mRNA_H-paniculata_contig20228.5223.1 (mRNA) Halopteris paniculata Hal_grac_a_UBK monoicous

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_H-paniculata_contig20228.5223.1
Unique NamemRNA_H-paniculata_contig20228.5223.1
TypemRNA
OrganismHalopteris paniculata Hal_grac_a_UBK monoicous (Halopteris paniculata Hal_grac_a_UBK monoicous)
Homology
BLAST of mRNA_H-paniculata_contig20228.5223.1 vs. uniprot
Match: A0A6H5JTC6_9PHAE (DDE Tnp4 domain-containing protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5JTC6_9PHAE)

HSP 1 Score: 168 bits (425), Expect = 1.960e-45
Identity = 86/223 (38.57%), Postives = 124/223 (55.61%), Query Frame = 2
Query:  347 LSHTRQR*TTRGGYLG*RKGIAEAVNDKSIVRFDKTVQAVKEGEPYRSMAYKLRDKDGVKQVEKGLYFIVDGEYHRWRSLVCPTTEAATRDELVWSKRLESVRKDLEWFFGILKGRFRILKLPITFRESAQVDNVVCTCCILHNMLHSFDGLKLHEPDMDWAGPDGLVDTWLHEDRKMNFGTNGRNSNGPPERVE------DMRRRLVTHYTYRVENNEVAWL 997
            + HT++      G+ G       + NDKSI+R+D  V  ++E   Y    + + + DG     KG Y +VD  YH+W +L+ P+     +++L +SKRLESVRKD+E FFGI+KG FRILKL I + +   +DNV  TCCILHNMLHS+D     E + +WAG  GL + W H           + S+   E VE        R++L+  + YR   N++AWL
Sbjct:   25 VDHTKRVLAVTPGFTG-------STNDKSIIRYDTAVTKIREDPIYSEKEFTVYEADGTPYQLKGCYLLVDNGYHKWVTLIPPSKYPIDQNDLAFSKRLESVRKDVECFFGIVKGLFRILKLSIPYHKQEDIDNVFFTCCILHNMLHSYDNKSEMEEEPNWAGNAGLHNAWEHNPSLDLSSVGAKGSSASTEDVEVESGFNTRRKQLIASFVYRKSKNDIAWL 240          
BLAST of mRNA_H-paniculata_contig20228.5223.1 vs. uniprot
Match: A0A6H5JAU4_9PHAE (Uncharacterized protein n=2 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5JAU4_9PHAE)

HSP 1 Score: 171 bits (432), Expect = 6.100e-44
Identity = 87/223 (39.01%), Postives = 125/223 (56.05%), Query Frame = 2
Query:  347 LSHTRQR*TTRGGYLG*RKGIAEAVNDKSIVRFDKTVQAVKEGEPYRSMAYKLRDKDGVKQVEKGLYFIVDGEYHRWRSLVCPTTEAATRDELVWSKRLESVRKDLEWFFGILKGRFRILKLPITFRESAQVDNVVCTCCILHNMLHSFDGLKLHEPDMDWAGPDGLVDTWLHEDRKMNFGTNGRNSNGPPERVE------DMRRRLVTHYTYRVENNEVAWL 997
            + HT++      G+ G       + NDKSI+R+D  V  ++E   Y    + + + DG     KG Y +VD  YH+W +L+ P+     +++L +SKRLESVRKD+E FFGI+KGRFRILKL I + +   +DNV  TCCILHNMLHS+D     E + +WAG  GL + W H           + S+   E VE        R++L+  + YR   N++AWL
Sbjct:  266 VDHTKRVLAVTPGFTG-------STNDKSIIRYDTAVTKIREDPIYSEKEFTVYEADGTPYQLKGCYLLVDNGYHKWVTLIPPSKYPIDQNDLAFSKRLESVRKDVECFFGIVKGRFRILKLSIPYHKQEDIDNVFFTCCILHNMLHSYDNKSEMEEEPNWAGNAGLHNAWEHNPSLDLSSVGAKGSSASTEDVEVESGFNTRRKQLIASFVYRKSKNDIAWL 481          
BLAST of mRNA_H-paniculata_contig20228.5223.1 vs. uniprot
Match: A0A6H5KY50_9PHAE (Uncharacterized protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5KY50_9PHAE)

