mRNA_H-paniculata_contig20229.5224.1 (mRNA) Halopteris paniculata Hal_grac_a_UBK monoicous

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_H-paniculata_contig20229.5224.1
Unique NamemRNA_H-paniculata_contig20229.5224.1
TypemRNA
OrganismHalopteris paniculata Hal_grac_a_UBK monoicous (Halopteris paniculata Hal_grac_a_UBK monoicous)
Homology
BLAST of mRNA_H-paniculata_contig20229.5224.1 vs. uniprot
Match: A0A6H5KD60_9PHAE (Uncharacterized protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5KD60_9PHAE)

HSP 1 Score: 109 bits (273), Expect = 6.730e-26
Identity = 65/176 (36.93%), Postives = 99/176 (56.25%), Query Frame = 1
Query:    4 RAVTEIVQYLLHTMEWGITYG-GQGCGLSTEAYADSDFGACLDTRRSVSSGVVMLAKEAINGDSRMEEITASGTSE*EYVALSELVKGVVFNTQVQELMEPSMSIGVVNVFENNERAINLANNKHASRRTKHVDVKYCMVWDASDTGTFRLVYVRTQEKHADLRTKPLDMGHFYQH 528
            RA   I+ Y++ T + GIT+G G   GLS E +AD+D+ +    RRSVS G VM  +  I+  SR ++     T+E EYV+L++++K V+F  QV   M P   +  + VFE+N+ AI LA N  ++  +KH DV++  + +        + YV +  +HAD  TK L  G F  H
Sbjct:  110 RAGLGILGYVVRTSDLGITFGRGSVAGLSMEVFADADYASKAADRRSVSGGFVMCGRGCISWFSRTQQCVTLSTTEAEYVSLADVMKEVLFLRQVWRFMLPEAGMPCIPVFEDNQGAIQLAQNPISNSNSKHFDVRHHFIGELVGRKEISIFYVESAYQHADFLTKALHFGDFEFH 285          
BLAST of mRNA_H-paniculata_contig20229.5224.1 vs. uniprot
Match: A0A6H5KN68_9PHAE (Integrase catalytic domain-containing protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5KN68_9PHAE)

HSP 1 Score: 104 bits (259), Expect = 9.920e-23
Identity = 59/175 (33.71%), Postives = 98/175 (56.00%), Query Frame = 1
Query:    7 AVTEIVQYLLHTMEWGITYG-GQGCGLSTEAYADSDFGACLDTRRSVSSGVVMLAKEAINGDSRMEEITASGTSE*EYVALSELVKGVVFNTQVQELMEPSMSIGVVNVFENNERAINLANNKHASRRTKHVDVKYCMVWDASDTGTFRLVYVRTQEKHADLRTKPLDMGHFYQH 528
            A  +I+ Y   T  +GI++  G   G S + YAD+DF +    RRSVS G+V     A++  SR ++     T+E EYVAL ++VK ++F  Q+   M P + +  + VFE+N+ AI LA N  ++  +KH+DV++  +W+ ++     +++V +  + AD  TK L    F  H
Sbjct:  461 AAMDILGYARRTSHFGISFQRGTVEGFSLQGYADADFASKAADRRSVSGGIVTCGGGAVSWFSRTQKCVTLSTTEAEYVALGDVVKEILFLRQIWRFMLPQVGMPCIPVFEDNQGAIQLAQNPISNSNSKHIDVRHHFLWELAERKEISVIHVPSPYQRADFLTKSLSKDAFESH 635          
BLAST of mRNA_H-paniculata_contig20229.5224.1 vs. uniprot
Match: A0A6H5JLN0_9PHAE (Reverse transcriptase Ty1/copia-type domain-containing protein n=3 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5JLN0_9PHAE)

HSP 1 Score: 102 bits (255), Expect = 1.700e-22
Identity = 62/176 (35.23%), Postives = 98/176 (55.68%), Query Frame = 1
Query:    4 RAVTEIVQYLLHTMEWGITYG-GQGCGLSTEAYADSDFGACLDTRRSVSSGVVMLAKEAINGDSRMEEITASGTSE*EYVALSELVKGVVFNTQVQELMEPSMSIGVVNVFENNERAINLANNKHASRRTKHVDVKYCMVWDASDTGTFRLVYVRTQEKHADLRTKPLDMGHFYQH 528
            RA   I+ Y++ T + GIT+  G   GLS E + D+D+ +    RRSVS G+VM     I+  SR ++     T+E EYV+L++++K V+F  QV   M P   +  + VFE+N+ AI LA N  ++  +KH+DV++  + +        + +V +  +HAD  TK L  G F  H
Sbjct:  255 RAGLGILGYVVRTSDLGITFRRGSVAGLSMEVFVDADYASKAADRRSVSGGLVMCGGGCISWFSRTQKCVTLSTTEAEYVSLADVMKEVLFLRQVWRFMLPEAGMPCIPVFEDNQGAIQLAQNPISNSNSKHIDVRHHFIRELVGRKEISIFHVESAYQHADFLTKALHAGDFEFH 430          
BLAST of mRNA_H-paniculata_contig20229.5224.1 vs. uniprot
Match: A0A6H5JTK6_9PHAE (Uncharacterized protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5JTK6_9PHAE)

