mRNA_H-paniculata_contig20124.5184.1 (mRNA) Halopteris paniculata Hal_grac_a_UBK monoicous

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_H-paniculata_contig20124.5184.1
Unique NamemRNA_H-paniculata_contig20124.5184.1
TypemRNA
OrganismHalopteris paniculata Hal_grac_a_UBK monoicous (Halopteris paniculata Hal_grac_a_UBK monoicous)
Homology
BLAST of mRNA_H-paniculata_contig20124.5184.1 vs. uniprot
Match: D7G0I3_ECTSI (Uncharacterized protein n=2 Tax=Ectocarpus TaxID=2879 RepID=D7G0I3_ECTSI)

HSP 1 Score: 93.2 bits (230), Expect = 6.390e-21
Identity = 40/54 (74.07%), Postives = 47/54 (87.04%), Query Frame = 1
Query:   70 AVEYPDYHEIVTNPMDLGTIQEKIQREDYPSLEACAKDVRRIWTNAYLYNPVRA 231
            A EYPDYH+IV+ PMDLGTIQE I++  YPSLEACAKDVR +WTNAYLYNP ++
Sbjct:    2 ASEYPDYHQIVSTPMDLGTIQENIRQNVYPSLEACAKDVRTVWTNAYLYNPAKS 55          
BLAST of mRNA_H-paniculata_contig20124.5184.1 vs. uniprot
Match: A0A0H2RU84_9AGAM (Bromo domain-containing protein n=1 Tax=Schizopora paradoxa TaxID=27342 RepID=A0A0H2RU84_9AGAM)

HSP 1 Score: 68.9 bits (167), Expect = 7.090e-12
Identity = 29/59 (49.15%), Postives = 42/59 (71.19%), Query Frame = 1
Query:   43 AAIFNHPVSAVEYPDYHEIVTNPMDLGTIQEKIQREDYPSLEACAKDVRRIWTNAYLYN 219
            A  F  PVS ++YPDY+EI++NPMDL T+Q+K++ + Y S +  A D+  IW+N Y YN
Sbjct:   64 AEAFLKPVSKIDYPDYYEIISNPMDLQTVQKKVKTKQYKSKKEFADDLDLIWSNCYTYN 122          
BLAST of mRNA_H-paniculata_contig20124.5184.1 vs. uniprot
Match: A0A0M0JNZ0_9EUKA (Bromodomain containing protein n=1 Tax=Chrysochromulina tobinii TaxID=1460289 RepID=A0A0M0JNZ0_9EUKA)

HSP 1 Score: 68.2 bits (165), Expect = 1.050e-11
Identity = 26/59 (44.07%), Postives = 42/59 (71.19%), Query Frame = 1
Query:   43 AAIFNHPVSAVEYPDYHEIVTNPMDLGTIQEKIQREDYPSLEACAKDVRRIWTNAYLYN 219
            A +FN PV   +YP Y+E++++PMDLGTI++K++  +Y  L+A   D+R +W N Y +N
Sbjct:   50 AWLFNKPVDVTKYPQYYEVISHPMDLGTIRKKLEGGEYEDLDAFTSDLRLVWHNCYTFN 108          
BLAST of mRNA_H-paniculata_contig20124.5184.1 vs. uniprot
Match: D2VKM3_NAEGR (Bromodomain-containing protein n=1 Tax=Naegleria gruberi TaxID=5762 RepID=D2VKM3_NAEGR)

HSP 1 Score: 67.8 bits (164), Expect = 1.800e-11
Identity = 29/60 (48.33%), Postives = 41/60 (68.33%), Query Frame = 1
Query:   52 FNHPVSAVEY--PDYHEIVTNPMDLGTIQEKIQREDYPSLEACAKDVRRIWTNAYLYNPV 225
            FN+PV  V+   PDY +++ NPMDLGT+++K+   +Y  +     DVR IW+N YLYNPV
Sbjct:  203 FNNPVDPVQLQIPDYFDVIKNPMDLGTVEKKVNNNEYMDVYQFLDDVRVIWSNCYLYNPV 262          
BLAST of mRNA_H-paniculata_contig20124.5184.1 vs. uniprot
Match: A0A7S2GTN7_9EUKA (Hypothetical protein (Fragment) n=1 Tax=Haptolina brevifila TaxID=156173 RepID=A0A7S2GTN7_9EUKA)