HSP 1 Score: 168 bits (425), Expect = 1.320e-43
Identity = 92/213 (43.19%), Postives = 126/213 (59.15%), Query Frame = 2
Query:  380 GGYLG*RKGIAEAVNDKSIVRFDKTVQAVKEGEPYRSMAYKLRDKDGVKQVEKGLYFIVDGEYHRWRSLVCPTTEAATRDELVWSKRLESVRKDLEWFFGILKGRFRILKLPITFRESAQVDNVVCTCCILHNMLHSFDGLKLHEPDMDWAGPDGLVDTWLHEDRKMNFGTNGRNSNGPPERVE------DMRRRLVTHYTYRVENN-EVAWL 997
            G  L   +G   A NDK+I+R+DK V  ++    Y    YKL  +DG +  EKG Y +VD  YH+WR+L+ P+     R +L++SKRLES RKD+E +FGILKGRFRI KL I F +   +DNV  TCCILHNMLHSFD       + +WAG  GL +     D   ++ + G + +G  E VE       +R +LVT++ YR E   ++ WL
Sbjct:  195 GRVLAVTRGFTGATNDKTIIRYDKAVTRIRTDPVYTEQKYKLYAQDGQQFEEKGCYLLVDNGYHKWRTLIPPSKCPIDRGDLIFSKRLESARKDVECYFGILKGRFRINKLAIGFHKQEYIDNVFFTCCILHNMLHSFDNRGDMSEEPNWAGSAGLHNA-ADRDPNTDYSSVG-SMDGQHEAVEVETGFGALRSKLVTNFVYRREKKRDIVWL 405          
BLAST of mRNA_H-paniculata_contig20228.5223.1 vs. uniprot
Match: A0A6H5JQM6_9PHAE (Uncharacterized protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5JQM6_9PHAE)

HSP 1 Score: 163 bits (412), Expect = 2.420e-43
Identity = 81/227 (35.68%), Postives = 122/227 (53.74%), Query Frame = 2
Query:  380 GGYLG*RKGIAEAVNDKSIVRFDKTVQAVKEGEPYRSMAYKLRDKDGVKQVEKGLYFIVDGEYHRWRSLVCPTTEAATRDELVWSKRLESVRKDLEWFFGILKGRFRILKLPITFRESAQVDNVVCTCCILHNMLHSFDGLKLHEPDMDWAGPDGLVDTWLH---------------------EDRKMNFGTNGRNSNGPPERVEDMRRRLVTHYTYRVENNEVAWL 997
            G  L    G   A NDK+I+R+D  V  ++    Y    YKLR  +G ++  +G + I+D  YH W +L+ P+    +  +  +S+ LESVRKD+E FFGILKGRFRILKL + + +   +DN+  TCCILHNMLH+FDGL + + + DW G  G  D W H                     E+ +   G + R    P     +++R+L+  + +R + N++ WL
Sbjct:   29 GRALAVTNGFTGATNDKTIIRYDSGVNNIRTESQYTEREYKLRKVNGTERTRRGCFLIMDNWYHEWVTLIAPSKYPQSNKDTAFSRHLESVRKDVECFFGILKGRFRILKLRMPYHKREYIDNIFFTCCILHNMLHTFDGLDVFDENTDWTGSAGHHDAWEHDPLTDYTSVGSKGVLLLPKEGEEEECGEGGHVRKERHPDH--AELKRQLIESFAFRKKINDITWL 253          
BLAST of mRNA_H-paniculata_contig20228.5223.1 vs. uniprot
Match: A0A6H5JHC3_9PHAE (DDE Tnp4 domain-containing protein n=2 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5JHC3_9PHAE)

