mRNA_H-paniculata_contig2022.5221.1 (mRNA) Halopteris paniculata Hal_grac_a_UBK monoicous
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Overview
Homology
BLAST of mRNA_H-paniculata_contig2022.5221.1 vs. uniprot
Match: D7G5C7_ECTSI (Chorein N-terminal domain-containing protein n=2 Tax=Ectocarpus TaxID=2879 RepID=D7G5C7_ECTSI) HSP 1 Score: 370 bits (950), Expect = 3.090e-102 Identity = 244/647 (37.71%), Postives = 309/647 (47.76%), Query Frame = 1
Query: 1 LWRLRFGEWVSASRYISARELLHPHLVVGTFEDESGGVHDNLYEDLVLQVLFRTKIKS---VAPRTRKRRMRKFLMPWQLPQEDVSKAWGLMRRHGLRWETRQTGAIRLALDEERADVRSMDPAVLQALWSIQLQMDAQLPHGLCAAARRMAVARVEWRNRTDALWQARAEKQRRLGLGLGADTAIQKLRGTAPLSTPRPLPPTAAEDG---------KDCDDGGVLNQGGDGDGADRVGTLLVRMGQLDGVRGMGFFSLAPKAVAKVMLEESSASVEDLEMETAYTKDAKYEEKSARCVWDKTFRLQVELDEFHVLELRRQRSRRRHHGLGCSPFKITSRTAGLSTSPGAATRATTSTHRTPRVAAVDRSNPTMEKETVDTPAAEGEDAKSGGRSXXXXXXXXXXXXXXXXXXXXXXXXXXGSLTRDSCTPNWSSPVRNGRTAGRDMNEAGAGAGASTSANATPMMKAVSPIRRAASLSRSRTDSIDSASSQQAIERTPRSSFLLSITCVDKGVFGDNELGTVTLPSKELTAVALKVMEHKCTLFSPNALDKDPLELTLHTVFVPPGRDVESCEQELRAVGKLRHLQNQRELADPPPSDSPALQNQSWSGMRLKPPSPLSPGVAISGTKSERPSFGEVGSREVQML 1905
LWR F EWV A+RY+S R+LL LVV F D+SGG+H+ LYEDL +Q + KS RT +R++ ++LMPW+LPQEDV KAWGL+ R RWE R G +LA+DEERA+ +DPAVLQALWSIQLQ+DAQLPH +CA ARRMA R WR+R D LWQARAEKQRRLGLG+G A +L +S TA+E G + + V+ + GDG ADRVGTLLVRMGQLDGV G+G S+APKA+A +MLEESSA++E++ +ET T+ AKY+ K+ RC W +TFRLQ +E PRSSFLLS+TC+DK VFG +LGT+TLP K+LT+V LKV+EH+C LFSP A+ + P ELT+ T+FVPPG DV EQEL A+GK R LQ + ++A P S R P+ SP + K +R S VG REV++L
Sbjct: 479 LWRTWFAEWVGAARYLSLRQLLQTRLVVENFSDKSGGIHNRLYEDLEVQSSTQKVTKSSGATGKRTGERKLARYLMPWELPQEDVDKAWGLINRKTWRWELRGAGGFKLAIDEERAEQGQLDPAVLQALWSIQLQLDAQLPHRICAFARRMAFLRFGWRSRIDKLWQARAEKQRRLGLGVGDPPAPPRLTPNDSISF------TASEAGFMGLSEADTNEAAETTVVEEAGDG--ADRVGTLLVRMGQLDGVGGVGLLSVAPKAIATLMLEESSATLEEMNLETNSTEVAKYDHKNERCCWHETFRLQT------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------VEAVPRSSFLLSVTCLDKSVFGVTQLGTMTLPGKQLTSVPLKVLEHRCALFSPAAVSRQPRELTIETIFVPPGEDVALAEQELSAIGKRRRLQEKLDMATSKPKSS----------FRRNKPARGSPAALDASAKPQRTSLDNVGEREVKVL 921 The following BLAST results are available for this feature:
BLAST of mRNA_H-paniculata_contig2022.5221.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 vs UniRef90) Total hits: 1
Alignments
The following features are aligned
Analyses
This mRNA is derived from or has results from the following analyses
Properties
Relationships
The following polypeptide feature(s) derives from this mRNA:
The following UTR feature(s) are a part of this mRNA:
The following CDS feature(s) are a part of this mRNA:
Sequences
The following sequences are available for this feature:
protein sequence of mRNA_H-paniculata_contig2022.5221.1 >prot_H-paniculata_contig2022.5221.1 ID=prot_H-paniculata_contig2022.5221.1|Name=mRNA_H-paniculata_contig2022.5221.1|organism=Halopteris paniculata Hal_grac_a_UBK monoicous|type=polypeptide|length=1164bp MRKFLMPWQLPQEDVSKAWGLMRRHGLRWETRQTGAIRLALDEERADVRSback to top mRNA from alignment at H-paniculata_contig2022:8305..22979- Legend: UTRpolypeptideCDS Hold the cursor over a type above to highlight its positions in the sequence below.>mRNA_H-paniculata_contig2022.5221.1 ID=mRNA_H-paniculata_contig2022.5221.1|Name=mRNA_H-paniculata_contig2022.5221.1|organism=Halopteris paniculata Hal_grac_a_UBK monoicous|type=mRNA|length=14675bp|location=Sequence derived from alignment at H-paniculata_contig2022:8305..22979- (Halopteris paniculata Hal_grac_a_UBK monoicous)back to top Coding sequence (CDS) from alignment at H-paniculata_contig2022:8305..22979- >mRNA_H-paniculata_contig2022.5221.1 ID=mRNA_H-paniculata_contig2022.5221.1|Name=mRNA_H-paniculata_contig2022.5221.1|organism=Halopteris paniculata Hal_grac_a_UBK monoicous|type=CDS|length=6984bp|location=Sequence derived from alignment at H-paniculata_contig2022:8305..22979- (Halopteris paniculata Hal_grac_a_UBK monoicous)back to top |