HSP 1 Score: 67.0 bits (162), Expect = 2.100e-11
Identity = 35/73 (47.95%), Postives = 45/73 (61.64%), Query Frame = 1
Query:   16 PLLFFLS--PRAAIFNHPVSA--VEYPDYHEIVTNPMDLGTIQEKIQREDYPSLEACAKDVRRIWTNAYLYNP 222
            PLL  L   P A  F  PV A  ++ PDYH+++T PMDLGTI+ K+++  Y S  A   DVR +W NA  YNP
Sbjct:   52 PLLQLLKQEPNALYFLQPVDAEALKLPDYHQVITRPMDLGTIESKMEQRAYQSPGAFVDDVRLVWENARRYNP 124          
BLAST of mRNA_H-paniculata_contig20124.5184.1 vs. uniprot
Match: A0A8C9XGG1_SANLU (Bromo domain-containing protein n=1 Tax=Sander lucioperca TaxID=283035 RepID=A0A8C9XGG1_SANLU)

HSP 1 Score: 64.7 bits (156), Expect = 2.330e-11
Identity = 29/62 (46.77%), Postives = 42/62 (67.74%), Query Frame = 1
Query:   52 FNHPVSAVEY--PDYHEIVTNPMDLGTIQEKIQREDYPSLEACAKDVRRIWTNAYLYNPVRA 231
            F+ PV AV    PDYH I+T+PMDLGTI+++++   Y S   C +D   ++TN Y+YN VR+
Sbjct:   73 FHQPVDAVSLGLPDYHTIITSPMDLGTIKKRLENNYYWSASECMQDFNTMFTNCYIYNKVRS 134          
BLAST of mRNA_H-paniculata_contig20124.5184.1 vs. uniprot
Match: A0A3P9QF64_POERE (Bromo domain-containing protein n=4 Tax=Poeciliinae TaxID=586240 RepID=A0A3P9QF64_POERE)

HSP 1 Score: 63.9 bits (154), Expect = 3.380e-11
Identity = 29/62 (46.77%), Postives = 42/62 (67.74%), Query Frame = 1
Query:   52 FNHPVSAVEY--PDYHEIVTNPMDLGTIQEKIQREDYPSLEACAKDVRRIWTNAYLYNPVRA 231
            F  PV AV    PDYH+I+T+PMDLGTI+++++   Y S   C +D   ++TN Y+YN VR+
Sbjct:   70 FYQPVDAVSLGLPDYHKIITSPMDLGTIKKRLENNYYWSSSECLQDFNTMFTNCYIYNKVRS 131          
BLAST of mRNA_H-paniculata_contig20124.5184.1 vs. uniprot
Match: A0A3Q1F985_9TELE (Bromo domain-containing protein n=1 Tax=Acanthochromis polyacanthus TaxID=80966 RepID=A0A3Q1F985_9TELE)

HSP 1 Score: 63.5 bits (153), Expect = 4.000e-11
Identity = 28/62 (45.16%), Postives = 42/62 (67.74%), Query Frame = 1
Query:   52 FNHPVSAVEY--PDYHEIVTNPMDLGTIQEKIQREDYPSLEACAKDVRRIWTNAYLYNPVRA 231
            F  PV AV    PDYH+I+T+PMD+GTI+++++   Y S   C +D   ++TN Y+YN VR+
Sbjct:   61 FYQPVDAVSLGLPDYHKIITSPMDMGTIKKRLENSYYWSASECMQDFNTMFTNCYIYNKVRS 122          
BLAST of mRNA_H-paniculata_contig20124.5184.1 vs. uniprot
Match: UPI000C1D490B (transcription factor GTE9-like n=1 Tax=Olea europaea var. sylvestris TaxID=158386 RepID=UPI000C1D490B)