HSP 1 Score: 168 bits (425), Expect = 2.910e-43
Identity = 89/205 (43.41%), Postives = 125/205 (60.98%), Query Frame = 2
Query:  389 LG*RKGIAEAVNDKSIVRFDKTVQAVKEGEPYRSMAYKLRDKDGVKQVEKGLYFIVDGEYHRWRSLVCPTTEAATRDELVWSKRLESVRKDLEWFFGILKGRFRILKLPITFRESAQVDNVVCTCCILHNMLHSFDGLKLHEPDMDWAGPDGLVDTWLHEDRKMNFGTNGRNSNGPPERVEDMRRRLVTHYTYRVENNEVAWLRS 1003
            LG  K    A+NDK+IV FD+ V+ +K     + + + L  +DG +  E+GLY IVDG YH+     CP     T+DEL + K+LESVRKD+E FFGILKGRFRILK+P+ +R   ++D +  TCC LHNMLHS+DGL L E D +WAG DG +D W+      +   N  + +   +  +D++ +LVT+     +   V W RS
Sbjct:  247 LGVSKAFPGAMNDKTIVMFDEYVRRIKT--ECKDVPFTLLGEDGSEFEERGLYLIVDGGYHK-----CPVQFPVTQDELAFRKQLESVRKDIECFFGILKGRFRILKMPLLYRGIHKLDCIFQTCCALHNMLHSYDGLSLLEKDCEWAGADGDLDPWVTTPEAESAADNSPDLHLFEDDFKDLQGKLVTNLAEMKKRGTVGWRRS 444          
BLAST of mRNA_H-paniculata_contig20228.5223.1 vs. uniprot
Match: A0A6H5JPH7_9PHAE (Uncharacterized protein n=2 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5JPH7_9PHAE)

HSP 1 Score: 168 bits (425), Expect = 7.840e-43
Identity = 92/213 (43.19%), Postives = 126/213 (59.15%), Query Frame = 2
Query:  380 GGYLG*RKGIAEAVNDKSIVRFDKTVQAVKEGEPYRSMAYKLRDKDGVKQVEKGLYFIVDGEYHRWRSLVCPTTEAATRDELVWSKRLESVRKDLEWFFGILKGRFRILKLPITFRESAQVDNVVCTCCILHNMLHSFDGLKLHEPDMDWAGPDGLVDTWLHEDRKMNFGTNGRNSNGPPERVE------DMRRRLVTHYTYRVENN-EVAWL 997
            G  L   +G   A NDK+I+R+DK V  ++    Y    YKL  +DG +  EKG Y +VD  YH+WR+L+ P+     R +L++SKRLES RKD+E +FGILKGRFRI KL I F +   +DNV  TCCILHNMLHSFD       + +WAG  GL +     D   ++ + G + +G  E VE       +R +LVT++ YR E   ++ WL
Sbjct:  286 GRVLAVTRGFTGATNDKTIIRYDKAVTRIRTDPVYTEQKYKLYAQDGQQFEEKGCYLLVDNGYHKWRTLIPPSKCPIDRGDLIFSKRLESARKDVECYFGILKGRFRINKLAIGFHKQEYIDNVFFTCCILHNMLHSFDNRGDMSEEPNWAGSAGLHNA-ADRDPNTDYSSVG-SMDGQHEAVEVETGFGALRSKLVTNFVYRREKKRDIVWL 496          
BLAST of mRNA_H-paniculata_contig20228.5223.1 vs. uniprot
Match: A0A6H5K8I3_9PHAE (Uncharacterized protein n=3 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5K8I3_9PHAE)

