mRNA_H-paniculata_contig20088.5170.1 (mRNA) Halopteris paniculata Hal_grac_a_UBK monoicous
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Overview
Homology
BLAST of mRNA_H-paniculata_contig20088.5170.1 vs. uniprot
Match: D7FWQ3_ECTSI (Uncharacterized protein n=1 Tax=Ectocarpus siliculosus TaxID=2880 RepID=D7FWQ3_ECTSI) HSP 1 Score: 281 bits (720), Expect = 6.290e-85 Identity = 143/309 (46.28%), Postives = 197/309 (63.75%), Query Frame = 3
Query: 237 RCWIFSHLQKCGGSTVKEMIVHRWGEDFQIFDNNHWKRGDAFSARYSEILLSGKRWHVSGGGYTEGLRRH--VGDRCTWFTMFRHPVPRLVSAYFYCKGVPTDAACASERVDAKDVDLLTFAKHWGNFALRQFVLSRIDVD---DFINDSLAQGFHQRSDGLLQDSGWYMLKKYLKR------GIYGSEEEVLPDR--------ALYDMLRPVLELIENNYTAVGLLENFHESLELFNRALGMPALDWHESFSQYSIMKQEKEFAAQEKKVLASAWTNAEIKQYIALDLVLYDHAVAVFNKQKKKYGIL 1106
+CW+F HLQKCGGSTVK M+ +G + I+D+N WK GD SA + L G+ W+V GGYTE LRR V C +FT+FRHP+ R+VSAYFYC+ DAACASE VDAKDVDLLTFAKHWGNFA+RQF L + D ++I AQ H L + +GWY LK YL+R G+ G E + + LYD+L+P ++LI + Y AVG+LE ++ +L LF+ AL +P + W F++ + + + E + L AWT++E+K+Y+ LDL+LY+HAV VF++Q + YG+L
Sbjct: 155 QCWVFMHLQKCGGSTVKYMLRRSYGSRYSIYDSNQWKLGDDISANFGVKLARGETWNVMAGGYTEALRRSEPVDAGCRFFTLFRHPIARMVSAYFYCRSTLGDAACASEVVDAKDVDLLTFAKHWGNFAVRQFALGFVPSDGVQEYIRTPEAQALHDFD--LKKIAGWYQLKMYLERPEKGDWGVPGQSEAMTVEHDAAATLEAPLYDLLQPAMDLIRSGYVAVGILEQWNTTLHLFDHALEIPGMYWGAQFAEGGKQRVDYKNKRLESETLKQAWTDSELKKYMRLDLLLYEHAVDVFHEQARGYGLL 461
BLAST of mRNA_H-paniculata_contig20088.5170.1 vs. uniprot
Match: D7G716_ECTSI (Uncharacterized protein n=2 Tax=Ectocarpus TaxID=2879 RepID=D7G716_ECTSI) HSP 1 Score: 275 bits (703), Expect = 2.040e-82 Identity = 139/306 (45.42%), Postives = 192/306 (62.75%), Query Frame = 3
Query: 237 RCWIFSHLQKCGGSTVKEMIVHRWGEDFQIFDNNHWKRGDAFSARYSEILLSGKRWHVSGGGYTEGLR--RHVGDRCTWFTMFRHPVPRLVSAYFYCKGVPTDAACASERVDAKDVDLLTFAKHWGNFALRQFVLSRIDVDDFINDSLAQGFHQRSDGLLQDSGWYMLKKYLKR------GIYGSEEEVL--------PDRALYDMLRPVLELIENNYTAVGLLENFHESLELFNRALGMPALDWHESFSQYSIMKQEKEFAAQEKKVLASAWTNAEIKQYIALDLVLYDHAVAVFNKQKKKYGIL 1106
+CW+F HLQKCGGSTVK+++ RWG F I+D+ WK GD FSA++ L G +W+V GGYTE LR VG C +FT+FRHP+ R+VSAYFYC+ V D ACASE + AKDVDLLTFAKHWGNFALRQF L + DD +Q+ Y LK YL+R G+ G E + PD LY++L+P ++L+ + Y AVG+LE ++ +L LF+ L MP ++W E F++ + E + L AWT++E+K+Y+ LDL+LY+HAV VF++Q + +G+L
