mRNA_H-paniculata_contig2022.5220.1 (mRNA) Halopteris paniculata Hal_grac_a_UBK monoicous

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_H-paniculata_contig2022.5220.1
Unique NamemRNA_H-paniculata_contig2022.5220.1
TypemRNA
OrganismHalopteris paniculata Hal_grac_a_UBK monoicous (Halopteris paniculata Hal_grac_a_UBK monoicous)
Homology
BLAST of mRNA_H-paniculata_contig2022.5220.1 vs. uniprot
Match: D7G5C9_ECTSI (Hypothetical leucine rich repeat protein n=1 Tax=Ectocarpus siliculosus TaxID=2880 RepID=D7G5C9_ECTSI)

HSP 1 Score: 73.2 bits (178), Expect = 1.840e-12
Identity = 45/99 (45.45%), Postives = 63/99 (63.64%), Query Frame = 2
Query:   98 KINSREEASALTGGITTDHVSRLVISGLDLDALP-DVLLSEKHDSLAVLHLQRNALVLLPSELFLNLKGLQELDGSENRLSYIPETIGTLSNLRKLRLR 391
            K+ S   A AL         SRL ++ + +DALP D+  S +   + VL L+ NAL +LPSELFL +  L+E+D S+NR+SY+PETIG  + LRKL L+
Sbjct:   10 KVASNRVADALAA-----ESSRLSLARIGIDALPGDLTASNRVTHITVLDLKHNALQMLPSELFLCVTQLEEVDASKNRISYLPETIGLATGLRKLNLQ 103          
The following BLAST results are available for this feature:
BLAST of mRNA_H-paniculata_contig2022.5220.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 vs UniRef90)
Total hits: 1
Match NameE-valueIdentityDescription
D7G5C9_ECTSI1.840e-1245.45Hypothetical leucine rich repeat protein n=1 Tax=E... [more]
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Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
H-paniculata_contig2022contigH-paniculata_contig2022:1733..6915 +
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 vs UniRef902022-09-19
OGS1.0 of Halopteris paniculata Hal_grac_a_UBK monoicous2021-02-24
Properties
Property NameValue
Taxonomic scopeEukaryota
Seed ortholog score72.4
Seed ortholog evalue3.4e-10
Seed eggNOG ortholog2880.D7G5C9
Preferred nameLRRC59
Hectar predicted targeting categoryother localisation
GOsGO:0005575,GO:0005622,GO:0005623,GO:0005634,GO:0005635,GO:0005737,GO:0005739,GO:0005759,GO:0005783,GO:0005789,GO:0009295,GO:0012505,GO:0016020,GO:0031967,GO:0031974,GO:0031975,GO:0031984,GO:0042175,GO:0042645,GO:0043226,GO:0043227,GO:0043228,GO:0043229,GO:0043231,GO:0043232,GO:0043233,GO:0044422,GO:0044424,GO:0044425,GO:0044428,GO:0044429,GO:0044432,GO:0044444,GO:0044446,GO:0044464,GO:0070013,GO:0098827
EggNOG free text desc.Leucine rich repeat
EggNOG OGsCOG4886@1,KOG0473@2759
COG Functional cat.U
Best tax levelEukaryota
Best eggNOG OGNA|NA|NA
Exons6