HSP 1 Score: 162 bits (410), Expect = 4.690e-41
Identity = 84/202 (41.58%), Postives = 124/202 (61.39%), Query Frame = 2
Query:  401 KGIAEAVNDKSIVRFDKTVQAVKEGEPYRSMAYKLRDKDGVKQVEKGLYFIVDGEYHRWRSLVCPTTEAATRDELVWSKRLESVRKDLEWFFGILKGRFRILKLPITFRESAQVDNVVCTCCILHNMLHSFDGLKLHEPDMDWAGPDGLVDTWL-HEDRKMNFGTNGRNSNGPPERVEDMRRRLVTHYTYRVENNEVAWLRS 1003
            +G   A NDK+I++FDK   AV+ G  Y+ + Y L+ +DG    EKG + IVDG YH W+ L  P    + + E  + ++LESVRKD E  FG++KGRFRI K+   +R+  ++DN+  TC ILHNML ++DG++L EPD DWAG DG +D  + H   +M+  T+        +  + +R++LVT++ YR     V W RS
Sbjct:  253 RGFPGAQNDKTIIKFDKFAMAVRNGW-YKDVEYTLKGEDGADIKEKGPWLIVDGGYHNWKQLQSPIRAPSNKAESGFKRQLESVRKDSECCFGVVKGRFRICKMQFLYRKKERIDNIFFTCIILHNMLLAYDGIELLEPDCDWAGADGDLDKNIEHPVVRMSAPTHEDAVVECDDGFDALRQKLVTNFAYRWGQGTVGWKRS 453          
BLAST of mRNA_H-paniculata_contig20228.5223.1 vs. uniprot
Match: A0A6H5JBE2_9PHAE (Uncharacterized protein n=2 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5JBE2_9PHAE)

HSP 1 Score: 161 bits (408), Expect = 9.340e-41
Identity = 83/208 (39.90%), Postives = 124/208 (59.62%), Query Frame = 2
Query:  380 GGYLG*RKGIAEAVNDKSIVRFDKTVQAVKEGEPYRSMAYKLRDKDGVKQVEKGLYFIVDGEYHRWRSLVCPTTEAATRDELVWSKRLESVRKDLEWFFGILKGRFRILKLPITFRESAQVDNVVCTCCILHNMLHSFDGLKLHEPDMDWAGPDGLVDTWLHEDRKMNFGTNGRNSNGPPERVE-DMRRRLVTHYTYRVENN-EVAWL 997
            G  L   +G   + NDK+I+  D+ V  ++  + Y    + +  KDG  +  KG Y IVD  YH+WR L+ P+    +  +L++SKRLESVRKD+E FFGILK RFRILKL +T+++  ++D V  TCCILHNMLH+ DG+   E D++W G   L +T  H     + GT   N     E    +++R+L T++ YR ++  ++ WL
Sbjct:  241 GRVLAVTEGFTGSTNDKTIICCDEAVDRIRTDKQYAEKPFTVHKKDGTTETLKGCYLIVDNGYHKWRMLIEPSKYPLSEADLLFSKRLESVRKDVECFFGILKMRFRILKLAMTYQKQERLDYVFFTCCILHNMLHTHDGMGGLEEDVNWVGSAELQNTSGHNLDSSSVGTKDLNDKPQVEAAHAELKRKLTTNFLYRKKHKKDIVWL 448          
BLAST of mRNA_H-paniculata_contig20228.5223.1 vs. uniprot
Match: A0A6H5JUX7_9PHAE (DDE Tnp4 domain-containing protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5JUX7_9PHAE)

HSP 1 Score: 156 bits (394), Expect = 6.180e-40
Identity = 82/203 (40.39%), Postives = 120/203 (59.11%), Query Frame = 2
Query:  401 KGIAEAVNDKSIVRFDKTVQAVKEGEPYRSMAYKLRDKDGVKQVEKGLYFIVDGEYHRWRSLVCPTTEAATRDELVWSKRLESVRKDLEWFFGILKGRFRILKLPITFRESAQVDNVVCTCCILHNMLHSFDGLKLHEPDMDWAGPDGLVDTWLHEDRKM--NFGTNGRNSNGPPERVEDMRRR-LVTHYTYRVENN-EVAWL 997
            +G   + NDK+IV +D  V  ++  + Y    + L ++DG     KG YF+ D  YH+W+ L+ P+    + D+L++SKRLESVRKD+E FFGILKGRFRILKL + ++   ++DNV  TCCILHNMLH+FDG+     + +W    G+  T   E      +FGT   N     E    +R+R L T + YR ++  ++ WL
Sbjct:  124 EGFTGSTNDKTIVCWDAAVDKIRTDKQYTEKTFDLYNEDGTTTTLKGCYFLDDNGYHKWQILIEPSKYPLSEDDLLFSKRLESVRKDVECFFGILKGRFRILKLAMAYQSQERIDNVFFTCCILHNMLHTFDGMDQLVENTNWVSSAGVGTTLATEPEADCGSFGTKDVNDQPQLEIGHTVRKRQLTTSFAYRKKHKKDIVWL 326          
BLAST of mRNA_H-paniculata_contig20228.5223.1 vs. uniprot
Match: D7FSK2_ECTSI (Uncharacterized protein n=1 Tax=Ectocarpus siliculosus TaxID=2880 RepID=D7FSK2_ECTSI)