Sbjct: 176 QCWVFMHLQKCGGSTVKDLLEDRWGSRFFIYDSMRWKFGDEFSAKFGAKLALGDKWNVMTGGYTEALRLSEPVGAGCRFFTLFRHPIARMVSAYFYCRSVSGDVACASEVMQAKDVDLLTFAKHWGNFALRQFALGFVPSDD-----------------VQE---YQLKMYLERPQKEDGGVLGQREAMTAHQDAAATPDAPLYELLQPAMDLVRDGYVAVGILEQWNTTLRLFDHTLDMPVMNWEEQFAESGKHHVDIVNKQLEIETLQQAWTDSELKKYMRLDLLLYEHAVDVFHQQARSHGLL 461
BLAST of mRNA_H-paniculata_contig20088.5170.1 vs. uniprot
Match: D7G715_ECTSI (Uncharacterized protein n=1 Tax=Ectocarpus siliculosus TaxID=2880 RepID=D7G715_ECTSI) HSP 1 Score: 247 bits (631), Expect = 1.390e-72 Identity = 126/304 (41.45%), Postives = 182/304 (59.87%), Query Frame = 3
Query: 231 DTRCWIFSHLQKCGGSTVKEMIVHRWGEDFQIFDNNHWKRGDAFSARYSEILLSGKRWHVSGGGYTEGLRRHVGDR-------CTWFTMFRHPVPRLVSAYFYCKGVPTDAACASERVDAKDVDLLTFAKHWGNFALRQFVLSRIDVD---DFI---NDSLAQGFHQRSDGLLQDSGWYMLKKYLKRGIYGSEEEVLPDRALYDMLRPVLELIENNYTAVGLLENFHESLELFNRALGMPALDWHESFSQYSIMKQEKEFAAQEKKVLASAWTNAEIKQYIALDLVLYDHAVAVFNKQKKKYGI 1103
+ RCWIF+HLQK GG+TVK ++ WG + +D+ WK+G ++ + L S W + GGY E LRR + C WFT+FRHPV RLVSAY+YC+ P+D CASE V +++VDL+TFA+HWGNFALRQF L + D DF+ N A G L+ GWYMLK +L +++ L M RPV++L+ +NY VG+LE+++ +L LF+ AL MP + W E F + + + F +++ VL A ++ EI ++++LDL LY AV +FN+Q+ YGI
Sbjct: 85 ENRCWIFNHLQKAGGTTVKRLLFDSWGSESTTYDSYQWKKGQGYAESVAASLASPAGWSAAAGGYLEALRRTPAFQPDDERTPCRWFTVFRHPVSRLVSAYYYCREDPSDQLCASEFVSSRNVDLVTFARHWGNFALRQFALGFVSHDKVKDFLVSPNGGGAMGLTAEQVELMP--GWYMLKLFLNDRSGVADDTSPEGTRLEYMFRPVVDLLRDNYAVVGILEDWNATLSLFDSALDMPGMTWREEFERSGKLNVDTRFKGEKQDVLQQALSDPEIVKHLSLDLRLYGQAVDIFNQQRHSYGI 386
BLAST of mRNA_H-paniculata_contig20088.5170.1 vs. uniprot
Match: D7FS84_ECTSI (Uncharacterized protein n=2 Tax=Ectocarpus TaxID=2879 RepID=D7FS84_ECTSI) HSP 1 Score: 207 bits (527), Expect = 1.560e-58 Identity = 121/306 (39.54%), Postives = 167/306 (54.58%), Query Frame = 3
Query: 258 LQKCGGSTVKEMIVHRWGEDFQI----FDNNHWKRGDAFSARYSEILLSGKRWHVSGGGYTEGLRRHVG---DRCTWFTMFRHPVPRLVSAYFYCKGVPTDAACASERVDAK--DVDLLTFAKHWGNFALRQFVLSRIDVDDFINDSL---AQGFHQRSDGLLQDSGWYMLKKYLK------------RGIYGSEEEVLPDRALYDMLRPVLELIENNYTAVGLLENFHESLELFNRALGMPALDWHESFSQYSIMKQEKEFAAQEKKVLASAWTNAEIKQYIALDLVLYDHAVAVFNKQKKKYGI 1103
+ K GGSTVK M+ W + + +D+ W G F+ + G + G YTEGLR G C WFT+FRHP+PRLVSAYFYCK P D CA+ +DA D DL FA+HWG+F LRQF L+ + ++ + + + A G G GWY LK YL+ RG GS + +L+PV EL+ N Y AVG+LE + SL LFN ALGMP DW E+F + F +E ++L +WT+ +++Y++LDL+LYD+AV+V N+Q KYG+
