mRNA_H-paniculata_contig20204.5214.1 (mRNA) Halopteris paniculata Hal_grac_a_UBK monoicous

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_H-paniculata_contig20204.5214.1
Unique NamemRNA_H-paniculata_contig20204.5214.1
TypemRNA
OrganismHalopteris paniculata Hal_grac_a_UBK monoicous (Halopteris paniculata Hal_grac_a_UBK monoicous)
Homology
BLAST of mRNA_H-paniculata_contig20204.5214.1 vs. uniprot
Match: D7FMS2_ECTSI (Uncharacterized protein n=2 Tax=Ectocarpus TaxID=2879 RepID=D7FMS2_ECTSI)

HSP 1 Score: 329 bits (844), Expect = 1.320e-108
Identity = 152/204 (74.51%), Postives = 173/204 (84.80%), Query Frame = 1
Query:    4 LQLAEPFDGMERGELITPLLAQHIQKNFNTVVVLQCGRSSGPKYGQNLLDIAQTINALGAPFLHQNEDIAEDVEVGDAGIDPPDFGWYVDQAEVSQVLDAWVDLRRNIIKRPFLATSEKFVDTCGADVFVASAFHPSYGEKMIECAETATDFKGCIVVRKGLEGTLGFGLGRNAEVMCGVRKKDGSYERMTYEFGPSDLGWEME 615
            +QLAEPFDGM+RGEL+TPLLAQH+Q  FN V V QCGRSSGPKYGQNLLDIA  + +L  PF+H N DI  DVEVG+ GIDPP+FGWYVDQ E+S  LDAWVDLRRNIIKRPFLATSEKF++TCGA V VASAFHPSY EKM+ CAETATDFKGC+VVRKGLEG+LGFGL R  E++CGVRK DGS+E+M+Y F   D+GWE E
Sbjct:  250 VQLAEPFDGMDRGELLTPLLAQHLQSKFNVVAVSQCGRSSGPKYGQNLLDIATGMTSLSTPFVHSNSDIERDVEVGNGGIDPPEFGWYVDQQEISLELDAWVDLRRNIIKRPFLATSEKFINTCGASVLVASAFHPSYAEKMMTCAETATDFKGCMVVRKGLEGSLGFGLARETEIVCGVRKDDGSFEKMSYTFAAKDMGWEKE 453          
BLAST of mRNA_H-paniculata_contig20204.5214.1 vs. uniprot
Match: A0A835YNK2_9STRA (Uncharacterized protein n=1 Tax=Tribonema minus TaxID=303371 RepID=A0A835YNK2_9STRA)

HSP 1 Score: 233 bits (594), Expect = 1.410e-71
Identity = 114/201 (56.72%), Postives = 145/201 (72.14%), Query Frame = 1
Query:    1 LLQLAEPFDGMERGELITPLLAQHIQKNFNTVVVLQCGRSSGPKYGQNLLDIAQTINALGAPFLHQNEDIAEDVEVGDAGIDPPDFGWYVDQAEVSQVLDAWVDLRRNIIKRPFLATSEKFVDTCGADVFVASAFHPSYGEKMIECAETATDFKGCIVVRKGLEGTLGFGLGRNAEVMCGVRKKDGSYERMTYEFGPSDLG 603
            ++QLAEPFDG++R  L+TPL+A+H+Q+ +  + V Q G +SGPKYG N  D+A  + A  APF+  N ++A    V  +G   P++G Y+DQ  VS  L  WV LRRNIIKRPFLATSEK VD+CGA V +ASAFHPS+ +KM   AE AT F  CI+VR+GLEGTLGFGLG+ AEV CGVR  DG +ERM + FGP D+G
Sbjct:  202 IVQLAEPFDGIDRSPLLTPLIARHLQRRWRALAVTQVGPTSGPKYGPNARDLALALGADEAPFMRSNAEVAW--RVARSGY-LPEYGMYIDQEAVSPALAEWVTLRRNIIKRPFLATSEKLVDSCGASVLIASAFHPSFTDKMFNMAEDATAFPACIIVRRGLEGTLGFGLGKPAEVTCGVRGSDGRFERMDFAFGPKDIG 399          
BLAST of mRNA_H-paniculata_contig20204.5214.1 vs. uniprot
Match: A0A6T7WU54_9CRYP (Hypothetical protein (Fragment) n=1 Tax=Cryptomonas curvata TaxID=233186 RepID=A0A6T7WU54_9CRYP)

