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Homology
BLAST of mRNA_H-paniculata_contig2022.5220.1 vs. uniprot
Match: D7G5C9_ECTSI (Hypothetical leucine rich repeat protein n=1 Tax=Ectocarpus siliculosus TaxID=2880 RepID=D7G5C9_ECTSI) HSP 1 Score: 73.2 bits (178), Expect = 1.840e-12 Identity = 45/99 (45.45%), Postives = 63/99 (63.64%), Query Frame = 2
Query: 98 KINSREEASALTGGITTDHVSRLVISGLDLDALP-DVLLSEKHDSLAVLHLQRNALVLLPSELFLNLKGLQELDGSENRLSYIPETIGTLSNLRKLRLR 391
K+ S A AL SRL ++ + +DALP D+ S + + VL L+ NAL +LPSELFL + L+E+D S+NR+SY+PETIG + LRKL L+
Sbjct: 10 KVASNRVADALAA-----ESSRLSLARIGIDALPGDLTASNRVTHITVLDLKHNALQMLPSELFLCVTQLEEVDASKNRISYLPETIGLATGLRKLNLQ 103
The following BLAST results are available for this feature:
Alignments
The following features are aligned
Analyses
This mRNA is derived from or has results from the following analyses
Properties
| Property Name | Value |
| Taxonomic scope | Eukaryota |
| Seed ortholog score | 72.4 |
| Seed ortholog evalue | 3.4e-10 |
| Seed eggNOG ortholog | 2880.D7G5C9 |
| Preferred name | LRRC59 |
| Hectar predicted targeting category | other localisation |
| GOs | GO:0005575,GO:0005622,GO:0005623,GO:0005634,GO:0005635,GO:0005737,GO:0005739,GO:0005759,GO:0005783,GO:0005789,GO:0009295,GO:0012505,GO:0016020,GO:0031967,GO:0031974,GO:0031975,GO:0031984,GO:0042175,GO:0042645,GO:0043226,GO:0043227,GO:0043228,GO:0043229,GO:0043231,GO:0043232,GO:0043233,GO:0044422,GO:0044424,GO:0044425,GO:0044428,GO:0044429,GO:0044432,GO:0044444,GO:0044446,GO:0044464,GO:0070013,GO:0098827 |
| EggNOG free text desc. | Leucine rich repeat |
| EggNOG OGs | COG4886@1,KOG0473@2759 |
| COG Functional cat. | U |
| Best tax level | Eukaryota |
| Best eggNOG OG | NA|NA|NA |
| Exons | 6 |
| Model size | 861 |
| Cds size | 747 |
| Stop | 1 |
| Start | 1 |
Relationships
The following polypeptide feature(s) derives from this mRNA:
The following UTR feature(s) are a part of this mRNA:
The following CDS feature(s) are a part of this mRNA:
Sequences
The following sequences are available for this feature:
protein sequence of mRNA_H-paniculata_contig2022.5220.1 >prot_H-paniculata_contig2022.5220.1 ID=prot_H-paniculata_contig2022.5220.1|Name=mRNA_H-paniculata_contig2022.5220.1|organism=Halopteris paniculata Hal_grac_a_UBK monoicous|type=polypeptide|length=249bp
MLLVDRALTHDDAVNHRQGKGGTKLRNIKINSREEASALTGGITTDHVSR LVISGLDLDALPDVLLSEKHDSLAVLHLQRNALVLLPSELFLNLKGLQEL DGSENRLSYIPETIGTLSNLRKLRLRGNQLRDLPDGICRLRALQELDLSQ NPLEVLPAGIGMLQRLTRMDLSDNSCLQEIPDEAGQLLALDHINLKGTPV IRMPLAIQRLKTKGELLRCKALRRKLVGRALHIRSSVRRAFLEEALML* back to topmRNA from alignment at H-paniculata_contig2022:1733..6915+ Legend: UTRpolypeptideCDS Hold the cursor over a type above to highlight its positions in the sequence below. >mRNA_H-paniculata_contig2022.5220.1 ID=mRNA_H-paniculata_contig2022.5220.1|Name=mRNA_H-paniculata_contig2022.5220.1|organism=Halopteris paniculata Hal_grac_a_UBK monoicous|type=mRNA|length=5183bp|location=Sequence derived from alignment at H-paniculata_contig2022:1733..6915+ (Halopteris paniculata Hal_grac_a_UBK monoicous) ATTGGGAGCTGCGATGTTGTTGGTAGACCGGGCTTTGACGCACGACGATG
CCGTCAATCATCGACAGGGAAAAGGGGGGACAAAGCTTAGAAATATAAAG
ATCAACAGCAGGGTAAGGTCGGCGCGATATATGAGTAATTCAGCTCTTGG
CGATGATGTTTAGCCTTGCAACTGCCACGTGTAGTACTGACCATCATCAG
CGTGCTGTACTGTACTGTACTGTACTGTAGTACAACAGTCCCGTGTGCCG
TGCAGAACAACTCCACTACGCCCGCCGGTCTGTGCTATGATGGTTTGTAA
AGTATTACATGTAGTCAATCACATGATCCAGACTATGTTTTTATGTAAAT
ATTTGCACACAGTCTTGAAGTTGTCGTGAGGTTAACCTTCAGGCACAAAC
ATGATAGGTACACCATGAATGACTAACTACATTACGCTGTAGACCCGTGC
ATGTCTGTTGCGGTACCGCGCTGCTCGCCACTGTTTACCACCATCCATTC
AGGAGGAGGCTTCTGCTCTTACTGGCGGTATAACCACAGATCATGTTTCT
AGGCTTGTTATTTCGGGATTGGATCTGGATGCTTTGCCGGATGTCCTACT
ATCGGAAAAACATGACAGCTTAGCCGTGCTACATTTGCAGCGAAACGCAT
TGGTACTCTTGCCCAGCGAGTTGTTCCTCAATCTCAAGGGGTTGCAGGAA
CTAGACGGCAGCGAGGTACGTGCTCAACAATGTTCAAGCTTGGAAATCGC
GACATCGAATTGGTGGAAGCTGGACATCAGTTCCATGATCTGAGCCTACG
TTTCAATGGATAGTTGCGTCACGATGACGACAAACCAACCTAAGGCCCTT
GAAAGGCACTAGTGTCGGTCGGTTTGGTGTTTTTTAGCTCAAGGCACCAT
TTGGGGTAGCTGCGCGCTATGCCGAAGTCCCTCTCCACAGTAGTTCAGTT
TTGGAAACATCTACTTTTGATGTTCGCCCCATCGGCATCGTAGCGTACTC
CTAAATGTGTTGGTACATTTTGAGACAGAAAAACTCGTTCACGAGGATAA