HSP 1 Score: 66.6 bits (161), Expect = 4.500e-11
Identity = 33/64 (51.56%), Postives = 42/64 (65.62%), Query Frame = 1
Query:   37 PRAAIFNHPVSAVEY--PDYHEIVTNPMDLGTIQEKIQREDYPSLEACAKDVRRIWTNAYLYNP 222
            P    FN PV  V+   PDY  IVT PMDLGTI++K++R+ Y + E  A DVR  ++NA LYNP
Sbjct:  124 PHGFAFNQPVDPVKLKIPDYFSIVTKPMDLGTIKQKLERDTYFNAEEFASDVRLTFSNAMLYNP 187          
BLAST of mRNA_H-paniculata_contig20124.5184.1 vs. uniprot
Match: A0A834LWX1_RHOSS (Uncharacterized protein n=2 Tax=Rhododendron TaxID=4346 RepID=A0A834LWX1_RHOSS)

HSP 1 Score: 66.6 bits (161), Expect = 4.570e-11
Identity = 30/66 (45.45%), Postives = 45/66 (68.18%), Query Frame = 1
Query:   31 LSPRAAIFNHPVSAVEY--PDYHEIVTNPMDLGTIQEKIQREDYPSLEACAKDVRRIWTNAYLYNP 222
            + P   +FNHPV  V+   PDYH I+++PMDLGTI+ K+++  Y ++E  A DV   ++NA +YNP
Sbjct:  132 MHPAGWVFNHPVDPVKLNIPDYHSIISDPMDLGTIKTKLEKNTYSNVEDFAADVWLTFSNAMVYNP 197          
The following BLAST results are available for this feature:
BLAST of mRNA_H-paniculata_contig20124.5184.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 vs UniRef90)
Total hits: 25
Match NameE-valueIdentityDescription
D7G0I3_ECTSI6.390e-2174.07Uncharacterized protein n=2 Tax=Ectocarpus TaxID=2... [more]
A0A0H2RU84_9AGAM7.090e-1249.15Bromo domain-containing protein n=1 Tax=Schizopora... [more]
A0A0M0JNZ0_9EUKA1.050e-1144.07Bromodomain containing protein n=1 Tax=Chrysochrom... [more]
D2VKM3_NAEGR1.800e-1148.33Bromodomain-containing protein n=1 Tax=Naegleria g... [more]
A0A7S2GTN7_9EUKA2.100e-1147.95Hypothetical protein (Fragment) n=1 Tax=Haptolina ... [more]
A0A8C9XGG1_SANLU2.330e-1146.77Bromo domain-containing protein n=1 Tax=Sander luc... [more]
A0A3P9QF64_POERE3.380e-1146.77Bromo domain-containing protein n=4 Tax=Poeciliina... [more]
A0A3Q1F985_9TELE4.000e-1145.16Bromo domain-containing protein n=1 Tax=Acanthochr... [more]
UPI000C1D490B4.500e-1151.56transcription factor GTE9-like n=1 Tax=Olea europa... [more]
A0A834LWX1_RHOSS4.570e-1145.45Uncharacterized protein n=2 Tax=Rhododendron TaxID... [more]

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Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
H-paniculata_contig20124contigH-paniculata_contig20124:753..4657 +
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 vs UniRef902022-09-19
OGS1.0 of Halopteris paniculata Hal_grac_a_UBK monoicous2021-02-24
Properties
Property NameValue
Taxonomic scopeEukaryota
Seed ortholog score93.6
Seed ortholog evalue4.3e-17
Seed eggNOG ortholog2880.D7G0I3
Hectar predicted targeting categorysignal peptide
EggNOG free text desc.acetylation-dependent protein binding
EggNOG OGsCOG5076@1,KOG1474@2759
Ec32 ortholog descriptionBromodomain and extraterminal protein
Ec32 orthologEc-20_002430.1
COG Functional cat.BK
Best tax levelEukaryota
Best eggNOG OGNA|NA|NA
Exons2
Model size231
Cds size231
Stop0
Start0
Relationships