HSP 1 Score: 216 bits (549), Expect = 8.380e-66
Identity = 107/201 (53.23%), Postives = 137/201 (68.16%), Query Frame = 1
Query:    1 LLQLAEPFDGMERGELITPLLAQHIQKNFNTVVVLQCGRSSGPKYGQNLLDIAQTINALGAPFLHQNEDIAEDVEVGDAGIDPPDFGWYVDQAEVSQVLDAWVDLRRNIIKRPFLATSEKFVDTCGADVFVASAFHPSYGEKMIECAETATDFKGCIVVRKGLEGTLGFGLGRNAEVMCGVRKKDGSYERMTYEFGPSDLG 603
            L+QLAEPFDG  R E   PL+A+H+Q+ +  VVV QCG SSGPKYG NLL +A  ++   AP    N DIAE      AG D P FGWYV Q + S  L  W  +RRN++KRPFLAT+EK++DT GA V +ASAFHPS+ +KM   AE A+ F+ C++VR+G EG+LG  L R AE +CG R+ DG+ ER  + FGP+D G
Sbjct:  120 LVQLAEPFDGTHRSESFAPLIARHLQQRWGAVVVSQCGPSSGPKYGPNLLQLALALSP-DAPLAASNLDIAE------AGADQPAFGWYVTQGDASGGLGRWGPIRRNVVKRPFLATAEKYLDTAGAGVLLASAFHPSFSDKMFLMAERASAFEACVIVRRGCEGSLGLSLARPAEFVCGRRRPDGTMERFDFAFGPADAG 313          
BLAST of mRNA_H-paniculata_contig20204.5214.1 vs. uniprot
Match: A0A1G1P5S8_9BACT (Uncharacterized protein n=1 Tax=Omnitrophica WOR_2 bacterium RIFCSPHIGHO2_02_FULL_50_17 TaxID=1801857 RepID=A0A1G1P5S8_9BACT)

HSP 1 Score: 181 bits (458), Expect = 1.980e-52
Identity = 98/206 (47.57%), Postives = 134/206 (65.05%), Query Frame = 1
Query:    1 LLQLAEPFDGMERGELITPLLAQHIQKNFNTVVVLQCGRSSGPKYGQNLLDIAQTINALGAPFLHQNEDIAEDVEVGDAGIDPPDFGWYVDQAEVSQVLDAWVDLRRNIIKRPFLATSEKFVDTCGADVFVASAFHPSYGEKMIECAETATDFKGCIVVRKGLEGTLGFGLGRNAEVMCGVRKKDGSYERMTYEFGP-SDLGWEME 615
            ++Q+AEPFDG+++  ++TPLLA+H+Q     VV L  GR+SGPK+G NLLD+A+    L A FL +N D+             PD+GWY+ Q  +S+ +D WV+LR  IIKRPFLAT E+FV+   A + +ASAFHP Y EKM+   E A  + G I+VR GLEGTL F L R+ +++C VR +DGSY R   E+ P   LG  +E
Sbjct:  104 IVQIAEPFDGVDQSYMVTPLLARHVQILGYRVVSL-VGRNSGPKFGNNLLDVAE---GLQAQFLKRNVDLK---------CPKPDYGWYIHQKNLSRGMDRWVELRLQIIKRPFLATLERFVNPVRAQMIIASAFHPPYAEKMVTVGEGA-GYSGIIIVRNGLEGTLAFPLLRSVKILCSVRGRDGSYRRQELEWNPRQSLGARIE 295          
BLAST of mRNA_H-paniculata_contig20204.5214.1 vs. uniprot
Match: A0A1G1NX68_9BACT (Uncharacterized protein n=1 Tax=Omnitrophica WOR_2 bacterium RIFCSPHIGHO2_02_FULL_52_10 TaxID=1801858 RepID=A0A1G1NX68_9BACT)