HSP 1 Score: 100 bits (249), Expect = 1.860e-22
Identity = 60/176 (34.09%), Postives = 100/176 (56.82%), Query Frame = 1
Query:    4 RAVTEIVQYLLHTMEWGITYG-GQGCGLSTEAYADSDFGACLDTRRSVSSGVVMLAKEAINGDSRMEEITASGTSE*EYVALSELVKGVVFNTQVQELMEPSMSIGVVNVFENNERAINLANNKHASRRTKHVDVKYCMVWDASDTGTFRLVYVRTQEKHADLRTKPLDMGHFYQH 528
            RA   I+ Y++ T + GIT+  G   GLS E +AD+D+ +    RRSVS G+VM     ++  SR ++     T+E EYV+L++++K V+F  QV+  + P   +  + V E+N+ AI LA N  ++  +KH+DV++  + +        + +V +  +HAD  TK L+ G F  H
Sbjct:   71 RAGLGILGYVVRTSDLGITFRRGSVAGLSMEVFADADYASKAADRRSVSGGLVMCGGGCMSWFSRTQKCVTLSTTEAEYVSLADVMKEVLFLRQVRRFVLPEAGMPCIPVLEDNQGAIQLAQNPISNSTSKHIDVRHHFIRELVRRKEISIFHVESAYQHADFLTKALNAGDFECH 246          
BLAST of mRNA_H-paniculata_contig20229.5224.1 vs. uniprot
Match: A0A6H5KEZ8_9PHAE (Uncharacterized protein n=4 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5KEZ8_9PHAE)

HSP 1 Score: 98.6 bits (244), Expect = 2.430e-22
Identity = 59/175 (33.71%), Postives = 96/175 (54.86%), Query Frame = 1
Query:    7 AVTEIVQYLLHTMEWGITYG-GQGCGLSTEAYADSDFGACLDTRRSVSSGVVMLAKEAINGDSRMEEITASGTSE*EYVALSELVKGVVFNTQVQELMEPSMSIGVVNVFENNERAINLANNKHASRRTKHVDVKYCMVWDASDTGTFRLVYVRTQEKHADLRTKPLDMGHFYQH 528
            A  +I+ Y   T  +GI++  G   G S + YAD+DF +    RRSVS G+V     A++  SR ++     T+E EYVAL E+VK ++F  Q+   M P + +  + VFE+N+ AI LA N  ++  +KH+DV++  + +  +     +++V +  + AD  TK L    F  H
Sbjct:   34 AAMDILGYARRTSHFGISFQRGTVEGFSLQGYADADFASKAADRRSVSGGIVTCGGGAVSWFSRTQKCVTLSTTEAEYVALGEVVKVILFLRQIWRFMLPQVGMPCIPVFEDNQGAIQLAQNPISNSNSKHIDVRHHFLRELVERKEISVIHVPSPYQRADFLTKSLSKDAFESH 208          
BLAST of mRNA_H-paniculata_contig20229.5224.1 vs. uniprot
Match: A0A6H5KQB8_9PHAE (Reverse transcriptase Ty1/copia-type domain-containing protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5KQB8_9PHAE)

HSP 1 Score: 102 bits (255), Expect = 3.330e-22
Identity = 62/176 (35.23%), Postives = 98/176 (55.68%), Query Frame = 1
Query:    4 RAVTEIVQYLLHTMEWGITYG-GQGCGLSTEAYADSDFGACLDTRRSVSSGVVMLAKEAINGDSRMEEITASGTSE*EYVALSELVKGVVFNTQVQELMEPSMSIGVVNVFENNERAINLANNKHASRRTKHVDVKYCMVWDASDTGTFRLVYVRTQEKHADLRTKPLDMGHFYQH 528
            RA   I+ Y++ T + GIT+  G   GLS E + D+D+ +    RRSVS G+VM     I+  SR ++     T+E EYV+L++++K V+F  QV   M P   +  + VFE+N+ AI LA N  ++  +KH+DV++  + +        + +V +  +HAD  TK L  G F  H
Sbjct:  429 RAGLGILGYVVRTSDLGITFRRGSVAGLSMEVFVDADYASKAADRRSVSGGLVMCGGGCISWFSRTQKCVTLSTTEAEYVSLADVMKEVLFLRQVWRFMLPEAGMPCIPVFEDNQGAIQLAQNPISNSNSKHIDVRHHFIRELVGRKEISIFHVESAYQHADFLTKALHAGDFEFH 604          
BLAST of mRNA_H-paniculata_contig20229.5224.1 vs. uniprot
Match: A0A6H5K3J6_9PHAE (Uncharacterized protein n=2 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5K3J6_9PHAE)