The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1622929517.3634012-CDS-H-paniculata_contig20124:752..8841622929517.3634012-CDS-H-paniculata_contig20124:752..884Halopteris paniculata Hal_grac_a_UBK monoicousCDSH-paniculata_contig20124 753..884 +
1691480895.3843563-CDS-H-paniculata_contig20124:752..8841691480895.3843563-CDS-H-paniculata_contig20124:752..884Halopteris paniculata Hal_grac_a_UBK monoicousCDSH-paniculata_contig20124 753..884 +
1622929517.3790708-CDS-H-paniculata_contig20124:4558..46571622929517.3790708-CDS-H-paniculata_contig20124:4558..4657Halopteris paniculata Hal_grac_a_UBK monoicousCDSH-paniculata_contig20124 4559..4657 +
1691480895.3942254-CDS-H-paniculata_contig20124:4558..46571691480895.3942254-CDS-H-paniculata_contig20124:4558..4657Halopteris paniculata Hal_grac_a_UBK monoicousCDSH-paniculata_contig20124 4559..4657 +


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_H-paniculata_contig20124.5184.1prot_H-paniculata_contig20124.5184.1Halopteris paniculata Hal_grac_a_UBK monoicouspolypeptideH-paniculata_contig20124 753..4657 +


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_H-paniculata_contig20124.5184.1

>prot_H-paniculata_contig20124.5184.1 ID=prot_H-paniculata_contig20124.5184.1|Name=mRNA_H-paniculata_contig20124.5184.1|organism=Halopteris paniculata Hal_grac_a_UBK monoicous|type=polypeptide|length=77bp
LRFFSPLLFFLSPRAAIFNHPVSAVEYPDYHEIVTNPMDLGTIQEKIQRE
DYPSLEACAKDVRRIWTNAYLYNPVRA
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mRNA from alignment at H-paniculata_contig20124:753..4657+

