mRNA_H-paniculata_contig20229.5224.1 (mRNA) Halopteris paniculata Hal_grac_a_UBK monoicous
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Overview
Homology
BLAST of mRNA_H-paniculata_contig20229.5224.1 vs. uniprot
Match: A0A6H5KD60_9PHAE (Uncharacterized protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5KD60_9PHAE) HSP 1 Score: 109 bits (273), Expect = 6.730e-26 Identity = 65/176 (36.93%), Postives = 99/176 (56.25%), Query Frame = 1
Query: 4 RAVTEIVQYLLHTMEWGITYG-GQGCGLSTEAYADSDFGACLDTRRSVSSGVVMLAKEAINGDSRMEEITASGTSE*EYVALSELVKGVVFNTQVQELMEPSMSIGVVNVFENNERAINLANNKHASRRTKHVDVKYCMVWDASDTGTFRLVYVRTQEKHADLRTKPLDMGHFYQH 528
RA I+ Y++ T + GIT+G G GLS E +AD+D+ + RRSVS G VM + I+ SR ++ T+E EYV+L++++K V+F QV M P + + VFE+N+ AI LA N ++ +KH DV++ + + + YV + +HAD TK L G F H
Sbjct: 110 RAGLGILGYVVRTSDLGITFGRGSVAGLSMEVFADADYASKAADRRSVSGGFVMCGRGCISWFSRTQQCVTLSTTEAEYVSLADVMKEVLFLRQVWRFMLPEAGMPCIPVFEDNQGAIQLAQNPISNSNSKHFDVRHHFIGELVGRKEISIFYVESAYQHADFLTKALHFGDFEFH 285
BLAST of mRNA_H-paniculata_contig20229.5224.1 vs. uniprot
Match: A0A6H5KN68_9PHAE (Integrase catalytic domain-containing protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5KN68_9PHAE) HSP 1 Score: 104 bits (259), Expect = 9.920e-23 Identity = 59/175 (33.71%), Postives = 98/175 (56.00%), Query Frame = 1
Query: 7 AVTEIVQYLLHTMEWGITYG-GQGCGLSTEAYADSDFGACLDTRRSVSSGVVMLAKEAINGDSRMEEITASGTSE*EYVALSELVKGVVFNTQVQELMEPSMSIGVVNVFENNERAINLANNKHASRRTKHVDVKYCMVWDASDTGTFRLVYVRTQEKHADLRTKPLDMGHFYQH 528
A +I+ Y T +GI++ G G S + YAD+DF + RRSVS G+V A++ SR ++ T+E EYVAL ++VK ++F Q+ M P + + + VFE+N+ AI LA N ++ +KH+DV++ +W+ ++ +++V + + AD TK L F H
Sbjct: 461 AAMDILGYARRTSHFGISFQRGTVEGFSLQGYADADFASKAADRRSVSGGIVTCGGGAVSWFSRTQKCVTLSTTEAEYVALGDVVKEILFLRQIWRFMLPQVGMPCIPVFEDNQGAIQLAQNPISNSNSKHIDVRHHFLWELAERKEISVIHVPSPYQRADFLTKSLSKDAFESH 635
BLAST of mRNA_H-paniculata_contig20229.5224.1 vs. uniprot
Match: A0A6H5JLN0_9PHAE (Reverse transcriptase Ty1/copia-type domain-containing protein n=3 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5JLN0_9PHAE) HSP 1 Score: 102 bits (255), Expect = 1.700e-22 Identity = 62/176 (35.23%), Postives = 98/176 (55.68%), Query Frame = 1
Query: 4 RAVTEIVQYLLHTMEWGITYG-GQGCGLSTEAYADSDFGACLDTRRSVSSGVVMLAKEAINGDSRMEEITASGTSE*EYVALSELVKGVVFNTQVQELMEPSMSIGVVNVFENNERAINLANNKHASRRTKHVDVKYCMVWDASDTGTFRLVYVRTQEKHADLRTKPLDMGHFYQH 528
RA I+ Y++ T + GIT+ G GLS E + D+D+ + RRSVS G+VM I+ SR ++ T+E EYV+L++++K V+F QV M P + + VFE+N+ AI LA N ++ +KH+DV++ + + + +V + +HAD TK L G F H