HSP 1 Score: 147 bits (372), Expect = 3.550e-37
Identity = 76/206 (36.89%), Postives = 120/206 (58.25%), Query Frame = 2
Query:  380 GGYLG*RKGIAEAVNDKSIVRFDKTVQAVKEGEPYRSMAYKLRDKDGVKQVEKGLYFIVDGEYHRWRSLVCPTTEAATRDELVWSKRLESVRKDLEWFFGILKGRFRILKLPITFRESAQVDNVVCTCCILHNMLHSFDGLKLHEPDMDWAGPDGLVDTWLHEDRKMNFGTNGRNSNGPPERVED----MRRRLVTHYTYRVENNE 985
            G  +   +G   + NDK+ V +D  V+ ++  + Y    + + ++DG     KG Y +VD  YH+W+ L+ P+    + ++L++SKRLESVRKD+E FFGILKGR RIL L + F+   ++DNV  TCCILHNMLH+FDG+     + +W    G+  T + E    +     ++ NG P+ VE      +R+L T + YR ++ +
Sbjct:   72 GRAIAVTEGFTGSTNDKTTVCWDAAVEKIRTDKQYTEKTFDVYNQDGTTTTLKGCYVLVDNGYHKWQILIEPSKYPLSENDLLFSKRLESVRKDVECFFGILKGRLRILMLAMAFQSQERIDNVFFTCCILHNMLHTFDGMDQLVENTNWVSSAGVGTTSVTEPEADSGSVGTKDVNGRPQ-VEAGHAVRKRQLTTSFAYRKKHKK 276          
The following BLAST results are available for this feature:
BLAST of mRNA_H-paniculata_contig20228.5223.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 vs UniRef90)
Total hits: 25
Match NameE-valueIdentityDescription
A0A6H5JTC6_9PHAE1.960e-4538.57DDE Tnp4 domain-containing protein n=1 Tax=Ectocar... [more]
A0A6H5JAU4_9PHAE6.100e-4439.01Uncharacterized protein n=2 Tax=Ectocarpus sp. CCA... [more]
A0A6H5KY50_9PHAE1.320e-4343.19Uncharacterized protein n=1 Tax=Ectocarpus sp. CCA... [more]
A0A6H5JQM6_9PHAE2.420e-4335.68Uncharacterized protein n=1 Tax=Ectocarpus sp. CCA... [more]
A0A6H5JHC3_9PHAE2.910e-4343.41DDE Tnp4 domain-containing protein n=2 Tax=Ectocar... [more]
A0A6H5JPH7_9PHAE7.840e-4343.19Uncharacterized protein n=2 Tax=Ectocarpus sp. CCA... [more]
A0A6H5K8I3_9PHAE4.690e-4141.58Uncharacterized protein n=3 Tax=Ectocarpus sp. CCA... [more]
A0A6H5JBE2_9PHAE9.340e-4139.90Uncharacterized protein n=2 Tax=Ectocarpus sp. CCA... [more]
A0A6H5JUX7_9PHAE6.180e-4040.39DDE Tnp4 domain-containing protein n=1 Tax=Ectocar... [more]
D7FSK2_ECTSI3.550e-3736.89Uncharacterized protein n=1 Tax=Ectocarpus silicul... [more]