Sbjct: 1 MNKAGGSTVKYMLAP-WTKAQNVTVGLYDSPQWLEGKDFAQDFL-----GDENSLMWGAYTEGLRPFGGLGLRECKWFTIFRHPIPRLVSAYFYCKKKPQDGLCATVALDANADDTDLYAFAEHWGDFGLRQFALAFVLPEELLANKVKYDATGICTPYHGKRSCPGWYELKLYLQQQLDEQEQGEGSRGWDGSGAAASGAATISHLLQPVQELLTNEYAAVGVLEQWETSLLLFNEALGMPGFDWPETFGSIGKKNSDGTFHNEEAEMLLRSWTDPRLRRYLSLDLLLYDYAVSVHNQQVDKYGL 300
BLAST of mRNA_H-paniculata_contig20088.5170.1 vs. uniprot
Match: A0A6H5JY77_9PHAE (Uncharacterized protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5JY77_9PHAE) HSP 1 Score: 205 bits (522), Expect = 2.460e-57 Identity = 118/300 (39.33%), Postives = 165/300 (55.00%), Query Frame = 3
Query: 240 CWIFSHLQKCGGSTVKEMIVH---RWGEDFQIFDNNHWKRGDAFSARYSEILLSGKRWHVSGGGYTEGLRRHVGDRCTWFTMFRHPVPRLVSAYFYCKGVPTDAACASERVDAKDVDLLTFAKHWGNFALRQFVLSRIDVDDFINDSLAQGFHQ--RSDGLLQDSGWYMLKKYL----KRGIYGSEEEVLPDRALYDMLRPVLELIENNYTAVGLLENFHESLELFNRALGMPALDWHESFSQYSIMKQE--KEFAAQEKKVLASAWTNAEIKQYIALDLVLYDHAVAVFNKQKKKYGIL 1106
CW+FSH+ K GG TV++MI+ G +FD+ W G + Y+E + + + GGYTEGLR + C WFT+FRHPV R+VSAYFYC+ D CA+ +DA VDLLTFA+HWGN+ LRQF L+ I +D ++ + F Q R G + WY K YL + G + P+ L L E + Y AVG++E + S+ELFNR L + DW + F Q S K +F K L +AW + E+K++I LD++LYDHA++V Q GI+
Sbjct: 52 CWVFSHMNKSGGMTVRKMIMPFLTEKGVSTALFDDIEWSSGRS----YAETFVK-ENAVFTYGGYTEGLRMYDDRDCKWFTVFRHPVSRVVSAYFYCQRAHHDQLCAAVVLDASKVDLLTFAEHWGNYGLRQFALASIKAEDVFHNEVVSEFCQQARGHGDVCIPAWYRQKHYLHLPHQDDFCGPTQ---PESGLAQFLSSAQETLSTRYAAVGIIEEWDNSMELFNRVLNLRRFDWVKEF-QKSGKKNSGGSQFETASKSALKAAWHSPELKKFIWLDILLYDHALSVHRSQVADLGIV 342
BLAST of mRNA_H-paniculata_contig20088.5170.1 vs. uniprot
Match: A0A6H5JNJ0_9PHAE (Uncharacterized protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5JNJ0_9PHAE) HSP 1 Score: 174 bits (440), Expect = 9.220e-46 Identity = 101/301 (33.55%), Postives = 162/301 (53.82%), Query Frame = 3
Query: 240 CWIFSHLQKCGGSTVKEMI---VHRWGEDFQIFDNNHWKRGDAFSARYSEILLSGKRWHVSGGGYTEGLRRHVGDRCTWFTMFRHPVPRLVSAYFYCKGVPTDAACASERVDAKDVDLLTFAKHWGNFALRQFVLSRIDVDDFINDSLAQGFHQRSDGLLQDSGWYMLKKYLKRGI-YGSEEEVLPDRALYD---------MLRPVLELIENNYTAVGLLENFHESLELFNRALGMPALDWHESFSQYSIMKQEKEFAAQEKKVLASAWTNAEIKQYIALDLVLYDHAVAVFNKQKKKYGI 1103