Model size861
Cds size747
Stop1
Start1
Relationships

The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_H-paniculata_contig2022.5220.1prot_H-paniculata_contig2022.5220.1Halopteris paniculata Hal_grac_a_UBK monoicouspolypeptideH-paniculata_contig2022 1746..6814 +


The following UTR feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1622929522.0626693-UTR-H-paniculata_contig2022:1732..17451622929522.0626693-UTR-H-paniculata_contig2022:1732..1745Halopteris paniculata Hal_grac_a_UBK monoicousUTRH-paniculata_contig2022 1733..1745 +
1691480897.0576184-UTR-H-paniculata_contig2022:1732..17451691480897.0576184-UTR-H-paniculata_contig2022:1732..1745Halopteris paniculata Hal_grac_a_UBK monoicousUTRH-paniculata_contig2022 1733..1745 +
1622929522.1687288-UTR-H-paniculata_contig2022:6814..69151622929522.1687288-UTR-H-paniculata_contig2022:6814..6915Halopteris paniculata Hal_grac_a_UBK monoicousUTRH-paniculata_contig2022 6815..6915 +
1691480897.1285565-UTR-H-paniculata_contig2022:6814..69151691480897.1285565-UTR-H-paniculata_contig2022:6814..6915Halopteris paniculata Hal_grac_a_UBK monoicousUTRH-paniculata_contig2022 6815..6915 +


The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1622929522.081158-CDS-H-paniculata_contig2022:1745..18441622929522.081158-CDS-H-paniculata_contig2022:1745..1844Halopteris paniculata Hal_grac_a_UBK monoicousCDSH-paniculata_contig2022 1746..1844 +
1691480897.069237-CDS-H-paniculata_contig2022:1745..18441691480897.069237-CDS-H-paniculata_contig2022:1745..1844Halopteris paniculata Hal_grac_a_UBK monoicousCDSH-paniculata_contig2022 1746..1844 +
1622929522.0955772-CDS-H-paniculata_contig2022:2234..24471622929522.0955772-CDS-H-paniculata_contig2022:2234..2447Halopteris paniculata Hal_grac_a_UBK monoicousCDSH-paniculata_contig2022 2235..2447 +
1691480897.078225-CDS-H-paniculata_contig2022:2234..24471691480897.078225-CDS-H-paniculata_contig2022:2234..2447Halopteris paniculata Hal_grac_a_UBK monoicousCDSH-paniculata_contig2022 2235..2447 +
1622929522.1100268-CDS-H-paniculata_contig2022:4216..43631622929522.1100268-CDS-H-paniculata_contig2022:4216..4363Halopteris paniculata Hal_grac_a_UBK monoicousCDSH-paniculata_contig2022 4217..4363 +
1691480897.0897136-CDS-H-paniculata_contig2022:4216..43631691480897.0897136-CDS-H-paniculata_contig2022:4216..4363Halopteris paniculata Hal_grac_a_UBK monoicousCDSH-paniculata_contig2022 4217..4363 +
