprot
Match: A0A7S4DB68_HETAK (Hypothetical protein n=1 Tax=Heterosigma akashiwo TaxID=2829 RepID=A0A7S4DB68_HETAK) HSP 1 Score: 83.6 bits (205), Expect = 1.240e-17 Identity = 42/70 (60.00%), Postives = 51/70 (72.86%), Query Frame = 1
Query: 43 VLVKLKQGQDEVPRGAVVTDYSDSVLIPSAIVNHTNAEIRKLGGEKVRTLNKIKQFRKNINLMQWHHTYL 252
VLV+LKQGQDEV AVVTDY + L+P+ +V NAEI GGEKV+ LNKIK FRK+IN +QW +L
Sbjct: 2 VLVRLKQGQDEVKPEAVVTDYGGAALLPADLVRQKNAEILAAGGEKVKILNKIKNFRKSINYLQWEKNHL 71
BLAST of mRNA_H-paniculata_contig20252.5237.1 vs. uniprot
Match: A0A2R5GS38_9STRA (Cilia- and flagella-associated protein 43 n=1 Tax=Hondaea fermentalgiana TaxID=2315210 RepID=A0A2R5GS38_9STRA) HSP 1 Score: 84.7 bits (208), Expect = 3.050e-17 Identity = 39/86 (45.35%), Postives = 60/86 (69.77%), Query Frame = 1
Query: 4 ISERAYLAEKNIEVLVKLKQGQDEVPRGAVVTDYSDSVLIPSAIVNHTNAEIRKLGGEKVRTLNKIKQFRKNINLMQWHHTYLDEQ 261
+ E L +++EV++++KQGQDEV GA++T Y+DS+L+ A++ NAEI LG KV + K+K FRK+IN M+W H Y+ +Q
Sbjct: 1532 LQESEKLESQDLEVIIRIKQGQDEVKAGALITSYADSMLLDRAVIEAENAEIVNLGDAKVGIMKKMKDFRKSINYMEWEHKYMLQQ 1617
BLAST of mRNA_H-paniculata_contig20252.5237.1 vs. uniprot
Match: A0A813LGU7_POLGL (Hypothetical protein n=1 Tax=Polarella glacialis TaxID=89957 RepID=A0A813LGU7_POLGL) HSP 1 Score: 84.3 bits (207), Expect = 3.560e-17 Identity = 41/76 (53.95%), Postives = 56/76 (73.68%), Query Frame = 1
Query: 34 NIEVLVKLKQGQDEVPRGAVVTDYSDSVLIPSAIVNHTNAEIRKLGGEKVRTLNKIKQFRKNINLMQWHHTYLDEQ 261
+IE+L KL+QGQ EVP+ AVVTDYSD+++I +V N I +LG +KV TLN IK+FRK ++L+QW + LD Q
Sbjct: 199 DIELLFKLRQGQVEVPQAAVVTDYSDAIVIDQEVVQSRNTRILELGKDKVSTLNTIKEFRKKLSLLQWEYNMLDAQ 274
BLAST of mRNA_H-paniculata_contig20252.5237.1 vs. uniprot
Match: A0A813FMP4_POLGL (Cilia- and flagella-associated protein 43 n=1 Tax=Polarella glacialis TaxID=89957 RepID=A0A813FMP4_POLGL) HSP 1 Score: 84.3 bits (207), Expect = 4.150e-17 Identity = 41/76 (53.95%), Postives = 56/76 (73.68%), Query Frame = 1
Query: 34 NIEVLVKLKQGQDEVPRGAVVTDYSDSVLIPSAIVNHTNAEIRKLGGEKVRTLNKIKQFRKNINLMQWHHTYLDEQ 261
+IE+L KL+QGQ EVP+ AVVTDYSD+++I +V N I +LG +KV TLN IK+FRK ++L+QW + LD Q
Sbjct: 1544 DIELLFKLRQGQVEVPQAAVVTDYSDAIVIDQEVVQSRNTRILELGKDKVSTLNTIKEFRKKLSLLQWEYNMLDAQ 1619
BLAST of mRNA_H-paniculata_contig20252.5237.1 vs. uniprot
Match: A0A7S3HNR7_9STRA (Cilia- and flagella-associated protein 43 (Fragment) n=1 Tax=Spumella elongata TaxID=89044 RepID=A0A7S3HNR7_9STRA) HSP 1 Score: 84.0 bits (206), Expect = 5.600e-17 Identity = 36/68 (52.94%), Postives = 56/68 (82.35%), Query Frame = 1
Query: 34 NIEVLVKLKQGQDEVPRGAVVTDYSDSVLIPSAIVNHTNAEIRKLGGEKVRTLNKIKQFRKNINLMQW 237
N++++V+L+QGQDEV + AVVTDYSD++L+PS +++ N+ I++LG EK+ L+KIK FR+ INL+ W
Sbjct: 927 NLDIIVRLRQGQDEVDKDAVVTDYSDALLLPSTVISKYNSRIKELGREKISVLSKIKLFRRKINLIDW 994
BLAST of mRNA_H-paniculata_contig20252.5237.1 vs. uniprot