CW+F+H K GG+TVK + E + ++ + RGD + + LL+ K ++GG Y EGLR C WFTM RHP+ RL+SA++YC G D CA+ +D D+ FAKHWGN+AL QF L +D + F + D W+ K Y + + Y +R +D +L+PV EL+ +NY AVG+LE++ S+ LF+ AL +P +W + + S K + + ++K +LA+A T+ ++QY+ LDL+LY++A ++ +Q ++Y +
Sbjct: 37 CWVFTHNNKAGGTTVKTHLRNYAESRNETVALCHSDWYARGD----KGIQDLLNDKPVLIAGG-YAEGLRTSAFQGCKWFTMMRHPIARLISAFYYCSGGNRDQLCAANIHKPEDGDIYDFAKHWGNYALLQFALGVVDQHEI--------FAEEVDA----PAWFKAKLYFEGRLGYPGNMSTATNRTTHDEWQSVWIPDILQPVEELLRSNYAAVGILEHWQRSMMLFDHALEIPGFNWTVASASLSPRKSQNKIV-EKKAMLAAAMTDPVLRQYVWLDLLLYEYACSLHEEQLRRYDL 319
BLAST of mRNA_H-paniculata_contig20088.5170.1 vs. uniprot
Match: A0A6H5L061_9PHAE (Uncharacterized protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5L061_9PHAE) HSP 1 Score: 152 bits (383), Expect = 9.660e-39 Identity = 83/217 (38.25%), Postives = 124/217 (57.14%), Query Frame = 3
Query: 477 FRHPVPRLVSAYFYCKGVPTDAACASERVDAKDVDLLTFAKHWGNFALRQFVLSRIDVDDFINDSLAQGFHQRSDGLLQDSGWYMLKKYLKRGIYGSEEEVLP-------DRALYDMLRPVLELIENNYTAVGLLENFHESLELFNRALGMPALDWHESFSQYSIMKQEKEFAAQEKKVLASAWTNAEIKQYIALDLVLYDHAVAVFNKQKKKYGIL 1106
++ P+PRLVSAYFYCK D CAS + A + DL TFAKHWGN+ LRQF L+ + +D +G R + GWY +K+Y + +E L D A+ +L+PV +L+ NY+AVG+LE + S+ LFN+AL +P+ +W + +K +E L +AW + + + + LD+ LYDHAVAV NKQ +++GI+
Sbjct: 18 YKCPIPRLVSAYFYCKQNGWDELCASMVLKAGNTDLHTFAKHWGNYGLRQFSLAFVGAEDVFAAEQERGIDGRP---VMFPGWYRVKEYFENQFDVEQERALMQETGASNDLAMSYLLQPVEDLLSRNYSAVGILEKWETSMTLFNKALKVPSFNWQTASRNLGRKNVDKRLHDEEAHALRAAWDDPVLAKTLWLDIFLYDHAVAVHNKQVEEHGIV 231
BLAST of mRNA_H-paniculata_contig20088.5170.1 vs. uniprot
Match: A0A6H5JQY7_9PHAE (Uncharacterized protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5JQY7_9PHAE) HSP 1 Score: 149 bits (376), Expect = 9.480e-37 Identity = 98/302 (32.45%), Postives = 157/302 (51.99%), Query Frame = 3
Query: 240 CWIFSHLQKCGGSTVKEMI---VHRWGEDFQIFDNNHWKRGDAFSARYSEILLSGKRWHVSGGGYTEGLRRHVGDR-CTWFTMFRHPVPRLVSAYFYCKGVPTDAACASERVDAKDVDLLTFAKHWGNFALRQFVLSRIDVDDFINDSLAQGFHQRSDGLLQDSGWYMLKKYL--KRGIYG--------SEEEVLPDRALYDMLRPVLELIENNYTAVGLLENFHESLELFNRALGMPALDWHESFSQYSIMKQEKEFAAQEKKVLASAWTNAEIKQYIALDLVLYDHAVAVFNKQKKKYGI 1103
CW+++ + K GG++++ MI F + + GD R + +L +R + G YTEGLR + C WFTM RHP+ RLVSA+ YC VP+D CA+ +D D+ FA+HWGN + QF L+ D++D + + + WY K Y + G G S ++V + + ++L+PV EL+ + Y AVG+LE + S+ LF+ AL +P +W S S S + + A+ ++AS T+ +KQ + LD++LY+HA +V Q +YG+