1622929522.1258023-CDS-H-paniculata_contig2022:4998..50881622929522.1258023-CDS-H-paniculata_contig2022:4998..5088Halopteris paniculata Hal_grac_a_UBK monoicousCDSH-paniculata_contig2022 4999..5088 +
1691480897.1003034-CDS-H-paniculata_contig2022:4998..50881691480897.1003034-CDS-H-paniculata_contig2022:4998..5088Halopteris paniculata Hal_grac_a_UBK monoicousCDSH-paniculata_contig2022 4999..5088 +
1622929522.1430452-CDS-H-paniculata_contig2022:5644..57341622929522.1430452-CDS-H-paniculata_contig2022:5644..5734Halopteris paniculata Hal_grac_a_UBK monoicousCDSH-paniculata_contig2022 5645..5734 +
1691480897.1089597-CDS-H-paniculata_contig2022:5644..57341691480897.1089597-CDS-H-paniculata_contig2022:5644..5734Halopteris paniculata Hal_grac_a_UBK monoicousCDSH-paniculata_contig2022 5645..5734 +
1622929522.1553402-CDS-H-paniculata_contig2022:6706..68141622929522.1553402-CDS-H-paniculata_contig2022:6706..6814Halopteris paniculata Hal_grac_a_UBK monoicousCDSH-paniculata_contig2022 6707..6814 +
1691480897.1179407-CDS-H-paniculata_contig2022:6706..68141691480897.1179407-CDS-H-paniculata_contig2022:6706..6814Halopteris paniculata Hal_grac_a_UBK monoicousCDSH-paniculata_contig2022 6707..6814 +


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_H-paniculata_contig2022.5220.1

>prot_H-paniculata_contig2022.5220.1 ID=prot_H-paniculata_contig2022.5220.1|Name=mRNA_H-paniculata_contig2022.5220.1|organism=Halopteris paniculata Hal_grac_a_UBK monoicous|type=polypeptide|length=249bp
MLLVDRALTHDDAVNHRQGKGGTKLRNIKINSREEASALTGGITTDHVSR
LVISGLDLDALPDVLLSEKHDSLAVLHLQRNALVLLPSELFLNLKGLQEL
DGSENRLSYIPETIGTLSNLRKLRLRGNQLRDLPDGICRLRALQELDLSQ
NPLEVLPAGIGMLQRLTRMDLSDNSCLQEIPDEAGQLLALDHINLKGTPV
IRMPLAIQRLKTKGELLRCKALRRKLVGRALHIRSSVRRAFLEEALML*
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mRNA from alignment at H-paniculata_contig2022:1733..6915+

Legend: UTRpolypeptideCDS
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_H-paniculata_contig2022.5220.1 ID=mRNA_H-paniculata_contig2022.5220.1|Name=mRNA_H-paniculata_contig2022.5220.1|organism=Halopteris paniculata Hal_grac_a_UBK monoicous|type=mRNA|length=5183bp|location=Sequence derived from alignment at H-paniculata_contig2022:1733..6915+ (Halopteris paniculata Hal_grac_a_UBK monoicous)