Match: A0A7S3S4D0_9SPIT (Hypothetical protein (Fragment) n=1 Tax=Strombidinopsis acuminata TaxID=141414 RepID=A0A7S3S4D0_9SPIT) HSP 1 Score: 78.6 bits (192), Expect = 5.650e-17 Identity = 39/73 (53.42%), Postives = 52/73 (71.23%), Query Frame = 1
Query: 34 NIEVLVKLKQGQDEVPRGAVVTDYSDSVLIPSAIVNHTNAEIRKLGGEKVRTLNKIKQFRKNINLMQWHHTYL 252
+IE+L KLKQGQ EVP+ AVVTDYSD+++I S +V N I +LG +K TL IK+FRK +N +QW + L
Sbjct: 27 DIEILFKLKQGQVEVPQAAVVTDYSDAIVIDSDVVESRNRRIFELGKDKTGTLETIKEFRKKLNFIQWEYKML 99
BLAST of mRNA_H-paniculata_contig20252.5237.1 vs. uniprot
Match: A0A7S3M9S0_9STRA (Hypothetical protein (Fragment) n=1 Tax=Spumella elongata TaxID=89044 RepID=A0A7S3M9S0_9STRA) HSP 1 Score: 79.7 bits (195), Expect = 1.120e-16 Identity = 41/78 (52.56%), Postives = 55/78 (70.51%), Query Frame = 1
Query: 28 EKNIEVLVKLKQGQDEVPRGAVVTDYSDSVLIPSAIVNHTNAEIRKLGGEKVRTLNKIKQFRKNINLMQWHHTYLDEQ 261
E +IE+L KLKQGQ EVP+ AVVTDYSD+V+I + +V N I +LG +K TL IK+FRK ++L+QW + L Q
Sbjct: 8 EFDIEILFKLKQGQVEVPQAAVVTDYSDAVVIDNEVVESRNRRILELGKDKTNTLETIKEFRKKLSLIQWEYKMLQFQ 85 The following BLAST results are available for this feature:
BLAST of mRNA_H-paniculata_contig20252.5237.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 vs UniRef90) Total hits: 25
Pagesback to topAlignments
The following features are aligned
Analyses
This mRNA is derived from or has results from the following analyses
Properties
Relationships
The following polypeptide feature(s) derives from this mRNA:
The following CDS feature(s) are a part of this mRNA:
Sequences
The following sequences are available for this feature:
protein sequence of mRNA_H-paniculata_contig20252.5237.1 >prot_H-paniculata_contig20252.5237.1 ID=prot_H-paniculata_contig20252.5237.1|Name=mRNA_H-paniculata_contig20252.5237.1|organism=Halopteris paniculata Hal_grac_a_UBK monoicous|type=polypeptide|length=87bp AISERAYLAEKNIEVLVKLKQGQDEVPRGAVVTDYSDSVLIPSAIVNHTNback to top mRNA from alignment at H-paniculata_contig20252:200..1314+ Legend: polypeptideCDS Hold the cursor over a type above to highlight its positions in the sequence below.>mRNA_H-paniculata_contig20252.5237.1 ID=mRNA_H-paniculata_contig20252.5237.1|Name=mRNA_H-paniculata_contig20252.5237.1|organism=Halopteris paniculata Hal_grac_a_UBK monoicous|type=mRNA|length=1115bp|location=Sequence derived from alignment at H-paniculata_contig20252:200..1314+ (Halopteris paniculata Hal_grac_a_UBK monoicous)back to top Coding sequence (CDS) from alignment at H-paniculata_contig20252:200..1314+ >mRNA_H-paniculata_contig20252.5237.1 ID=mRNA_H-paniculata_contig20252.5237.1|Name=mRNA_H-paniculata_contig20252.5237.1|organism=Halopteris paniculata Hal_grac_a_UBK monoicous|type=CDS|length=522bp|location=Sequence derived from alignment at H-paniculata_contig20252:200..1314+ (Halopteris paniculata Hal_grac_a_UBK monoicous)back to top |