HSP 1 Score: 169 bits (428), Expect = 3.280e-47
Identity = 90/200 (45.00%), Postives = 127/200 (63.50%), Query Frame = 1
Query:    1 LLQLAEPFDGMERGELITPLLAQHIQKNFNTVVVLQCGRSSGPKYGQNLLDIAQTINALGAPFLHQNEDIAEDVEVGDAGIDPPDFGWYVDQAEVSQVLDAWVDLRRNIIKRPFLATSEKFVDTCGADVFVASAFHPSYGEKMIECAETATDFKGCIVVRKGLEGTLGFGLGRNAEVMCGVRKKDGSYERMTYEFGPSDL 600
            ++QLAEPFDG++   +ITPL+AQ IQ+  N  VV   GR+SGPK+G NLLD+A+   AL   FL  +  +A++          P +GW+V+Q  +S  +D WV+ R   IKRPFL+T E+F++   A + ++SAFHP YGEKM+   E A  F G I+VR GLEGTL F L R A+++C  R+ DG+Y+R      P + 
Sbjct:  174 IVQLAEPFDGVDHSNMITPLIAQFIQR-LNYRVVSHTGRNSGPKFGNNLLDLAK---ALRGRFLLSSSALADEA---------PAYGWFVNQQNLSPPIDQWVERRHQTIKRPFLSTLERFLNPFNAHIHISSAFHPPYGEKMLTICERA-GFPGSIIVRNGLEGTLAFPLTRPAKLLCSARQADGTYKRTELILRPEEF 359          
BLAST of mRNA_H-paniculata_contig20204.5214.1 vs. uniprot
Match: A0A3B0W5T9_9ZZZZ (Uncharacterized protein n=1 Tax=hydrothermal vent metagenome TaxID=652676 RepID=A0A3B0W5T9_9ZZZZ)

HSP 1 Score: 167 bits (424), Expect = 9.940e-47
Identity = 90/200 (45.00%), Postives = 126/200 (63.00%), Query Frame = 1
Query:    1 LLQLAEPFDGMERGELITPLLAQHIQKNFNTVVVLQCGRSSGPKYGQNLLDIAQTINALGAPFLHQNEDIAEDVEVGDAGIDPPDFGWYVDQAEVSQVLDAWVDLRRNIIKRPFLATSEKFVDTCGADVFVASAFHPSYGEKMIECAETATDFKGCIVVRKGLEGTLGFGLGRNAEVMCGVRKKDGSYERMTYEFGPSDL 600
            ++Q++EPFDG  R   ITPL+A  +Q N     V   GR+SGPK+  NLL+IAQ   AL   FL+  E++ +           PD+GWY+ Q  +S  +DAWV+ R  IIKRPFLAT E+F++  GA + + SAFHP+Y E M+  A+TA  + G IVV+ GLEG L F L R A++ C VRK+D +YE+  + F  +D+
Sbjct:  169 IVQISEPFDGFNRSYFITPLIASAVQ-NLGFRAVSLVGRNSGPKFATNLLNIAQ---ALDTSFLNTAEELNKP---------KPDYGWYIHQKNISPAIDAWVEHRHQIIKRPFLATLERFINPVGAKILITSAFHPNYVETMLSIAQTA-GYAGIIVVQYGLEGGLTFPLRRPAKLFCSVRKQDKTYEQKKFTFDATDI 354          
BLAST of mRNA_H-paniculata_contig20204.5214.1 vs. uniprot
Match: A0A1G1NBX9_9BACT (Uncharacterized protein n=1 Tax=Omnitrophica WOR_2 bacterium RIFCSPHIGHO2_02_FULL_48_11 TaxID=1801856 RepID=A0A1G1NBX9_9BACT)

HSP 1 Score: 162 bits (409), Expect = 1.880e-44
Identity = 89/190 (46.84%), Postives = 116/190 (61.05%), Query Frame = 1
Query:    1 LLQLAEPFDGMERGELITPLLAQHIQKNFNTVVVLQCGRSSGPKYGQNLLDIAQTINALGAPFLHQNEDIAEDVEVGDAGIDPPDFGWYVDQAEVSQVLDAWVDLRRNIIKRPFLATSEKFVDTCGADVFVASAFHPSYGEKMIECAETATDFKGCIVVRKGLEGTLGFGLGRNAEVMCGVRKKDGSYER 570
            L+QLAEPFDG++   + TPLLAQ++Q     V+ L  GR+SGPK G NLLD+A+   AL  P    N D+             P +GWY +Q  +S  LD WV+LRR  +KRP  AT EKF++   A + + SAFHP Y EKM   AE A  F   IV+R GLEGTL F L R  +++C  R+KDG+Y+R
Sbjct:  174 LVQLAEPFDGVDHSYITTPLLAQYVQSLGYRVINL-VGRNSGPKVGNNLLDLAK---ALQIPLAAGNADLKNS---------KPSYGWYFNQENLSAPLDHWVELRRQTVKRPCFATLEKFLNPAQAQIIITSAFHPPYSEKMTTVAERA-GFPASIVIRNGLEGTLAFPLMRPVKILCSARQKDGTYQR 349          
BLAST of mRNA_H-paniculata_contig20204.5214.1 vs. uniprot
Match: A0A1G1LML3_9BACT (Uncharacterized protein n=1 Tax=Omnitrophica WOR_2 bacterium GWA2_47_8 TaxID=1801840 RepID=A0A1G1LML3_9BACT)