ATTGGGAGCTGCGATGTTGTTGGTAGACCGGGCTTTGACGCACGACGATG CCGTCAATCATCGACAGGGAAAAGGGGGGACAAAGCTTAGAAATATAAAG ATCAACAGCAGGGTAAGGTCGGCGCGATATATGAGTAATTCAGCTCTTGG CGATGATGTTTAGCCTTGCAACTGCCACGTGTAGTACTGACCATCATCAG CGTGCTGTACTGTACTGTACTGTACTGTAGTACAACAGTCCCGTGTGCCG TGCAGAACAACTCCACTACGCCCGCCGGTCTGTGCTATGATGGTTTGTAA AGTATTACATGTAGTCAATCACATGATCCAGACTATGTTTTTATGTAAAT ATTTGCACACAGTCTTGAAGTTGTCGTGAGGTTAACCTTCAGGCACAAAC ATGATAGGTACACCATGAATGACTAACTACATTACGCTGTAGACCCGTGC ATGTCTGTTGCGGTACCGCGCTGCTCGCCACTGTTTACCACCATCCATTC AGGAGGAGGCTTCTGCTCTTACTGGCGGTATAACCACAGATCATGTTTCT AGGCTTGTTATTTCGGGATTGGATCTGGATGCTTTGCCGGATGTCCTACT ATCGGAAAAACATGACAGCTTAGCCGTGCTACATTTGCAGCGAAACGCAT TGGTACTCTTGCCCAGCGAGTTGTTCCTCAATCTCAAGGGGTTGCAGGAA CTAGACGGCAGCGAGGTACGTGCTCAACAATGTTCAAGCTTGGAAATCGC GACATCGAATTGGTGGAAGCTGGACATCAGTTCCATGATCTGAGCCTACG TTTCAATGGATAGTTGCGTCACGATGACGACAAACCAACCTAAGGCCCTT GAAAGGCACTAGTGTCGGTCGGTTTGGTGTTTTTTAGCTCAAGGCACCAT TTGGGGTAGCTGCGCGCTATGCCGAAGTCCCTCTCCACAGTAGTTCAGTT TTGGAAACATCTACTTTTGATGTTCGCCCCATCGGCATCGTAGCGTACTC CTAAATGTGTTGGTACATTTTGAGACAGAAAAACTCGTTCACGAGGATAA TTAGAGCTACGTCGATTGATGCGCCTTGGTGACTGTTGACGAATGTCATC TGTTTTTTCGAGGTTCATAATTGACCCACGTTGCAGCGACTCTACGAAAA AGTAAATCTGAAGGAACAAGCACACCCCGAAAGCCAACGAAAACCAAAGA AAAAGGAAAACCAGGGTTCGTGGGGGGGGGGGGGGTATATGCCCACAACA ATAACTCGAGCTTTAGTGTTGCCACTGAATCAAGACCAATGAGCCGGGCG TGTTACAGGCAGCCGGGAAATGAACCGCCTTGTGACAAGTAGCGACAGTG AGAGCACTAACTGGGTTGAGTTGGGCGTGCCGCGCACGAATACTTCAGTT GAATGTTTTAAGTACCCACTATACATATATAGATGTGTCGCAGGCGAACA CGTTTCTTGTCTGCACCACGCCATAGTGCCCGTTAAGCTAAAGGTAACAA ATTGAGCAATTTCCTACAACTGTAAAGAGCTTCTATCTTCATAACCCTCC CCCTCCTTTAGACGCTGCACTTCTTTATGAAGTGAAGAAGGTCATAGATC GCCGCCTCCCCCACTATATGTAGCGCGGATGGATGAAATCACGTATCTCC CACCAATTTAGAGGCCAGAAGGTAATCGTGTGATGTCTTTTTTGGAGAAG AAACGACTCTGCCAGGATGAACCTGGGTCCTTGCGGCGACGCCAAATGTC GTAGTGCCCATTTAGCTAAAGGTAAAAGTTTAACCAATTTCCCACAACTG CAAGGATTTTCTATCCTCACAACAACCAACCCTTCTATAGCCGAATCAAT TCGAACACAAGAATGCGAACACAAGCAGGGAGAGTAGCACACACATCGAC ATAAAATAGATAATACACGTCGCAATGACCTTACTCTAAATCTATCACCC ATGAAGAAACTTCACGAGCCAGCCAGGTTTCCAACCTTCAATCGTCCTCT GACTCTATCCAAAAATGTCATAACCTTCAATTTGCGACATGATTTTCCGT TCTTCAAGCGTTTTCTGCGAGCTTGTGAACGCCACGAGCTTGAAACAAAA ACATACCAACCAAAATGTACCGGTAGTGTTTCACAAAAATACGAGTTAAG GCAGGGTTTGAGGGAGGTTGGGATTCCAGAATATCACTTTTGAGAGCCAG CCCCTTGCACGTTGGGTGCGGACTGGTATGAACCCGAAGCATGAGTTCTT TGAACTTTACTACTAGCTGCGTAAGAGAACACATCAAGGACGCAAGCGGA GATTTCCATACTCGGCACTTATTTGATTCTACATCCACTTATCCGAGGCG GATACCAGCTACGTTTGCGACGACACATATAACCTCGCAGGATTCACATG GCATCACTGGCTGGCGTAGCTGACACGGTATTCACATGTCGTTCCCCCCG CGATATTGTGTCAATGCGCTTACATTGCTCACAGAACCGATTGTCCTACA