TTAGAGCTACGTCGATTGATGCGCCTTGGTGACTGTTGACGAATGTCATC
TGTTTTTTCGAGGTTCATAATTGACCCACGTTGCAGCGACTCTACGAAAA
AGTAAATCTGAAGGAACAAGCACACCCCGAAAGCCAACGAAAACCAAAGA
AAAAGGAAAACCAGGGTTCGTGGGGGGGGGGGGGGTATATGCCCACAACA
ATAACTCGAGCTTTAGTGTTGCCACTGAATCAAGACCAATGAGCCGGGCG
TGTTACAGGCAGCCGGGAAATGAACCGCCTTGTGACAAGTAGCGACAGTG
AGAGCACTAACTGGGTTGAGTTGGGCGTGCCGCGCACGAATACTTCAGTT
GAATGTTTTAAGTACCCACTATACATATATAGATGTGTCGCAGGCGAACA
CGTTTCTTGTCTGCACCACGCCATAGTGCCCGTTAAGCTAAAGGTAACAA
ATTGAGCAATTTCCTACAACTGTAAAGAGCTTCTATCTTCATAACCCTCC
CCCTCCTTTAGACGCTGCACTTCTTTATGAAGTGAAGAAGGTCATAGATC
GCCGCCTCCCCCACTATATGTAGCGCGGATGGATGAAATCACGTATCTCC
CACCAATTTAGAGGCCAGAAGGTAATCGTGTGATGTCTTTTTTGGAGAAG
AAACGACTCTGCCAGGATGAACCTGGGTCCTTGCGGCGACGCCAAATGTC
GTAGTGCCCATTTAGCTAAAGGTAAAAGTTTAACCAATTTCCCACAACTG
CAAGGATTTTCTATCCTCACAACAACCAACCCTTCTATAGCCGAATCAAT
TCGAACACAAGAATGCGAACACAAGCAGGGAGAGTAGCACACACATCGAC
ATAAAATAGATAATACACGTCGCAATGACCTTACTCTAAATCTATCACCC
ATGAAGAAACTTCACGAGCCAGCCAGGTTTCCAACCTTCAATCGTCCTCT
GACTCTATCCAAAAATGTCATAACCTTCAATTTGCGACATGATTTTCCGT
TCTTCAAGCGTTTTCTGCGAGCTTGTGAACGCCACGAGCTTGAAACAAAA
ACATACCAACCAAAATGTACCGGTAGTGTTTCACAAAAATACGAGTTAAG
GCAGGGTTTGAGGGAGGTTGGGATTCCAGAATATCACTTTTGAGAGCCAG
CCCCTTGCACGTTGGGTGCGGACTGGTATGAACCCGAAGCATGAGTTCTT
TGAACTTTACTACTAGCTGCGTAAGAGAACACATCAAGGACGCAAGCGGA
GATTTCCATACTCGGCACTTATTTGATTCTACATCCACTTATCCGAGGCG
GATACCAGCTACGTTTGCGACGACACATATAACCTCGCAGGATTCACATG
GCATCACTGGCTGGCGTAGCTGACACGGTATTCACATGTCGTTCCCCCCG
CGATATTGTGTCAATGCGCTTACATTGCTCACAGAACCGATTGTCCTACA
TACCAGAGACAATTGGAACACTTTCCAACCTGCGCAAGCTTAGGCTGAGG
GGCAACCAGCTTCGAGACTTGCCCGACGGGATTTGCCGACTGCGTGCGCT
CCAGGAGCTAGATCTGAGCCAGAATCCCCTCGTAAGTTCAAATTTGCGTA
TTGCCAGTCGTTCCACGCTTAGTGATTCTTGTCTAACTTTGCGTTAGGAT
CCTTGTGCGGGAAGGGCAGGGAAGGTTTTAGGGTGTGAAAACGGAATTAT
CACCCAGAGCCGGCGCCATATCCCAGTGCTTGGCACCCGTTTGAAGACTG
TATGTTGCAGCAAACCATTACTGGGTCGTCTTCAAGGGTACGAAACTTCA
CAACCGCGATACATGTGATCAGAAAACAACAAGGAACCGGCAAGACCCCC
AACAAGCTGCAAGTGTACGCGTCACAACACAAAAGGTGAAGCAATAGGTT
GTATGCGTGCGAAGGGTCAACCGTTTTAATGGCCGATTGAAAACAACACC
GTGAAGTTGGCGTGCAACGCTGCACGAGTCAGACGTTAGCATTTGCAGTG
TTTTTGCGTTTATTTCATGTATAATCGTGGGCGAGGTATGTCCCACGCTG