HSP 1 Score: 160 bits (405), Expect = 7.320e-44
Identity = 91/203 (44.83%), Postives = 126/203 (62.07%), Query Frame = 1
Query:    1 LLQLAEPFDGMERGELITPLLAQHIQKNFNTVVVLQCGRSSGPKYGQNLLDIAQTINALGAPFLHQNEDIAEDVEVGDAGIDP-PDFGWYVDQAEVSQVLDAWVDLRRNIIKRPFLATSEKFVDTCGADVFVASAFHPSYGEKMIECAETATDFKGCIVVRKGLEGTLGFGLGRNAEVMCGVRKKDGSYERMTYEFGP-SDLG 603
            ++QLAEPFDG+++  +ITPL+AQ++Q     VV L  GR+SGPK+G N LD+AQ   AL  P    N+++          ++P P FGWY++Q ++S+ LD WV+ R  I+KRP  AT EKF++   A + + SAFH  Y EKM   AE A  F   IV+R GLEG+L F L R  +++C  R+KDGSY R      P +D G
Sbjct:  173 IIQLAEPFDGVDQSYMITPLVAQYLQAQNYRVVNLT-GRNSGPKFGNNALDLAQ---ALNIPLAKGNQEL----------VNPKPAFGWYINQPDLSKSLDQWVERRWAIVKRPCFATLEKFLNPVKAQIIITSAFHAPYSEKMTRIAENA-GFPASIVIRNGLEGSLAFPLMRPVKLLCSARQKDGSYLREEITLDPQADFG 360          
BLAST of mRNA_H-paniculata_contig20204.5214.1 vs. uniprot
Match: UPI000E0AB2C1 (anthranilate phosphoribosyltransferase n=1 Tax=Botryobacter ruber TaxID=2171629 RepID=UPI000E0AB2C1)

HSP 1 Score: 157 bits (397), Expect = 1.080e-42
Identity = 89/194 (45.88%), Postives = 120/194 (61.86%), Query Frame = 1
Query:    1 LLQLAEPFDGMERGELITPLLAQHIQKNFNTVVVLQCGRSSGPKYGQNLLDIAQTINALGAPFLHQNEDIAEDVEVGDAGIDPPDFGWYVDQAEVSQVLDAWVDLRRNIIKRPFLATSEKFVDTCGADVFVASAFHPSYGEKMIECAETATDFKGCIVVRKGLEGTLGFGLGRNAEVMCGVRKKDGSYERMTYE 582
            L+QLAEPFDG+E   +ITP+LA H+ +     VV+  GRS+GPKY  N LDI +    L APFL QN D+A+           P +GW +DQ  +S  LD WVD RR I KRPFLAT EK ++ C A + V S FH +Y +KMI  A  A  F G IV+++GLEGTL   + + + + C VR+ DGS+   +++
Sbjct:  170 LVQLAEPFDGVEHSYMITPILA-HVFQEAGYPVVVSMGRSAGPKYALNTLDIYKE---LEAPFLQQNSDLAKPA---------PKYGWALDQQVLSPALDQWVDRRRLIFKRPFLATLEKVLNPCHAGILVTSVFHITYIDKMITLAGMA-GFSGVIVLKRGLEGTLVPSIAKASGITCAVRQPDGSFLTQSFD 349          
BLAST of mRNA_H-paniculata_contig20204.5214.1 vs. uniprot
Match: A0A6C0GGW9_9BACT (Anthranilate phosphoribosyltransferase n=1 Tax=Rhodocytophaga rosea TaxID=2704465 RepID=A0A6C0GGW9_9BACT)