Legend: CDSpolypeptide
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_H-paniculata_contig20124.5184.1 ID=mRNA_H-paniculata_contig20124.5184.1|Name=mRNA_H-paniculata_contig20124.5184.1|organism=Halopteris paniculata Hal_grac_a_UBK monoicous|type=mRNA|length=3905bp|location=Sequence derived from alignment at H-paniculata_contig20124:753..4657+ (Halopteris paniculata Hal_grac_a_UBK monoicous)
CTTCGTTTTTTTTCTCCATTATTATTTTTTTTATCTCCTCGAGCAGCCAT ATTTAACCACCCGGTCAGTGCCGTGGAGTACCCGGACTATCACGAGATCG TCACTAACCCCATGGACCTCGGCACAATACAGGTGCAGTAATAATGCCTT AGGAAGAACCAAAGGGAAATATCGTAAAGACGAAAATTACCTTGTTCGTG ACGAAATGTATTGCAATCATTTGCTCTAAATAAATATATGACATAACCAG TAGTAGAGTGCACTGAACAGTCCCCCGTGGAGTGGATTGGTGGGGAAATC AGCCGCGGTTTCCACGGAGGGATTACATTTTGTTGCAATTGGAGTAGGCT CGTTGTGTTCATCAATGCTGGGTACGGTATAATACAACCAAAGAGAGAGA GAGAGAGAGAGGAAAAGAGCAGTGCACGGCAAGCACTGTAATATGCGTGG ATACCGCACAGGGGTGCAAACGGTTTTCAAATGCGACTTTATATCCTGAG AACGAAGACCCTCATGCGGTCGAAAGAGCATGCCAATCGACAGATCTCCG CAAAGAGAATTCCCGGCTACACTACTTTTGTTGTTAGTAAATAGTGCCGA ATAAATAGTAGTGGCCGAGATAATCACGCCGGAAACATTTTCACCATATA TTTACGGTATTATATTTGACCCTGCTGTACACGTGAGTTTTCTGCCCTAT CAGCGACAGCACTGGAAATGTACACGGTCGTGATACGCGATCGTAAGGGT TGCAGTTGCCTGAGCTAACGATGGCACGTCGCCGAGAAGTCAGTAAACAC GGGCAAATGCTGGATAATGGCAATAGAGACGATTGTAAAGGCGAGGGGGT AATTTTTTGTCTTGTCTGAGAAGACCATTGGTTGATTCGTCGACGTTTTG CCCCCCGCCGAAAGAGCGACTGTGGTTGTGTTGTTGTGTCGTGTGTACGG TAGGATTGGATCTGTTGGTGCGGCGGCAGGGTGTGGATCTCGCTTTGATT ACTTTGTAGGGGGGAAACAGAAAGAAGACGTATCGTCCATTTGTTTGCTC TCGTAAGATTTTGTATGTCACATTTTCTCGTATTTGTTTGTGTATGGTGA GCAAATGACCGTCAACTACGTTGGGGTTTTTTGCGTTCGCCGCATCTTGC TTCTGTTGGTCATGCCTTCAACACTGAGAGCCGGCCACTCTTCGCTCAGA CAGAGGAGAGGAAGGATAAAGAGAGAGAGAGAGAAACTGAAGGAGATACA TAAGGAAGAGTAGGAGATGGGGATGAGAGATTTATCAGACGATCCTGCCC AAAGCTAGCTCCTTGTTTATGTGGGTCCGGGTTCGCTATGCCCTTTCCAC TCAATTGACATGGAGAGGAGACAGTTAGGGGTGCGCCCGAGTCCTCTATA GTGCGGTAATTGTGTCGCAAAGACCACGTAATTTTTCGCAACGACCACGT ATTTATTGCCGGCTTTTTAGAGGGTTTGGGCCAAATAAGAAAATACATAC AATTGACATCACTCCCGCCCCCCCAAAACCACACACACAAATATCGAGAG GACGTCACCTGATAATAGTAGTAATAGTAATAATGAACACCGAGAGACCC ATCGTAAGCTAAAGAAACAAAAAACATGAATTGTCCTGAAAGAGGCAGGA TATCCCAAAAATACGAAAAGAAGAACAACCCCGAAGAAGCCAACAGAAAG ACTGAGGAGCTACAGACAGAACAGAGAGACTCCTCCACAGGCGAGAGCTG CCTCTCACTGCCTCCCTTTGAGAGCAACAGTTGCAGCATCTGCGCACACA GCACGCACGGCATCCCACACCAGCCCGAGTAGACCGCATCCAATGGCCGG ACGGCACTGGGGAAATGGCCGAGCACAAGCAAGAGCAGCCGCTCCCGACC GCTGCTACGGCATTCCACCATATACGCAACACGCATTGGTTGTCTCCTGC ATGTCCTCCACATCGCCGTGACGTCAGGGATGGAGAGTGAGTGCTTCATG GGCACCCTTGACACGGGATCGTGGCATGAGTGGCCGCATCAACATCTTGT ACCGTTGTTCGGTTCTGTCTGGTACAACAGCAGCAGAATTAATCTTGACT ACGGAAAGAACGGGTTAATGAAAACAGACAGCAGGAGCGGCGGCGGTGTC GAAATCAAGCAACAGCACTAGCACCAGCTGCTGACGTCAGGGATGGAGAG TGAGTGCTTTATGGGCACCCTTGACACGGGATCGTGGCATGAGTGGCCGC ATCAACATCTTGTACCGTTGTTCGGTTCTGTCTGGTACAACAGCAGCAGA ATTAATCTTGACTACGGAAAGAACGGGTTAATGAAAACAGACAGCAGGAG CGGCGGCGGTGTCGAAATCAAGCAACAGCACTAGCACCAGCTGCTGCCGC TGTTGCTGCAGCGGCGGAGTCATAATAACGCATTCGCAAAAGGCAAATGC AACAGGCAAAAATATGTCGAACGAGTCAACTTGAAAAGACATGTCAAGTG TACAAACTACACAAAAAGCATCTGCGTGCTTTTAGCGCATACAGCAGTCT GCTGCTGCTGCTGCGGCGGCGGCGGCGGCGGCGGCGGCGGCGGCAGCGGC GTAAAAATAACGAATTCGCTAAATGCACAGGGAAAAAATTAAGCACGGGA GTAATAAATTTCGTTATAGAATGTCGCCAAAAGCAACTGAGGGAAACGAC TCCTGCTGCTTCTTTCTGTTCATCACCGTGGCGTGCAATTTCTCGATGGC ATGGAGCTCCCTCTGCCCCTGCTTGATCCTCATCTTCTGGCGGATGACCT GCTATTCTAGAGGCAGTGCGAGCTTTCGTGCACGCCGAGCCACAATCTGC TCATCTTCCTCCGCGAGCTGGCAGAACTCGTTGATCATCTCGGCTTTTGT TTTTGTTCAACTTACGCATACTGAGCTCCTCAGTAACGTCGCGGATTGGA GGGTGGTTTTGGACAGGATGCGCAAAGAAGCAGAGCTACTGCCGCTGTGT TAACCATCTTGCCGTTTATCATGTACTGCTGCAGCTCACAGCGAGACGGA AAAAAAGCCAAGCAAAGCTAAGTTTCGAGTGCTTTGGGACCCTGAGAATG CTGGTTACAACAACGCGCTACAACGATTGCAATATGCAACGCGAATTATG CCCCTACGATCACCCGATCGTTCCCTAATGACCAGATGTGTGGAGAATAT TTACGTTTGAAAGGATGCCCTCTCCTGCACTCTAAATTCGAGCAATTTTG GGCTCTTTTTTGGTGTTGATGGGCCACTTTAAATTCGAGAAAATTTTGTT TTGATGAGCAATCTTGTGAGTCAAAATTCTCCTCAGCAAGGTCGTCGATT GGGGTCCGGTTTTTTGCATCGTGCGCGCGAAAACCACAGTTAGGGGTTCA GCTTTATGTATTTTTGAAGTCATGGGGAAAAAAACCATGTTCACAGAAAA AGTAGCAGAAAAAAGCACTATTTATTGGGGTGTTTGGAATTCTCATAATG CGGATTAAAATTGCAACAAGATCAAGCCCTAGATTAGGCACATATCCATG TGTGTGTTGAGTCTCACGAGCCAGTTCTCAACCTGTATCGAGTAATTCAG GTTACAAGTGCGTGGAAACCCGACACTGAATACAAGTACTTTGCGGGATG TAGGTGGCGTTATCTGTCAGGGAATACACACTTTTTTTCTCCGTTTGGTG CTTTATTGTGTGGTCGTTGTCAGCAAGAATCAGCCTCAAATCGGACTTAG GCGCACCCCTAACAGTTATAAGTTGGTCATGTCATGGTACTCGCTGCTTC ACCCAGGAAAAAATCCAGCGCGAGGACTACCCCTCCCTGGAGGCGTGTGC GAAAGACGTACGACGGATATGGACAAATGCCTACTTGTACAATCCGGTGA GGGCG
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Coding sequence (CDS) from alignment at H-paniculata_contig20124:753..4657+