Sbjct: 255 RAGLGILGYVVRTSDLGITFRRGSVAGLSMEVFVDADYASKAADRRSVSGGLVMCGGGCISWFSRTQKCVTLSTTEAEYVSLADVMKEVLFLRQVWRFMLPEAGMPCIPVFEDNQGAIQLAQNPISNSNSKHIDVRHHFIRELVGRKEISIFHVESAYQHADFLTKALHAGDFEFH 430
BLAST of mRNA_H-paniculata_contig20229.5224.1 vs. uniprot
Match: A0A6H5JTK6_9PHAE (Uncharacterized protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5JTK6_9PHAE) HSP 1 Score: 100 bits (249), Expect = 1.860e-22 Identity = 60/176 (34.09%), Postives = 100/176 (56.82%), Query Frame = 1
Query: 4 RAVTEIVQYLLHTMEWGITYG-GQGCGLSTEAYADSDFGACLDTRRSVSSGVVMLAKEAINGDSRMEEITASGTSE*EYVALSELVKGVVFNTQVQELMEPSMSIGVVNVFENNERAINLANNKHASRRTKHVDVKYCMVWDASDTGTFRLVYVRTQEKHADLRTKPLDMGHFYQH 528
RA I+ Y++ T + GIT+ G GLS E +AD+D+ + RRSVS G+VM ++ SR ++ T+E EYV+L++++K V+F QV+ + P + + V E+N+ AI LA N ++ +KH+DV++ + + + +V + +HAD TK L+ G F H
Sbjct: 71 RAGLGILGYVVRTSDLGITFRRGSVAGLSMEVFADADYASKAADRRSVSGGLVMCGGGCMSWFSRTQKCVTLSTTEAEYVSLADVMKEVLFLRQVRRFVLPEAGMPCIPVLEDNQGAIQLAQNPISNSTSKHIDVRHHFIRELVRRKEISIFHVESAYQHADFLTKALNAGDFECH 246
BLAST of mRNA_H-paniculata_contig20229.5224.1 vs. uniprot
Match: A0A6H5KEZ8_9PHAE (Uncharacterized protein n=4 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5KEZ8_9PHAE) HSP 1 Score: 98.6 bits (244), Expect = 2.430e-22 Identity = 59/175 (33.71%), Postives = 96/175 (54.86%), Query Frame = 1
Query: 7 AVTEIVQYLLHTMEWGITYG-GQGCGLSTEAYADSDFGACLDTRRSVSSGVVMLAKEAINGDSRMEEITASGTSE*EYVALSELVKGVVFNTQVQELMEPSMSIGVVNVFENNERAINLANNKHASRRTKHVDVKYCMVWDASDTGTFRLVYVRTQEKHADLRTKPLDMGHFYQH 528
A +I+ Y T +GI++ G G S + YAD+DF + RRSVS G+V A++ SR ++ T+E EYVAL E+VK ++F Q+ M P + + + VFE+N+ AI LA N ++ +KH+DV++ + + + +++V + + AD TK L F H
Sbjct: 34 AAMDILGYARRTSHFGISFQRGTVEGFSLQGYADADFASKAADRRSVSGGIVTCGGGAVSWFSRTQKCVTLSTTEAEYVALGEVVKVILFLRQIWRFMLPQVGMPCIPVFEDNQGAIQLAQNPISNSNSKHIDVRHHFLRELVERKEISVIHVPSPYQRADFLTKSLSKDAFESH 208
BLAST of mRNA_H-paniculata_contig20229.5224.1 vs. uniprot
Match: A0A6H5KQB8_9PHAE (Reverse transcriptase Ty1/copia-type domain-containing protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5KQB8_9PHAE) HSP 1 Score: 102 bits (255), Expect = 3.330e-22 Identity = 62/176 (35.23%), Postives = 98/176 (55.68%), Query Frame = 1
Query: 4 RAVTEIVQYLLHTMEWGITYG-GQGCGLSTEAYADSDFGACLDTRRSVSSGVVMLAKEAINGDSRMEEITASGTSE*EYVALSELVKGVVFNTQVQELMEPSMSIGVVNVFENNERAINLANNKHASRRTKHVDVKYCMVWDASDTGTFRLVYVRTQEKHADLRTKPLDMGHFYQH 528
RA I+ Y++ T + GIT+ G GLS E + D+D+ + RRSVS G+VM I+ SR ++ T+E EYV+L++++K V+F QV M P + + VFE+N+ AI LA N ++ +KH+DV++ + + + +V + +HAD TK L G F H
Sbjct: 429 RAGLGILGYVVRTSDLGITFRRGSVAGLSMEVFVDADYASKAADRRSVSGGLVMCGGGCISWFSRTQKCVTLSTTEAEYVSLADVMKEVLFLRQVWRFMLPEAGMPCIPVFEDNQGAIQLAQNPISNSNSKHIDVRHHFIRELVGRKEISIFHVESAYQHADFLTKALHAGDFEFH 604