HSP 1 Score: 157 bits (396), Expect = 1.670e-42
Identity = 88/194 (45.36%), Postives = 120/194 (61.86%), Query Frame = 1
Query:    1 LLQLAEPFDGMERGELITPLLAQHIQKNFNTVVVLQCGRSSGPKYGQNLLDIAQTINALGAPFLHQNEDIAEDVEVGDAGIDPPDFGWYVDQAEVSQVLDAWVDLRRNIIKRPFLATSEKFVDTCGADVFVASAFHPSYGEKMIECAETATDFKGCIVVRKGLEGTLGFGLGRNAEVMCGVRKKDGSYERMTYE 582
            ++QLAEPFDG+E   +ITPLLAQ  QK     V++  GRSSGPK   N LDI Q    LG  F+  NE +AE           P++G  +DQA +S  L  WVD RR I+KRPFLAT EK ++ CGA + + S FH +Y EKMI+ A  A  F G IV+++GLEGTL   + + + ++C V + DG++   T++
Sbjct:  174 IIQLAEPFDGVEHSYMITPLLAQAFQK-MGYQVIVSTGRSSGPKLTLNALDIYQ---GLGGNFIQDNESLAETT---------PEYGRILDQAALSPALAQWVDRRRLILKRPFLATLEKVLNPCGAKILITSVFHITYMEKMIDLAAMA-GFSGVIVLKRGLEGTLAPSIAKASGILCAVCQPDGTFITQTFD 353          
The following BLAST results are available for this feature:
BLAST of mRNA_H-paniculata_contig20204.5214.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 vs UniRef90)
Total hits: 25
Match NameE-valueIdentityDescription
D7FMS2_ECTSI1.320e-10874.51Uncharacterized protein n=2 Tax=Ectocarpus TaxID=2... [more]
A0A835YNK2_9STRA1.410e-7156.72Uncharacterized protein n=1 Tax=Tribonema minus Ta... [more]
A0A6T7WU54_9CRYP8.380e-6653.23Hypothetical protein (Fragment) n=1 Tax=Cryptomona... [more]
A0A1G1P5S8_9BACT1.980e-5247.57Uncharacterized protein n=1 Tax=Omnitrophica WOR_2... [more]
A0A1G1NX68_9BACT3.280e-4745.00Uncharacterized protein n=1 Tax=Omnitrophica WOR_2... [more]
A0A3B0W5T9_9ZZZZ9.940e-4745.00Uncharacterized protein n=1 Tax=hydrothermal vent ... [more]
A0A1G1NBX9_9BACT1.880e-4446.84Uncharacterized protein n=1 Tax=Omnitrophica WOR_2... [more]
A0A1G1LML3_9BACT7.320e-4444.83Uncharacterized protein n=1 Tax=Omnitrophica WOR_2... [more]
UPI000E0AB2C11.080e-4245.88anthranilate phosphoribosyltransferase n=1 Tax=Bot... [more]
A0A6C0GGW9_9BACT1.670e-4245.36Anthranilate phosphoribosyltransferase n=1 Tax=Rho... [more]

Pages

back to top
Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
H-paniculata_contig20204contigH-paniculata_contig20204:250..3277 -
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 vs UniRef902022-09-19
OGS1.0 of Halopteris paniculata Hal_grac_a_UBK monoicous2021-02-24
Properties
Property NameValue
Taxonomic scopeBacteria
Seed ortholog score119.0
Seed ortholog evalue2.4e-24
Seed eggNOG ortholog1185876.BN8_05634
Hectar predicted targeting categoryother localisation
EggNOG free text desc.Catalyzes the transfer of the phosphoribosyl group of 5- phosphorylribose-1-pyrophosphate (PRPP) to anthranilate to yield N-(5'-phosphoribosyl)-anthranilate (PRA)
EggNOG OGs47KXD@768503,4NJCN@976,COG0547@1,COG0547@2
COG Functional cat.E
Best tax levelCytophagia
Best eggNOG OGNA|NA|NA
Exons4
Model size615
Cds size585
Stop0
Start1
Relationships

The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_H-paniculata_contig20204.5214.1prot_H-paniculata_contig20204.5214.1Halopteris paniculata Hal_grac_a_UBK monoicouspolypeptideH-paniculata_contig20204 250..3247 -