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Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
H-paniculata_contig20228contigH-paniculata_contig20228:28..2090 +
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 vs UniRef902022-09-19
OGS1.0 of Halopteris paniculata Hal_grac_a_UBK monoicous2021-02-24
Properties
Property NameValue
Taxonomic scopeEukaryota
Seed ortholog score134.0
Seed ortholog evalue6.7e-29
Seed eggNOG ortholog2880.D7FSK2
Hectar predicted targeting categoryother localisation
EggNOG free text desc.Plant transposon protein
EggNOG OGs2E2RF@1,2S9YA@2759
COG Functional cat.S
Best tax levelEukaryota
Best eggNOG OGNA|NA|NA
Exons2
Model size1455
Cds size531
Stop1
Start1
Relationships

The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_H-paniculata_contig20228.5223.1prot_H-paniculata_contig20228.5223.1Halopteris paniculata Hal_grac_a_UBK monoicouspolypeptideH-paniculata_contig20228 518..1656 +


The following UTR feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1622929522.6924057-UTR-H-paniculata_contig20228:27..5171622929522.6924057-UTR-H-paniculata_contig20228:27..517Halopteris paniculata Hal_grac_a_UBK monoicousUTRH-paniculata_contig20228 28..517 +
1691480897.374703-UTR-H-paniculata_contig20228:27..5171691480897.374703-UTR-H-paniculata_contig20228:27..517Halopteris paniculata Hal_grac_a_UBK monoicousUTRH-paniculata_contig20228 28..517 +
1622929522.7439935-UTR-H-paniculata_contig20228:1656..20901622929522.7439935-UTR-H-paniculata_contig20228:1656..2090Halopteris paniculata Hal_grac_a_UBK monoicousUTRH-paniculata_contig20228 1657..2090 +
1691480897.413894-UTR-H-paniculata_contig20228:1656..20901691480897.413894-UTR-H-paniculata_contig20228:1656..2090Halopteris paniculata Hal_grac_a_UBK monoicousUTRH-paniculata_contig20228 1657..2090 +


The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1622929522.7128692-CDS-H-paniculata_contig20228:517..6011622929522.7128692-CDS-H-paniculata_contig20228:517..601Halopteris paniculata Hal_grac_a_UBK monoicousCDSH-paniculata_contig20228 518..601 +
1691480897.3851385-CDS-H-paniculata_contig20228:517..6011691480897.3851385-CDS-H-paniculata_contig20228:517..601Halopteris paniculata Hal_grac_a_UBK monoicousCDSH-paniculata_contig20228 518..601 +
1622929522.726912-CDS-H-paniculata_contig20228:1209..16561622929522.726912-CDS-H-paniculata_contig20228:1209..1656Halopteris paniculata Hal_grac_a_UBK monoicousCDSH-paniculata_contig20228 1210..1656 +
1691480897.3940444-CDS-H-paniculata_contig20228:1209..16561691480897.3940444-CDS-H-paniculata_contig20228:1209..1656Halopteris paniculata Hal_grac_a_UBK monoicousCDSH-paniculata_contig20228 1210..1656 +


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_H-paniculata_contig20228.5223.1

>prot_H-paniculata_contig20228.5223.1 ID=prot_H-paniculata_contig20228.5223.1|Name=mRNA_H-paniculata_contig20228.5223.1|organism=Halopteris paniculata Hal_grac_a_UBK monoicous|type=polypeptide|length=177bp
MAYKLRDKDGVKQVEKGLYFIVDGEYHRWRSLVCPTTEAATRDELVWSKR
LESVRKDLEWFFGILKGRFRILKLPITFRESAQVDNVVCTCCILHNMLHS
FDGLKLHEPDMDWAGPDGLVDTWLHEDRKMNFGTNGRNSNGPPERVEDMR
RRLVTHYTYRVENNEVAWLRSQYGQK*
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mRNA from alignment at H-paniculata_contig20228:28..2090+