HSP 1 Score: 96.3 bits (238), Expect = 8.110e-22
Identity = 57/165 (34.55%), Postives = 91/165 (55.15%), Query Frame = 1
Query:   28 YLLHTMEWGITYG-GQGCGLSTEAYADSDFGACLDTRRSVSSGVVMLAKEAINGDSRMEEITASGTSE*EYVALSELVKGVVFNTQVQELMEPSMSIGVVNVFENNERAINLANNKHASRRTKHVDVKYCMVWDASDTGTFRLVYVRTQEKHADLRTKPLDMGHF 519
            Y++ T +  IT+  G   GLS E +AD D+      R+SVS G+VM     I+G SR ++     T+E EYV+L++++K V+F  QV   M P   +  + VFE+N+ AI LA N  ++   KH+DV++  + +          +V +  +HAD  TK + +G F
Sbjct:    2 YVVRTSDLVITFRRGSAAGLSMEVFADPDYVCKAADRKSVSGGLVMCGGGCISGFSRTQKCVTLSTTEAEYVSLADVMKEVLFLRQVWRFMLPEAGMPCIPVFEDNQGAIQLAQNPISNSNPKHIDVRHHFIRELVGRKEISSFHVESAYQHADFLTKAIHVGDF 166          
BLAST of mRNA_H-paniculata_contig20229.5224.1 vs. uniprot
Match: A0A6H5K2R1_9PHAE (Integrase catalytic domain-containing protein n=3 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5K2R1_9PHAE)

HSP 1 Score: 101 bits (251), Expect = 1.310e-21
Identity = 61/176 (34.66%), Postives = 98/176 (55.68%), Query Frame = 1
Query:    4 RAVTEIVQYLLHTMEWGITYG-GQGCGLSTEAYADSDFGACLDTRRSVSSGVVMLAKEAINGDSRMEEITASGTSE*EYVALSELVKGVVFNTQVQELMEPSMSIGVVNVFENNERAINLANNKHASRRTKHVDVKYCMVWDASDTGTFRLVYVRTQEKHADLRTKPLDMGHFYQH 528
            RA   I+ Y++ T + GIT+  G   GLS E + D+D+ +    RRSVS G+VM     I+  SR ++     T+E EYV+L++++K V+F  QV   M P   +  + VFE+N+ AI LA N  ++  +KH+DV++  + +        + +V +  +HA+  TK L  G F  H
Sbjct:  950 RAGLGILGYVVRTSDLGITFRRGSVAGLSMEVFVDADYASKAADRRSVSGGLVMCGGGCISWFSRTQKCVTLSTTEAEYVSLADVMKEVLFLRQVWRFMLPEAGMPCIPVFEDNQGAIQLAQNPISNSNSKHIDVRHHFIRELVGRKEISIFHVESAYQHAEFLTKALHAGDFEFH 1125          
BLAST of mRNA_H-paniculata_contig20229.5224.1 vs. uniprot
Match: A0A6H5LC04_9PHAE (Uncharacterized protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5LC04_9PHAE)

HSP 1 Score: 100 bits (250), Expect = 1.790e-21
Identity = 59/176 (33.52%), Postives = 100/176 (56.82%), Query Frame = 1
Query:    4 RAVTEIVQYLLHTMEWGITYG-GQGCGLSTEAYADSDFGACLDTRRSVSSGVVMLAKEAINGDSRMEEITASGTSE*EYVALSELVKGVVFNTQVQELMEPSMSIGVVNVFENNERAINLANNKHASRRTKHVDVKYCMVWDASDTGTFRLVYVRTQEKHADLRTKPLDMGHFYQH 528
            RA   I+ Y++ T + GIT+G G    LS E + D+D+ +    RRSVS G+VM     I+  SR ++     T+E EYV++++++K ++F  +V   M P   +  + VFE+N+RA+ LA N  ++  +KH+DV++  + +        + +V +  +HAD  TK L +G F  H
Sbjct:  946 RAGLGILGYVVRTSDLGITFGRGSVAMLSMEVFGDADYASKAADRRSVSGGLVMCGGGCISWFSRTQKCVTLSTTEAEYVSVADVMKELLFLRKVWRFMLPEAGMPCIPVFEDNQRALQLAQNPISNSNSKHIDVRHHSIRELVGREEISIFHVESAYQHADFLTKALHVGDFEFH 1121          
BLAST of mRNA_H-paniculata_contig20229.5224.1 vs. uniprot
Match: A0A6H5L8D6_9PHAE (Uncharacterized protein n=2 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5L8D6_9PHAE)