The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1622929520.8392975-CDS-H-paniculata_contig20204:249..3711622929520.8392975-CDS-H-paniculata_contig20204:249..371Halopteris paniculata Hal_grac_a_UBK monoicousCDSH-paniculata_contig20204 250..371 -
1691480896.8088522-CDS-H-paniculata_contig20204:249..3711691480896.8088522-CDS-H-paniculata_contig20204:249..371Halopteris paniculata Hal_grac_a_UBK monoicousCDSH-paniculata_contig20204 250..371 -
1622929520.8549597-CDS-H-paniculata_contig20204:952..10681622929520.8549597-CDS-H-paniculata_contig20204:952..1068Halopteris paniculata Hal_grac_a_UBK monoicousCDSH-paniculata_contig20204 953..1068 -
1691480896.8212707-CDS-H-paniculata_contig20204:952..10681691480896.8212707-CDS-H-paniculata_contig20204:952..1068Halopteris paniculata Hal_grac_a_UBK monoicousCDSH-paniculata_contig20204 953..1068 -
1622929520.8708417-CDS-H-paniculata_contig20204:2524..26971622929520.8708417-CDS-H-paniculata_contig20204:2524..2697Halopteris paniculata Hal_grac_a_UBK monoicousCDSH-paniculata_contig20204 2525..2697 -
1691480896.8317723-CDS-H-paniculata_contig20204:2524..26971691480896.8317723-CDS-H-paniculata_contig20204:2524..2697Halopteris paniculata Hal_grac_a_UBK monoicousCDSH-paniculata_contig20204 2525..2697 -
1622929520.8832397-CDS-H-paniculata_contig20204:3073..32471622929520.8832397-CDS-H-paniculata_contig20204:3073..3247Halopteris paniculata Hal_grac_a_UBK monoicousCDSH-paniculata_contig20204 3074..3247 -
1691480896.8422072-CDS-H-paniculata_contig20204:3073..32471691480896.8422072-CDS-H-paniculata_contig20204:3073..3247Halopteris paniculata Hal_grac_a_UBK monoicousCDSH-paniculata_contig20204 3074..3247 -


The following UTR feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1622929520.894995-UTR-H-paniculata_contig20204:3247..32771622929520.894995-UTR-H-paniculata_contig20204:3247..3277Halopteris paniculata Hal_grac_a_UBK monoicousUTRH-paniculata_contig20204 3248..3277 -
1691480896.8534882-UTR-H-paniculata_contig20204:3247..32771691480896.8534882-UTR-H-paniculata_contig20204:3247..3277Halopteris paniculata Hal_grac_a_UBK monoicousUTRH-paniculata_contig20204 3248..3277 -


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_H-paniculata_contig20204.5214.1

>prot_H-paniculata_contig20204.5214.1 ID=prot_H-paniculata_contig20204.5214.1|Name=mRNA_H-paniculata_contig20204.5214.1|organism=Halopteris paniculata Hal_grac_a_UBK monoicous|type=polypeptide|length=195bp
MERGELITPLLAQHIQKNFNTVVVLQCGRSSGPKYGQNLLDIAQTINALG
APFLHQNEDIAEDVEVGDAGIDPPDFGWYVDQAEVSQVLDAWVDLRRNII
KRPFLATSEKFVDTCGADVFVASAFHPSYGEKMIECAETATDFKGCIVVR
KGLEGTLGFGLGRNAEVMCGVRKKDGSYERMTYEFGPSDLGWEME
back to top