TTCTCGTTCTCACTCTGTCACATATTTCGAGTGCGCAAAGACCGATCGAA
CGTCGGCGCCACTCCTAAAAGACCCCAACAACCGTTCCGGTAGCTCTTTC
TTGTCTTCGTCCCCGCACAGCTTCACGCTCGGCTTCTCCCATATGTGCCC
TCTGTAAGAATGGCAGGAAGTCCTTCCCGCGGGAATCGGGATGCTGCAGC
GACTGACACGTATGGATTTGTCCGACAACAGTTGCTTACAAGAAATACCG
GATGAGGTAGGTGCTTTGTACCCCAAGATGAATATACTCTGGAGTATATT
GTTTTTTCAATCGGAAACGTCATTTCGAACCGCCCTTGCTCCATGTAGGT
TCTGAGCAATATTTCGCTGCCCGTGAAATTTTGCTGTAGCTATTACTGTC
AACGAGTTGCAGGAATCTGTTCCTCAGGTCATGGCATAATCTGATGTGGG
AATATACGCACCTGAATGCGCTGTTGTTCGAAAATGGGCGGCATTTGTTT
ACAATCGCACATAGCGCTACTGAGTGAGTAACTACAGTAGGATATATGGG
CGAGCCTAGTATGCAATTGAATATTGGCTGCCAACCACTCACGCGTGGAT
CATAAGCAAGACACTAAGCTCACATGCTTCAAGATGTATGGATTGGCCCT
GCCTTAATTTCCTTGTGTTATTGCAGCTCCGTAGTCGACCCTTTGAGAAG
GAACAGCGCTGACTCCTCCTGAGCACAGATTGTCGTGGTACAAAATAGCA
TGCAATTGTTGTTACATACACTACATGACACAGCACGCTTGTGTCGTTTG
CAATGGGCTCAGGCTGGCCAACTTTTGGCATTGGACCACATAAACCTAAA
GGGGACGCCCGTGATTCGGATGCCGCTGGCTATTCAGCGACTAAAAACGA
AGGTACGAGCTACTAGGTCTCTCTTGTATTAATATAGTAGGTGGGGGATG
GGGAGGAATACAAGGAAAATGTACCCTGGTACCACGTTCTAAACGTTCAA
AATCACGCCGGAGATATGTGTTTGAAGATGCCAGGAGCTCAACGATGACA
GCCAATAATAACTTTCAAGTGGCTTCGATCGAAGAGTGCTAACCTTCGCC
GATAGGTTATTTTCGACCGTGTGTTTTATGTGTTCGCTGTGGACAAGGAA
TCGCCGAGCTGACAAACCGTATTCGACCGAAATACATGTTACGATGGGAG
AAACTTACGGTTTTCGGGGAAAAACCGACGTAAGCATTTTGCTGCTGGCG
TTTTGTTGTCCACGATAGAGTAGTCTTCCACTGGATTGAGTTTTCGGTCA
GTCATGACTACAAGTATATTTCCGTACTTCAACCCTTTCATTTGATATTG
CTACATATAGAGATCGTATCGGTGAGTGAATGCACTAACTGCTCGACGTT
TGGGGTATCGGCGGTGTCGTTCTATTCACAGCGCTACAGTAGCGTTAACC
AATCTGCTTGTCTACAAATCATAACTGATGACTGGGTAATCGCAACACTT
CGCGTTTTAAAAACGCCCTCAAAAACTGGGATCGAAGCGGACTTGGCCTT
CATGCCAAATAATTACCAATGCTTCGAATACGATGAAAATAAATAACCGG
ATGCGCCCGTAGCTGACTTGTGACGAGCACCGAGGTGTTCACAATGCTTT
GTGTTTTGCTTGGCCATGCTCTATGAGATTGGAAAAAGCATGCTTGGTGC
ATTGAGAGCTCTGTTGCTGTATAGACCTGCAATGAACCAAATCTGTGCCA
CACCCATGATGGGTACATGTGTCACCGAGCTATAGGGTTCCTACTGCGTA
CACTCAACGAGCTGACCTACTGGCGTTATAGTAAATGTCTCACCATATTG
CTACGTTTGCCGCTGGTCGCACAGGGAGAGCTTCTTCGATGTAAGGCTCT
CAGACGGAAGTTGGTGGGGAGGGCGCTGCACATCCGCTCCTCCGTCAGAA
GGGCCTTCTTAGAGGAAGCCTTGATGCTCTGAGACCGGAAGAGTCACGGA