TACCAGAGACAATTGGAACACTTTCCAACCTGCGCAAGCTTAGGCTGAGG GGCAACCAGCTTCGAGACTTGCCCGACGGGATTTGCCGACTGCGTGCGCT CCAGGAGCTAGATCTGAGCCAGAATCCCCTCGTAAGTTCAAATTTGCGTA TTGCCAGTCGTTCCACGCTTAGTGATTCTTGTCTAACTTTGCGTTAGGAT CCTTGTGCGGGAAGGGCAGGGAAGGTTTTAGGGTGTGAAAACGGAATTAT CACCCAGAGCCGGCGCCATATCCCAGTGCTTGGCACCCGTTTGAAGACTG TATGTTGCAGCAAACCATTACTGGGTCGTCTTCAAGGGTACGAAACTTCA CAACCGCGATACATGTGATCAGAAAACAACAAGGAACCGGCAAGACCCCC AACAAGCTGCAAGTGTACGCGTCACAACACAAAAGGTGAAGCAATAGGTT GTATGCGTGCGAAGGGTCAACCGTTTTAATGGCCGATTGAAAACAACACC GTGAAGTTGGCGTGCAACGCTGCACGAGTCAGACGTTAGCATTTGCAGTG TTTTTGCGTTTATTTCATGTATAATCGTGGGCGAGGTATGTCCCACGCTG TTCTCGTTCTCACTCTGTCACATATTTCGAGTGCGCAAAGACCGATCGAA CGTCGGCGCCACTCCTAAAAGACCCCAACAACCGTTCCGGTAGCTCTTTC TTGTCTTCGTCCCCGCACAGCTTCACGCTCGGCTTCTCCCATATGTGCCC TCTGTAAGAATGGCAGGAAGTCCTTCCCGCGGGAATCGGGATGCTGCAGC GACTGACACGTATGGATTTGTCCGACAACAGTTGCTTACAAGAAATACCG GATGAGGTAGGTGCTTTGTACCCCAAGATGAATATACTCTGGAGTATATT GTTTTTTCAATCGGAAACGTCATTTCGAACCGCCCTTGCTCCATGTAGGT TCTGAGCAATATTTCGCTGCCCGTGAAATTTTGCTGTAGCTATTACTGTC AACGAGTTGCAGGAATCTGTTCCTCAGGTCATGGCATAATCTGATGTGGG AATATACGCACCTGAATGCGCTGTTGTTCGAAAATGGGCGGCATTTGTTT ACAATCGCACATAGCGCTACTGAGTGAGTAACTACAGTAGGATATATGGG CGAGCCTAGTATGCAATTGAATATTGGCTGCCAACCACTCACGCGTGGAT CATAAGCAAGACACTAAGCTCACATGCTTCAAGATGTATGGATTGGCCCT GCCTTAATTTCCTTGTGTTATTGCAGCTCCGTAGTCGACCCTTTGAGAAG GAACAGCGCTGACTCCTCCTGAGCACAGATTGTCGTGGTACAAAATAGCA TGCAATTGTTGTTACATACACTACATGACACAGCACGCTTGTGTCGTTTG CAATGGGCTCAGGCTGGCCAACTTTTGGCATTGGACCACATAAACCTAAA GGGGACGCCCGTGATTCGGATGCCGCTGGCTATTCAGCGACTAAAAACGA AGGTACGAGCTACTAGGTCTCTCTTGTATTAATATAGTAGGTGGGGGATG GGGAGGAATACAAGGAAAATGTACCCTGGTACCACGTTCTAAACGTTCAA AATCACGCCGGAGATATGTGTTTGAAGATGCCAGGAGCTCAACGATGACA GCCAATAATAACTTTCAAGTGGCTTCGATCGAAGAGTGCTAACCTTCGCC GATAGGTTATTTTCGACCGTGTGTTTTATGTGTTCGCTGTGGACAAGGAA TCGCCGAGCTGACAAACCGTATTCGACCGAAATACATGTTACGATGGGAG AAACTTACGGTTTTCGGGGAAAAACCGACGTAAGCATTTTGCTGCTGGCG TTTTGTTGTCCACGATAGAGTAGTCTTCCACTGGATTGAGTTTTCGGTCA GTCATGACTACAAGTATATTTCCGTACTTCAACCCTTTCATTTGATATTG CTACATATAGAGATCGTATCGGTGAGTGAATGCACTAACTGCTCGACGTT TGGGGTATCGGCGGTGTCGTTCTATTCACAGCGCTACAGTAGCGTTAACC AATCTGCTTGTCTACAAATCATAACTGATGACTGGGTAATCGCAACACTT CGCGTTTTAAAAACGCCCTCAAAAACTGGGATCGAAGCGGACTTGGCCTT CATGCCAAATAATTACCAATGCTTCGAATACGATGAAAATAAATAACCGG ATGCGCCCGTAGCTGACTTGTGACGAGCACCGAGGTGTTCACAATGCTTT GTGTTTTGCTTGGCCATGCTCTATGAGATTGGAAAAAGCATGCTTGGTGC ATTGAGAGCTCTGTTGCTGTATAGACCTGCAATGAACCAAATCTGTGCCA