BLAST of mRNA_H-paniculata_contig20229.5224.1 vs. uniprot
Match: A0A6H5K3J6_9PHAE (Uncharacterized protein n=2 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5K3J6_9PHAE) HSP 1 Score: 96.3 bits (238), Expect = 8.110e-22 Identity = 57/165 (34.55%), Postives = 91/165 (55.15%), Query Frame = 1
Query: 28 YLLHTMEWGITYG-GQGCGLSTEAYADSDFGACLDTRRSVSSGVVMLAKEAINGDSRMEEITASGTSE*EYVALSELVKGVVFNTQVQELMEPSMSIGVVNVFENNERAINLANNKHASRRTKHVDVKYCMVWDASDTGTFRLVYVRTQEKHADLRTKPLDMGHF 519
Y++ T + IT+ G GLS E +AD D+ R+SVS G+VM I+G SR ++ T+E EYV+L++++K V+F QV M P + + VFE+N+ AI LA N ++ KH+DV++ + + +V + +HAD TK + +G F
Sbjct: 2 YVVRTSDLVITFRRGSAAGLSMEVFADPDYVCKAADRKSVSGGLVMCGGGCISGFSRTQKCVTLSTTEAEYVSLADVMKEVLFLRQVWRFMLPEAGMPCIPVFEDNQGAIQLAQNPISNSNPKHIDVRHHFIRELVGRKEISSFHVESAYQHADFLTKAIHVGDF 166
BLAST of mRNA_H-paniculata_contig20229.5224.1 vs. uniprot
Match: A0A6H5K2R1_9PHAE (Integrase catalytic domain-containing protein n=3 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5K2R1_9PHAE) HSP 1 Score: 101 bits (251), Expect = 1.310e-21 Identity = 61/176 (34.66%), Postives = 98/176 (55.68%), Query Frame = 1
Query: 4 RAVTEIVQYLLHTMEWGITYG-GQGCGLSTEAYADSDFGACLDTRRSVSSGVVMLAKEAINGDSRMEEITASGTSE*EYVALSELVKGVVFNTQVQELMEPSMSIGVVNVFENNERAINLANNKHASRRTKHVDVKYCMVWDASDTGTFRLVYVRTQEKHADLRTKPLDMGHFYQH 528
RA I+ Y++ T + GIT+ G GLS E + D+D+ + RRSVS G+VM I+ SR ++ T+E EYV+L++++K V+F QV M P + + VFE+N+ AI LA N ++ +KH+DV++ + + + +V + +HA+ TK L G F H
Sbjct: 950 RAGLGILGYVVRTSDLGITFRRGSVAGLSMEVFVDADYASKAADRRSVSGGLVMCGGGCISWFSRTQKCVTLSTTEAEYVSLADVMKEVLFLRQVWRFMLPEAGMPCIPVFEDNQGAIQLAQNPISNSNSKHIDVRHHFIRELVGRKEISIFHVESAYQHAEFLTKALHAGDFEFH 1125
BLAST of mRNA_H-paniculata_contig20229.5224.1 vs. uniprot
Match: A0A6H5LC04_9PHAE (Uncharacterized protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5LC04_9PHAE) HSP 1 Score: 100 bits (250), Expect = 1.790e-21 Identity = 59/176 (33.52%), Postives = 100/176 (56.82%), Query Frame = 1
Query: 4 RAVTEIVQYLLHTMEWGITYG-GQGCGLSTEAYADSDFGACLDTRRSVSSGVVMLAKEAINGDSRMEEITASGTSE*EYVALSELVKGVVFNTQVQELMEPSMSIGVVNVFENNERAINLANNKHASRRTKHVDVKYCMVWDASDTGTFRLVYVRTQEKHADLRTKPLDMGHFYQH 528
RA I+ Y++ T + GIT+G G LS E + D+D+ + RRSVS G+VM I+ SR ++ T+E EYV++++++K ++F +V M P + + VFE+N+RA+ LA N ++ +KH+DV++ + + + +V + +HAD TK L +G F H
Sbjct: 946 RAGLGILGYVVRTSDLGITFGRGSVAMLSMEVFGDADYASKAADRRSVSGGLVMCGGGCISWFSRTQKCVTLSTTEAEYVSVADVMKELLFLRKVWRFMLPEAGMPCIPVFEDNQRALQLAQNPISNSNSKHIDVRHHSIRELVGREEISIFHVESAYQHADFLTKALHVGDFEFH 1121
BLAST of mRNA_H-paniculata_contig20229.5224.1 vs. uniprot