Legend: UTRpolypeptideCDS
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_H-paniculata_contig20228.5223.1 ID=mRNA_H-paniculata_contig20228.5223.1|Name=mRNA_H-paniculata_contig20228.5223.1|organism=Halopteris paniculata Hal_grac_a_UBK monoicous|type=mRNA|length=2063bp|location=Sequence derived from alignment at H-paniculata_contig20228:28..2090+ (Halopteris paniculata Hal_grac_a_UBK monoicous)
GAGTTATTTATTCCTCTGCGGGGTAGGCGCTACCCCGGGTCGACCGAACC AAGTAGGCAGTGTGGGGGTTGCACCCACTATAGCTTCGATGATATCGGCC AACTCTCCTTGATAAGCGAGTCGACTGCCCAAAATGCGTTCCACACATTT TTCAATCGTTTCGCTGAAGATCTTTTTCATGAGTAGATTAAACTCCCTAC CGGGGATGCCCTCGCAGCCACGATGAAGGTGTACGATGCGGTGGGCTTCA CCGGGGCAGTAGGCTCGACTGATGTCACCCACATCGCATGGAGTTTCACC CCGGCACCACATACCCATCTCTACGTGGGCAAGGAAGGATTCCTGACTCT CGCATACCAGGCAACGGTAGACCACTCGGGGCGGGTATTTGGGATGACGG AAGGGAATAGCCGAAGCAGTGAACGATAAATCCATCGTTCGTTTCGACAA GACAGTTCAAGCGGTCAAGGAGGGTGAGCCGTACAGGTCGATGGCTTACA AGCTCCGTGATAAGGACGGCGTGAAACAGGTGGAGAAGGGTCTTTACTTC ATCGTGGACGGAGAATATCACCGGGTGAGTCACCTGCTGTTGTTTGATGG TCATTGCTGCTGCACCACCCTACCGAAATGCGTTGTATAGTTTTGCGTTA TGCGGCGAATTTTTTTTTCCTTTCTGACAAGCATACCCCGTTTAGTGTTG TGTATCAACCACACCTCACCTACAATGTACAACTTTGTTGATCCCAACGT AAACGGCTGCCCGAGGTCCCACTTCGTGAGCCGCAGCTCTAGACTCACCG AACATTGTTTCAAATATTACCGCCAGACGATGTGCAAACTATGAGACAAC AAGCTTCCTTGACATAGGTAGCAGCTACGCGAAATCCGTAGGTCGTACCA CGTGGCGTATCTTGTTAAAGCGCAGGCCATGCCACCGTTGACAAGGACTT TGCTAGGATGATAAGACGCTTCTGTGTCATTTTTTATGGTCGGTTTCAAC CGTCGGTGTTGTGGATGTCGTCTTCAGCTTCAATTTCCTCTGTACCGCTG AGTGATCACTGATCAAGGCTGAGATAGATCATACAAGCCGGGTGTTTCAA TATCTGACACGATTAGCCAGACGCTGCATAAGAACAACGTGTATCGACAC CACTGTTTTCTCGTTTCCCCTCTTATTTGCAGTGGAGGAGTCTAGTGTGC CCGACAACAGAAGCTGCAACTCGAGACGAATTAGTGTGGAGTAAACGTCT CGAGAGCGTTCGAAAGGACCTGGAATGGTTCTTCGGCATTCTCAAGGGCC GCTTCAGAATTTTGAAGCTACCCATTACTTTCAGGGAGTCCGCTCAGGTA GACAACGTCGTTTGCACATGCTGTATCCTTCACAATATGCTGCATTCGTT CGACGGACTGAAATTGCACGAGCCGGATATGGACTGGGCCGGGCCGGATG GCCTCGTTGACACGTGGCTTCACGAAGATCGCAAAATGAACTTTGGCACA AACGGTCGCAATTCGAACGGTCCGCCAGAGCGCGTCGAAGACATGAGAAG GAGGCTAGTTACGCACTACACATACAGGGTGGAAAACAACGAAGTGGCTT GGTTGCGGTCGCAATATGGTCAGAAATGATTTGAGCGTGTAGATTGGGCA TGGTGCTGTATGGATTTTCATGTGTCGTGACGATTTATGTTGTGACGTTT GAGGGTTTGGTTAGCAGGATGGACTGTAGCAAGCGACGTAATTGTCGGCC ATCTTGGATGAATTGCAGATGGGCACGGAATGGCCGCCCTCAGCATTTTT GCTAGGCATGGTATGGCCCGCTCTGACTTTAAATGGTGTCATGATTAATT TTGCTGGGATGCTGATCGTATTAAAATTCAAGTCTTCTTCCCTATAAGCA GTAGAGGCCCGTTGAAACGACTGTGTGTCTGAGTGGTTCATGAAATATTT CATATATACATCGAGCGCTACTGTACAGCTAATGGTAGACGGAATAGTTG ACCCGTGTTGGTGAGCGTACGACACGGGTGGCTTTGAAAAATATGGCAAG CAAGAGATATCCC
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Coding sequence (CDS) from alignment at H-paniculata_contig20228:28..2090+