HSP 1 Score: 99.8 bits (247), Expect = 2.090e-21
Identity = 60/175 (34.29%), Postives = 97/175 (55.43%), Query Frame = 1
Query:    7 AVTEIVQYLLHTMEWGITYG-GQGCGLSTEAYADSDFGACLDTRRSVSSGVVMLAKEAINGDSRMEEITASGTSE*EYVALSELVKGVVFNTQVQELMEPSMSIGVVNVFENNERAINLANNKHASRRTKHVDVKYCMVWDASDTGTFRLVYVRTQEKHADLRTKPLDMGHFYQH 528
            A  +I+ Y   T ++GI++  G   GLS + YAD+DF      RRSVS G+V     A++  SR ++     T+E EYVAL ++VK ++F  Q    M P + +  + +FE+N+ AI LA N  ++  +KHVDV++ +V +  +     +++V  + + AD  TK L    F  H
Sbjct:  247 AAMDILGYARRTSQFGISFQRGTVEGLSLQGYADADFATKAADRRSVSGGIVTCGGGAVSWFSRTQKCVTLSTTEAEYVALGDVVKEILFLRQFWRFMLPQVGMPCIPIFEDNQGAIQLAQNPISNSNSKHVDVRHHLVRELVERKEISVIHVPRRYQRADFLTKSLPKDAFESH 421          
The following BLAST results are available for this feature:
BLAST of mRNA_H-paniculata_contig20229.5224.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 vs UniRef90)
Total hits: 25
Match NameE-valueIdentityDescription
A0A6H5KD60_9PHAE6.730e-2636.93Uncharacterized protein n=1 Tax=Ectocarpus sp. CCA... [more]
A0A6H5KN68_9PHAE9.920e-2333.71Integrase catalytic domain-containing protein n=1 ... [more]
A0A6H5JLN0_9PHAE1.700e-2235.23Reverse transcriptase Ty1/copia-type domain-contai... [more]
A0A6H5JTK6_9PHAE1.860e-2234.09Uncharacterized protein n=1 Tax=Ectocarpus sp. CCA... [more]
A0A6H5KEZ8_9PHAE2.430e-2233.71Uncharacterized protein n=4 Tax=Ectocarpus sp. CCA... [more]
A0A6H5KQB8_9PHAE3.330e-2235.23Reverse transcriptase Ty1/copia-type domain-contai... [more]
A0A6H5K3J6_9PHAE8.110e-2234.55Uncharacterized protein n=2 Tax=Ectocarpus sp. CCA... [more]
A0A6H5K2R1_9PHAE1.310e-2134.66Integrase catalytic domain-containing protein n=3 ... [more]
A0A6H5LC04_9PHAE1.790e-2133.52Uncharacterized protein n=1 Tax=Ectocarpus sp. CCA... [more]
A0A6H5L8D6_9PHAE2.090e-2134.29Uncharacterized protein n=2 Tax=Ectocarpus sp. CCA... [more]

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Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
H-paniculata_contig20229contigH-paniculata_contig20229:1649..2182 +
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 vs UniRef902022-09-19
OGS1.0 of Halopteris paniculata Hal_grac_a_UBK monoicous2021-02-24
Properties
Property NameValue
Hectar predicted targeting categoryother localisation
Exons1
Model size534
Cds size240
Stop1
Start1
Relationships

The following UTR feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1622929522.7920365-UTR-H-paniculata_contig20229:1648..19421622929522.7920365-UTR-H-paniculata_contig20229:1648..1942Halopteris paniculata Hal_grac_a_UBK monoicousUTRH-paniculata_contig20229 1649..1942 +
1691480897.429295-UTR-H-paniculata_contig20229:1648..19421691480897.429295-UTR-H-paniculata_contig20229:1648..1942Halopteris paniculata Hal_grac_a_UBK monoicousUTRH-paniculata_contig20229 1649..1942 +