Sbjct: 37 CWVYTDMNKAGGTSIRRMIKDYAAATNTTVGEFTHTQYNAGD----RGVQQILD-RRPSLIWGAYTEGLRPYATVLGCKWFTMVRHPIARLVSAFNYCGIVPSDQLCATRIHKPEDGDIYDFAEHWGNHGVVQFALAFEDLNDILVTEV------------KSPPWYKAKLYFEGRLGPSGKTSTSANISTKDVCQNVWMPEILQPVEELLRSKYAAVGILEQWETSMMLFDHALQLPGFNWT-STSASSTPRNVHDSKAKNDLLVASM-TDPVLKQILWLDILLYEHACSVHKAQLSRYGL 319
BLAST of mRNA_H-paniculata_contig20088.5170.1 vs. uniprot
Match: A0A6H5JT32_9PHAE (Uncharacterized protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5JT32_9PHAE) HSP 1 Score: 89.7 bits (221), Expect = 1.490e-15 Identity = 83/300 (27.67%), Postives = 124/300 (41.33%), Query Frame = 3
Query: 240 CWIFSHLQKCGGSTVKEMIVHRWGEDFQIFDNNHWKRGDAFSAR---YSEILLSGKRWHVSGGGYTEGLR---RHVGDRCTWFTMFRHPVPRLVSAYFYCKGV-------PTDAACASERVDAKDVDLLTFAKH-WGNFALRQFVLSRIDVDDFINDSLAQGFHQRSDGLLQDSGWYMLKKYLKRGIYGSEEEVLPDRALYDMLRPVLELIENNYTAVGLLENFHESLELFNRALGMPALDW----HESFSQYSIMKQEKEFAAQEKKVLASAWTNAEIKQYIALDLVLYDHAVAVFNKQ 1085
C +F+H+ K GGST+K+ + I G A Y + L GY E LR +G C +FT+ RHP+ RL+SA+FYC P A++ D L+ FAK+ W N A RQ + + G Q + + GW +L++ +E I YTAVG+LE + S++LFN + P DW H + Q S ++ E V A + EI + +A D++LYD++V+VF Q
Sbjct: 128 CTLFNHMVKSGGSTIKDKL--------DIAAKADGVDGPAMCVNGVGYEDSCLKAMHSAPVIVGYAELLRYPLEVIGRECEYFTVMRHPIDRLLSAFFYCPAYGDVQDRPPKWCGYANDPQPVTD-RLVEFAKYGWKNKAFRQMTFGLYCPPNAFCEQAEPGAQQ---AVHEPGGWILLEQ--------------------------IEAILATYTAVGILEYWDLSMQLFNARVTSPVWDWEDMEHSNRGQRSGLRDE---------VHRWAHMSPEIHRVMATDMLLYDYSVSVFKLQ 380
BLAST of mRNA_H-paniculata_contig20088.5170.1 vs. uniprot
Match: UPI001BB22A8D (uncharacterized protein LOC121411570 n=1 Tax=Lytechinus variegatus TaxID=7654 RepID=UPI001BB22A8D) HSP 1 Score: 88.2 bits (217), Expect = 4.870e-15 Identity = 85/302 (28.15%), Postives = 138/302 (45.70%), Query Frame = 3
Query: 246 IFSHLQKCGGSTVKEMIVHRWGED-FQIFDNNHWKRGDAFSARYSEILLSGKRWHVSGGGYTEGLRRHVGDR--CTWFTMFRHPVPRLVSAYFYC-KGVPTDAACASERVDAKDVDLLTFAKHWGNFALRQFVLS-RIDVDDFINDSLAQGFHQRSDGLLQD--SGWYMLKKYLKRGIYGSEEEVLPDRALYDMLRPVLELIENNYTAVGLLENFHESLELFNRALGMP----ALDWHESFSQYSIMKQEKE----FAAQEKKVLASAWTNAEIKQYIALDLVLYDHAVAVFNKQKKKYGIL 1106
IF H K GG ++++ + E + N R A Y + K+ GGY+ G+ + D C++FTM R P R VSAY YC K D C + R A +V ++ +A H G+F RQ V + + + N F D W+ K L+R + SE+E L D+L+ V + +EN + +GLL+NF ++ + +P D H++ ++ +Q+ E A ++++LA NA + DLVLY+ A +FN+QK+ + L