>mRNA_H-paniculata_contig20228.5223.1 ID=mRNA_H-paniculata_contig20228.5223.1|Name=mRNA_H-paniculata_contig20228.5223.1|organism=Halopteris paniculata Hal_grac_a_UBK monoicous|type=CDS|length=1062bp|location=Sequence derived from alignment at H-paniculata_contig20228:28..2090+ (Halopteris paniculata Hal_grac_a_UBK monoicous)
ATGGCTTACAAGCTCCGTGATAAGGACGGCGTGAAACAGGTGGAGAAGGG
TCTTTACTTCATCGTGGACGGAGAATATCACCGGATGGCTTACAAGCTCC
GTGATAAGGACGGCGTGAAACAGGTGGAGAAGGGTCTTTACTTCATCGTG
GACGGAGAATATCACCGGTGGAGGAGTCTAGTGTGCCCGACAACAGAAGC
TGCAACTCGAGACGAATTAGTGTGGAGTAAACGTCTCGAGAGCGTTCGAA
AGGACCTGGAATGGTTCTTCGGCATTCTCAAGGGCCGCTTCAGAATTTTG
AAGCTACCCATTACTTTCAGGGAGTCCGCTCAGGTAGACAACGTCGTTTG
CACATGCTGTATCCTTCACAATATGCTGCATTCGTTCGACGGACTGAAAT
TGCACGAGCCGGATATGGACTGGGCCGGGCCGGATGGCCTCGTTGACACG
TGGCTTCACGAAGATCGCAAAATGAACTTTGGCACAAACGGTCGCAATTC
GAACGGTCCGCCAGAGCGCGTCGAAGACATGAGAAGGAGGCTAGTTACGC
ACTACACATACAGGGTGGAAAACAACGAAGTGGCTTGGTTGCGGTCGCAA
TATGGTCAGAAATGATGGAGGAGTCTAGTGTGCCCGACAACAGAAGCTGC
AACTCGAGACGAATTAGTGTGGAGTAAACGTCTCGAGAGCGTTCGAAAGG
ACCTGGAATGGTTCTTCGGCATTCTCAAGGGCCGCTTCAGAATTTTGAAG
CTACCCATTACTTTCAGGGAGTCCGCTCAGGTAGACAACGTCGTTTGCAC
ATGCTGTATCCTTCACAATATGCTGCATTCGTTCGACGGACTGAAATTGC
ACGAGCCGGATATGGACTGGGCCGGGCCGGATGGCCTCGTTGACACGTGG
CTTCACGAAGATCGCAAAATGAACTTTGGCACAAACGGTCGCAATTCGAA
CGGTCCGCCAGAGCGCGTCGAAGACATGAGAAGGAGGCTAGTTACGCACT
ACACATACAGGGTGGAAAACAACGAAGTGGCTTGGTTGCGGTCGCAATAT
GGTCAGAAATGA
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