mRNA from alignment at H-paniculata_contig20204:250..3277-

Legend: UTRpolypeptideCDS
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_H-paniculata_contig20204.5214.1 ID=mRNA_H-paniculata_contig20204.5214.1|Name=mRNA_H-paniculata_contig20204.5214.1|organism=Halopteris paniculata Hal_grac_a_UBK monoicous|type=mRNA|length=3028bp|location=Sequence derived from alignment at H-paniculata_contig20204:250..3277- (Halopteris paniculata Hal_grac_a_UBK monoicous)
CTTTTGCAGTTGGCGGAGCCATTCGATGGCATGGAGCGCGGTGAGTTGAT CACCCCGTTGTTGGCCCAGCACATCCAGAAAAATTTCAACACCGTCGTGG TTTTGCAGTGCGGTCGAAGCTCTGGGCCAAAATATGGACAGAACCTGCTG GACATCGCGCAGACCATTAACGCGCTTGGTGCTCCCTTTCTGCACCAGAA CGAGGTACGCACTGCGCTTTACGCTTTTTCCCGTCCTGCCGACTGTAGTA TCGTGACTCGAGCTGTACCACTTCCTGATCCATTCACTTGTTTCATTGTA TTGCTGTATGTTTGATTGGGTTGCCATGCCAGTGCCACAGTAGGTTTTGA TACTGCCGTGTATTTTGATCGTCGAATCACCCGACGTCGGTTCGCATACC GCAGCACTGAATAGTTTGCGACTAATTGCCGCTAGCCTCTGTGGTGACGA AACAAGGACACAAACCTTCAAATGTAACAGATACGGATTTCCGTATCCTT AGTTACATTTGGCGAGAGTTTTGACACCGTCGTGCGTCCGGTTTTGCCTT GTATTATCTTCCCTGGTGTACCCTTGTCAGGATATCGCTGAAGACGTAGA GGTGGGCGACGCAGGGATCGACCCTCCGGATTTCGGTTGGTACGTGGATC AGGCGGAAGTTAGCCAAGTCCTCGACGCCTGGGTGGACTTGAGGAGGAAT ATTATTAAAAGACCGTTCCTTGCAACATCAGAGAAATTCGTCGATACTTG CGGGTGAGCTTTTGTGGGATTTTGAACAGGGTTGTTCTCGGTAACGGTTT TTGGAAAAAGACAAACAATTGTGGTAATAATTTTCTCGGTATCAGTGTAA AGAATTCGGCTTATCGGTAACATGTACGGTATATTGATTTCGGTATTTGC GCGGTAACCGATATTCGGTTTTTCCTGCCGTGGTATGGTATGGTACCGTA CCGTTCTTCTTATCGCGGTATCGTGCGGTCCGGTATCTAGTATCTGGTAT TTGGTTTCGCGACTCACCAAGCACCGACAGCCCGTTTACCCGATTACCGC ACGTACTTATGATGGAACGTACGTCCCAAAACGTTTGCAGCTTGAAGGTG GAATGCCATGCCAGAATAACTGAATCGCCGCCTTGACGGCGTGTTCAGTC TGTGACGCACGTGTATGAAGCATGATGACGGATGATGATGGATGATGACG GATAATGATGGATAATGACGCATGATCATCGCAAGAAAGAACAACTGGAA CAAATGAACGTGAAGAGCAACTGAAAAACCCCACTCAGGGCAAGATGCAT ATATATTTTTAGTCAACAGCAAGCTTGCTTACTGTCACACGAGGCACCAG TGGTGGCTGCAGGGTCTTCACCACCACCACCACCAGTTTGCGAGGTAGCA GTGGCTGCAGAGCCAGAAAAGTTTGCAGAGTCAGCGGCGTTCGAGCTGAC ATCGCGAACAGATGTCGCCCTCATGGTGCACCCGAGCCACAACATCATTT ACATAGGCATGACTCATGGTGTTGCGGTACATAAATGCATCACTGCGGTC ACTTTTTTGGCGAATTCAATCGTTTCAGACTCGCGATCGCGGCAGCTTTT CCGCTTTTTCACGGCACGATCACCGGTACGGAAACGGGTTTTGAAGGTAC AATCCTGGTACGGCAAAGTGGTTTCACGGTACAGTATACCGAAAAAGAGT CTGATCCCGCGGTAGTCACGTTTTGACGTACCGTGTACGGAAACAGCAAA CGGGAAATTGAGTTTTTCTTGGTAACTGTACCGAATCCTGAATACCGTTA GTTTCTGCGGTATCCTAACTGCGGTATTGTTAAGGAGAACAGCCCTACTA TAGAGTCAGCATATCCATATTGGGTTGAGGATGTTCACTTGATATTTATT TTTTTGGTGCTGGTTTTCAGGCCATAAGGATGGCGGTATGGCTGGCCAAA CTTTTATCAAACTTTGTATTTTCCTTTGGAGCTTTCCGTCTCCAGGGAAA CTGTCGGAATATGACCTTTTCCTTTAGGATGTGTTTATCGACTATGAGAG CGCTTCATCGATGGATTCGTCGGCGACTCGCTTCTCCCATCGACTAAAAT GCAAACTAAAACTCTCTTGGGATGGAGCCCTGCTCCTGGTTATGATGATA GTTTCGTTTCGATCTTGCCCGCTATGTTTTGTCCCATTACACTGGTATTT GCCGATCAGTGCCGACGTGTTCGTGGCTAGTGCCTTTCACCCTTCCTATG GCGAGAAGATGATCGAGTGCGCTGAAACGGCTACGGATTTCAAGGGCTGT ATTGTCGTGCGGAAAGGTCTCGAAGGTACGGAACCACCACTCCGGAACGC TAGGTTTCTCTTTCGTTCGGGCACTAATCGATCTCCACGACGTGAACAGT CGTGTGAGTTCGCTTCACTACAAGTGACGTCACCTGTATTATACTTAATT TAGTATTGAACGAGAAAGGACACACGTTGGACTTTTTCGTTGCGGCCGAC TATCGAAGAACTGCACAGCTAATTGGGGATTCCTGGGTTCGTACACGTTT AAGTTGGCTGCCACGATTGTGCTGCGGGGTTTCTCCTGCGTGTAAATGTG CCAAGCTTGAAGGATTTTTTTTTTTTTGTGAACTGCTTTCAAGTTGGAGC AATGGCGTGGTTCTATTGCGACTACTGGTTTCTCTCGACTTTGCTCCACA TCGCGTGTTGCGTGGTCGTTTGTATTTTTCTGCGGTACGCCAAACGTTAC CAACTTGTGAGATGGTAGTATAGTGTATGCTGTGTTCCGTTGTCTGATGT TACGCTGTGTTGTTATGTGTTACGGTATGTAATGTTATGTTGAGTAACAC TAGTAAGCTAATAGTTCATGTTTCGATCCACCACAACTCAAATCTACCGT TGTCAGGAACATTGGGATTCGGACTTGGGCGCAATGCTGAGGTCATGTGT GGCGTGCGAAAAAAGGATGGAAGCTATGAGCGAATGACTTACGAGTTTGG GCCGAGTGATCTCGGATGGGAGATGGAG
back to top