CACCCATGATGGGTACATGTGTCACCGAGCTATAGGGTTCCTACTGCGTA CACTCAACGAGCTGACCTACTGGCGTTATAGTAAATGTCTCACCATATTG CTACGTTTGCCGCTGGTCGCACAGGGAGAGCTTCTTCGATGTAAGGCTCT CAGACGGAAGTTGGTGGGGAGGGCGCTGCACATCCGCTCCTCCGTCAGAA GGGCCTTCTTAGAGGAAGCCTTGATGCTCTGAGACCGGAAGAGTCACGGA GACTATTTAGCCGTTTGCCGTGTGACAAAAAATTCTTGGAAATGAATGCA CTTGAAGATCATCCCGATATAGGGATAGCCGAC
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Coding sequence (CDS) from alignment at H-paniculata_contig2022:1733..6915+

>mRNA_H-paniculata_contig2022.5220.1 ID=mRNA_H-paniculata_contig2022.5220.1|Name=mRNA_H-paniculata_contig2022.5220.1|organism=Halopteris paniculata Hal_grac_a_UBK monoicous|type=CDS|length=1494bp|location=Sequence derived from alignment at H-paniculata_contig2022:1733..6915+ (Halopteris paniculata Hal_grac_a_UBK monoicous)
ATGTTGTTGGTAGACCGGGCTTTGACGCACGACGATGCCGTCAATCATCG
ACAGGGAAAAGGGGGGACAAAGCTTAGAAATATAAAGATCAACAGCAGGA
TGTTGTTGGTAGACCGGGCTTTGACGCACGACGATGCCGTCAATCATCGA
CAGGGAAAAGGGGGGACAAAGCTTAGAAATATAAAGATCAACAGCAGGGA
GGAGGCTTCTGCTCTTACTGGCGGTATAACCACAGATCATGTTTCTAGGC
TTGTTATTTCGGGATTGGATCTGGATGCTTTGCCGGATGTCCTACTATCG
GAAAAACATGACAGCTTAGCCGTGCTACATTTGCAGCGAAACGCATTGGT
ACTCTTGCCCAGCGAGTTGTTCCTCAATCTCAAGGGGTTGCAGGAACTAG
ACGGCAGCGAGGAGGAGGCTTCTGCTCTTACTGGCGGTATAACCACAGAT
CATGTTTCTAGGCTTGTTATTTCGGGATTGGATCTGGATGCTTTGCCGGA
TGTCCTACTATCGGAAAAACATGACAGCTTAGCCGTGCTACATTTGCAGC
GAAACGCATTGGTACTCTTGCCCAGCGAGTTGTTCCTCAATCTCAAGGGG
TTGCAGGAACTAGACGGCAGCGAGAACCGATTGTCCTACATACCAGAGAC
AATTGGAACACTTTCCAACCTGCGCAAGCTTAGGCTGAGGGGCAACCAGC
TTCGAGACTTGCCCGACGGGATTTGCCGACTGCGTGCGCTCCAGGAGCTA
GATCTGAGCCAGAATCCCCTCAACCGATTGTCCTACATACCAGAGACAAT
TGGAACACTTTCCAACCTGCGCAAGCTTAGGCTGAGGGGCAACCAGCTTC
GAGACTTGCCCGACGGGATTTGCCGACTGCGTGCGCTCCAGGAGCTAGAT
CTGAGCCAGAATCCCCTCGAAGTCCTTCCCGCGGGAATCGGGATGCTGCA
GCGACTGACACGTATGGATTTGTCCGACAACAGTTGCTTACAAGAAATAC
CGGATGAGGAAGTCCTTCCCGCGGGAATCGGGATGCTGCAGCGACTGACA
CGTATGGATTTGTCCGACAACAGTTGCTTACAAGAAATACCGGATGAGGC
TGGCCAACTTTTGGCATTGGACCACATAAACCTAAAGGGGACGCCCGTGA
TTCGGATGCCGCTGGCTATTCAGCGACTAAAAACGAAGGCTGGCCAACTT
TTGGCATTGGACCACATAAACCTAAAGGGGACGCCCGTGATTCGGATGCC
GCTGGCTATTCAGCGACTAAAAACGAAGGGAGAGCTTCTTCGATGTAAGG
CTCTCAGACGGAAGTTGGTGGGGAGGGCGCTGCACATCCGCTCCTCCGTC
AGAAGGGCCTTCTTAGAGGAAGCCTTGATGCTCTGAGGAGAGCTTCTTCG
ATGTAAGGCTCTCAGACGGAAGTTGGTGGGGAGGGCGCTGCACATCCGCT
CCTCCGTCAGAAGGGCCTTCTTAGAGGAAGCCTTGATGCTCTGA
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