GACTATTTAGCCGTTTGCCGTGTGACAAAAAATTCTTGGAAATGAATGCA
CTTGAAGATCATCCCGATATAGGGATAGCCGAC back to topCoding sequence (CDS) from alignment at H-paniculata_contig2022:1733..6915+ >mRNA_H-paniculata_contig2022.5220.1 ID=mRNA_H-paniculata_contig2022.5220.1|Name=mRNA_H-paniculata_contig2022.5220.1|organism=Halopteris paniculata Hal_grac_a_UBK monoicous|type=CDS|length=1494bp|location=Sequence derived from alignment at H-paniculata_contig2022:1733..6915+ (Halopteris paniculata Hal_grac_a_UBK monoicous) ATGTTGTTGGTAGACCGGGCTTTGACGCACGACGATGCCGTCAATCATCG ACAGGGAAAAGGGGGGACAAAGCTTAGAAATATAAAGATCAACAGCAGGA TGTTGTTGGTAGACCGGGCTTTGACGCACGACGATGCCGTCAATCATCGA CAGGGAAAAGGGGGGACAAAGCTTAGAAATATAAAGATCAACAGCAGGGA GGAGGCTTCTGCTCTTACTGGCGGTATAACCACAGATCATGTTTCTAGGC TTGTTATTTCGGGATTGGATCTGGATGCTTTGCCGGATGTCCTACTATCG GAAAAACATGACAGCTTAGCCGTGCTACATTTGCAGCGAAACGCATTGGT ACTCTTGCCCAGCGAGTTGTTCCTCAATCTCAAGGGGTTGCAGGAACTAG ACGGCAGCGAGGAGGAGGCTTCTGCTCTTACTGGCGGTATAACCACAGAT CATGTTTCTAGGCTTGTTATTTCGGGATTGGATCTGGATGCTTTGCCGGA TGTCCTACTATCGGAAAAACATGACAGCTTAGCCGTGCTACATTTGCAGC GAAACGCATTGGTACTCTTGCCCAGCGAGTTGTTCCTCAATCTCAAGGGG TTGCAGGAACTAGACGGCAGCGAGAACCGATTGTCCTACATACCAGAGAC AATTGGAACACTTTCCAACCTGCGCAAGCTTAGGCTGAGGGGCAACCAGC TTCGAGACTTGCCCGACGGGATTTGCCGACTGCGTGCGCTCCAGGAGCTA GATCTGAGCCAGAATCCCCTCAACCGATTGTCCTACATACCAGAGACAAT TGGAACACTTTCCAACCTGCGCAAGCTTAGGCTGAGGGGCAACCAGCTTC GAGACTTGCCCGACGGGATTTGCCGACTGCGTGCGCTCCAGGAGCTAGAT CTGAGCCAGAATCCCCTCGAAGTCCTTCCCGCGGGAATCGGGATGCTGCA GCGACTGACACGTATGGATTTGTCCGACAACAGTTGCTTACAAGAAATAC CGGATGAGGAAGTCCTTCCCGCGGGAATCGGGATGCTGCAGCGACTGACA CGTATGGATTTGTCCGACAACAGTTGCTTACAAGAAATACCGGATGAGGC TGGCCAACTTTTGGCATTGGACCACATAAACCTAAAGGGGACGCCCGTGA TTCGGATGCCGCTGGCTATTCAGCGACTAAAAACGAAGGCTGGCCAACTT TTGGCATTGGACCACATAAACCTAAAGGGGACGCCCGTGATTCGGATGCC GCTGGCTATTCAGCGACTAAAAACGAAGGGAGAGCTTCTTCGATGTAAGG CTCTCAGACGGAAGTTGGTGGGGAGGGCGCTGCACATCCGCTCCTCCGTC AGAAGGGCCTTCTTAGAGGAAGCCTTGATGCTCTGAGGAGAGCTTCTTCG ATGTAAGGCTCTCAGACGGAAGTTGGTGGGGAGGGCGCTGCACATCCGCT CCTCCGTCAGAAGGGCCTTCTTAGAGGAAGCCTTGATGCTCTGA back to top
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