Coding sequence (CDS) from alignment at H-paniculata_contig20204:250..3277-

>mRNA_H-paniculata_contig20204.5214.1 ID=mRNA_H-paniculata_contig20204.5214.1|Name=mRNA_H-paniculata_contig20204.5214.1|organism=Halopteris paniculata Hal_grac_a_UBK monoicous|type=CDS|length=1170bp|location=Sequence derived from alignment at H-paniculata_contig20204:250..3277- (Halopteris paniculata Hal_grac_a_UBK monoicous)
ATGGAGCGCGGTGAGTTGATCACCCCGTTGTTGGCCCAGCACATCCAGAA
AAATTTCAACACCGTCGTGGTTTTGCAGTGCGGTCGAAGCTCTGGGCCAA
AATATGGACAGAACCTGCTGGACATCGCGCAGACCATTAACGCGCTTGGT
GCTCCCTTTCTGCACCAGAACGAGATGGAGCGCGGTGAGTTGATCACCCC
GTTGTTGGCCCAGCACATCCAGAAAAATTTCAACACCGTCGTGGTTTTGC
AGTGCGGTCGAAGCTCTGGGCCAAAATATGGACAGAACCTGCTGGACATC
GCGCAGACCATTAACGCGCTTGGTGCTCCCTTTCTGCACCAGAACGAGGA
TATCGCTGAAGACGTAGAGGTGGGCGACGCAGGGATCGACCCTCCGGATT
TCGGTTGGTACGTGGATCAGGCGGAAGTTAGCCAAGTCCTCGACGCCTGG
GTGGACTTGAGGAGGAATATTATTAAAAGACCGTTCCTTGCAACATCAGA
GAAATTCGTCGATACTTGCGGGATATCGCTGAAGACGTAGAGGTGGGCGA
CGCAGGGATCGACCCTCCGGATTTCGGTTGGTACGTGGATCAGGCGGAAG
TTAGCCAAGTCCTCGACGCCTGGGTGGACTTGAGGAGGAATATTATTAAA
AGACCGTTCCTTGCAACATCAGAGAAATTCGTCGATACTTGCGGTGCCGA
CGTGTTCGTGGCTAGTGCCTTTCACCCTTCCTATGGCGAGAAGATGATCG
AGTGCGCTGAAACGGCTACGGATTTCAAGGGCTGTATTGTCGTGCGGAAA
GGTCTCGAAGTGCCGACGTGTTCGTGGCTAGTGCCTTTCACCCTTCCTAT
GGCGAGAAGATGATCGAGTGCGCTGAAACGGCTACGGATTTCAAGGGCTG
TATTGTCGTGCGGAAAGGTCTCGAAGGAACATTGGGATTCGGACTTGGGC
GCAATGCTGAGGTCATGTGTGGCGTGCGAAAAAAGGATGGAAGCTATGAG
CGAATGACTTACGAGTTTGGGCCGAGTGATCTCGGATGGGAGATGGAGGA
ACATTGGGATTCGGACTTGGGCGCAATGCTGAGGTCATGTGTGGCGTGCG
AAAAAAGGATGGAAGCTATGAGCGAATGACTTACGAGTTTGGGCCGAGTG
ATCTCGGATGGGAGATGGAG
back to top