>mRNA_H-paniculata_contig20124.5184.1 ID=mRNA_H-paniculata_contig20124.5184.1|Name=mRNA_H-paniculata_contig20124.5184.1|organism=Halopteris paniculata Hal_grac_a_UBK monoicous|type=CDS|length=462bp|location=Sequence derived from alignment at H-paniculata_contig20124:753..4657+ (Halopteris paniculata Hal_grac_a_UBK monoicous)
CTTCGTTTTTTTTCTCCATTATTATTTTTTTTATCTCCTCGAGCAGCCAT
ATTTAACCACCCGGTCAGTGCCGTGGAGTACCCGGACTATCACGAGATCG
TCACTAACCCCATGGACCTCGGCACAATACAGCTTCGTTTTTTTTCTCCA
TTATTATTTTTTTTATCTCCTCGAGCAGCCATATTTAACCACCCGGTCAG
TGCCGTGGAGTACCCGGACTATCACGAGATCGTCACTAACCCCATGGACC
TCGGCACAATACAGGAAAAAATCCAGCGCGAGGACTACCCCTCCCTGGAG
GCGTGTGCGAAAGACGTACGACGGATATGGACAAATGCCTACTTGTACAA
TCCGGTGAGGGCGGAAAAAATCCAGCGCGAGGACTACCCCTCCCTGGAGG
CGTGTGCGAAAGACGTACGACGGATATGGACAAATGCCTACTTGTACAAT
CCGGTGAGGGCG
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