Match: A0A6H5L8D6_9PHAE (Uncharacterized protein n=2 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5L8D6_9PHAE) HSP 1 Score: 99.8 bits (247), Expect = 2.090e-21 Identity = 60/175 (34.29%), Postives = 97/175 (55.43%), Query Frame = 1
Query: 7 AVTEIVQYLLHTMEWGITYG-GQGCGLSTEAYADSDFGACLDTRRSVSSGVVMLAKEAINGDSRMEEITASGTSE*EYVALSELVKGVVFNTQVQELMEPSMSIGVVNVFENNERAINLANNKHASRRTKHVDVKYCMVWDASDTGTFRLVYVRTQEKHADLRTKPLDMGHFYQH 528
A +I+ Y T ++GI++ G GLS + YAD+DF RRSVS G+V A++ SR ++ T+E EYVAL ++VK ++F Q M P + + + +FE+N+ AI LA N ++ +KHVDV++ +V + + +++V + + AD TK L F H
Sbjct: 247 AAMDILGYARRTSQFGISFQRGTVEGLSLQGYADADFATKAADRRSVSGGIVTCGGGAVSWFSRTQKCVTLSTTEAEYVALGDVVKEILFLRQFWRFMLPQVGMPCIPIFEDNQGAIQLAQNPISNSNSKHVDVRHHLVRELVERKEISVIHVPRRYQRADFLTKSLPKDAFESH 421 The following BLAST results are available for this feature:
BLAST of mRNA_H-paniculata_contig20229.5224.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 vs UniRef90) Total hits: 25
Pagesback to topAlignments
The following features are aligned
Analyses
This mRNA is derived from or has results from the following analyses
Properties
Relationships
The following UTR feature(s) are a part of this mRNA:
The following CDS feature(s) are a part of this mRNA:
The following polypeptide feature(s) derives from this mRNA:
Sequences
The following sequences are available for this feature:
protein sequence of mRNA_H-paniculata_contig20229.5224.1 >prot_H-paniculata_contig20229.5224.1 ID=prot_H-paniculata_contig20229.5224.1|Name=mRNA_H-paniculata_contig20229.5224.1|organism=Halopteris paniculata Hal_grac_a_UBK monoicous|type=polypeptide|length=80bp MEPSMSIGVVNVFENNERAINLANNKHASRRTKHVDVKYCMVWDASDTGTback to top mRNA from alignment at H-paniculata_contig20229:1649..2182+ Legend: UTRpolypeptideCDS Hold the cursor over a type above to highlight its positions in the sequence below.>mRNA_H-paniculata_contig20229.5224.1 ID=mRNA_H-paniculata_contig20229.5224.1|Name=mRNA_H-paniculata_contig20229.5224.1|organism=Halopteris paniculata Hal_grac_a_UBK monoicous|type=mRNA|length=534bp|location=Sequence derived from alignment at H-paniculata_contig20229:1649..2182+ (Halopteris paniculata Hal_grac_a_UBK monoicous)back to top Coding sequence (CDS) from alignment at H-paniculata_contig20229:1649..2182+ >mRNA_H-paniculata_contig20229.5224.1 ID=mRNA_H-paniculata_contig20229.5224.1|Name=mRNA_H-paniculata_contig20229.5224.1|organism=Halopteris paniculata Hal_grac_a_UBK monoicous|type=CDS|length=480bp|location=Sequence derived from alignment at H-paniculata_contig20229:1649..2182+ (Halopteris paniculata Hal_grac_a_UBK monoicous)back to top |