The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1622929522.8135827-CDS-H-paniculata_contig20229:1942..21821622929522.8135827-CDS-H-paniculata_contig20229:1942..2182Halopteris paniculata Hal_grac_a_UBK monoicousCDSH-paniculata_contig20229 1943..2182 +
1691480897.442001-CDS-H-paniculata_contig20229:1942..21821691480897.442001-CDS-H-paniculata_contig20229:1942..2182Halopteris paniculata Hal_grac_a_UBK monoicousCDSH-paniculata_contig20229 1943..2182 +


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_H-paniculata_contig20229.5224.1prot_H-paniculata_contig20229.5224.1Halopteris paniculata Hal_grac_a_UBK monoicouspolypeptideH-paniculata_contig20229 1943..2182 +


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_H-paniculata_contig20229.5224.1

>prot_H-paniculata_contig20229.5224.1 ID=prot_H-paniculata_contig20229.5224.1|Name=mRNA_H-paniculata_contig20229.5224.1|organism=Halopteris paniculata Hal_grac_a_UBK monoicous|type=polypeptide|length=80bp
MEPSMSIGVVNVFENNERAINLANNKHASRRTKHVDVKYCMVWDASDTGT
FRLVYVRTQEKHADLRTKPLDMGHFYQHA*
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mRNA from alignment at H-paniculata_contig20229:1649..2182+

Legend: UTRpolypeptideCDS
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_H-paniculata_contig20229.5224.1 ID=mRNA_H-paniculata_contig20229.5224.1|Name=mRNA_H-paniculata_contig20229.5224.1|organism=Halopteris paniculata Hal_grac_a_UBK monoicous|type=mRNA|length=534bp|location=Sequence derived from alignment at H-paniculata_contig20229:1649..2182+ (Halopteris paniculata Hal_grac_a_UBK monoicous)
AAGAGGGCGGTGACTGAGATAGTGCAGTATTTATTACACACGATGGAATG GGGCATCACATATGGTGGACAAGGCTGTGGGCTTAGCACGGAAGCATATG CAGACTCGGATTTCGGAGCCTGCTTGGATACTAGACGCTCGGTATCTAGT GGCGTCGTGATGTTGGCGAAGGAGGCGATCAACGGGGACTCTAGGATGGA AGAGATAACGGCGTCGGGTACTTCGGAATAAGAGTACGTAGCACTGTCGG AATTAGTAAAGGGTGTGGTGTTTAACACGCAGGTACAAGAGTTAATGGAG CCAAGTATGAGTATCGGAGTGGTGAACGTGTTCGAGAACAACGAGAGGGC TATCAATCTAGCGAACAATAAGCATGCTAGCCGTAGGACAAAGCACGTAG ATGTTAAATATTGTATGGTGTGGGACGCGTCGGATACCGGAACGTTTAGG CTAGTCTACGTGCGGACGCAAGAAAAACACGCGGATCTACGCACAAAGCC ACTGGATATGGGTCATTTCTACCAACATGCATAA
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Coding sequence (CDS) from alignment at H-paniculata_contig20229:1649..2182+

>mRNA_H-paniculata_contig20229.5224.1 ID=mRNA_H-paniculata_contig20229.5224.1|Name=mRNA_H-paniculata_contig20229.5224.1|organism=Halopteris paniculata Hal_grac_a_UBK monoicous|type=CDS|length=480bp|location=Sequence derived from alignment at H-paniculata_contig20229:1649..2182+ (Halopteris paniculata Hal_grac_a_UBK monoicous)
ATGGAGCCAAGTATGAGTATCGGAGTGGTGAACGTGTTCGAGAACAACGA
GAGGGCTATCAATCTAGCGAACAATAAGCATGCTAGCCGTAGGACAAAGC
ACGTAGATGTTAAATATTGTATGGTGTGGGACGCGTCGGATACCGGAACG
TTTAGGCTAGTCTACGTGCGGACGCAAGAAAAACACGCGGATCTACGCAC
AAAGCCACTGGATATGGGTCATTTCTACCAACATGCATAAATGGAGCCAA
GTATGAGTATCGGAGTGGTGAACGTGTTCGAGAACAACGAGAGGGCTATC
AATCTAGCGAACAATAAGCATGCTAGCCGTAGGACAAAGCACGTAGATGT
TAAATATTGTATGGTGTGGGACGCGTCGGATACCGGAACGTTTAGGCTAG
TCTACGTGCGGACGCAAGAAAAACACGCGGATCTACGCACAAAGCCACTG
GATATGGGTCATTTCTACCAACATGCATAA
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