Sbjct: 103 IFLHHNKAGGISIRKCMQAVGPESGLNVSRNVFSYRYTAREFDYWKHAARTKQRMGLYGGYSFGVCDVITDGRPCSYFTMIRDPYDRAVSAYLYCSKNASKDQLCTALR--ASEVSVVDWAIHHGSFFFRQLVFNPAVCNGSYDNSPYLSNFDDFPHKFASDVIPCWFKHKVLLQRML--SEKERL------DLLKHVHDNLENYFAVIGLLDNFDLTMGMLQHVYHVPFRDRCSDTHKNQGRFRKRRQKIEADLLVAKLKRELLADPRVNASLHA----DLVLYEKAKQIFNRQKEVFKYL 390 The following BLAST results are available for this feature:
BLAST of mRNA_H-paniculata_contig20088.5170.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 vs UniRef90) Total hits: 25
Pagesback to topAlignments
The following features are aligned
Analyses
This mRNA is derived from or has results from the following analyses
Properties
Relationships
The following polypeptide feature(s) derives from this mRNA:
The following UTR feature(s) are a part of this mRNA:
The following CDS feature(s) are a part of this mRNA:
Sequences
The following sequences are available for this feature:
protein sequence of mRNA_H-paniculata_contig20088.5170.1 >prot_H-paniculata_contig20088.5170.1 ID=prot_H-paniculata_contig20088.5170.1|Name=mRNA_H-paniculata_contig20088.5170.1|organism=Halopteris paniculata Hal_grac_a_UBK monoicous|type=polypeptide|length=350bp MRMLPLTPLPGAALLCAIISLLISGVRGIELSTRKAKDNEIPSNSNVTMLback to top mRNA from alignment at H-paniculata_contig20088:442..2235+ Legend: UTRpolypeptideCDS Hold the cursor over a type above to highlight its positions in the sequence below.>mRNA_H-paniculata_contig20088.5170.1 ID=mRNA_H-paniculata_contig20088.5170.1|Name=mRNA_H-paniculata_contig20088.5170.1|organism=Halopteris paniculata Hal_grac_a_UBK monoicous|type=mRNA|length=1794bp|location=Sequence derived from alignment at H-paniculata_contig20088:442..2235+ (Halopteris paniculata Hal_grac_a_UBK monoicous)back to top Coding sequence (CDS) from alignment at H-paniculata_contig20088:442..2235+ >mRNA_H-paniculata_contig20088.5170.1 ID=mRNA_H-paniculata_contig20088.5170.1|Name=mRNA_H-paniculata_contig20088.5170.1|organism=Halopteris paniculata Hal_grac_a_UBK monoicous|type=CDS|length=2100bp|location=Sequence derived from alignment at H-paniculata_contig20088:442..2235+ (Halopteris paniculata Hal_grac_a_UBK monoicous)back to top |