mRNA_H-paniculata_contig2006.5159.1 (mRNA) Halopteris paniculata Hal_grac_a_UBK monoicous
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Overview
Homology
BLAST of mRNA_H-paniculata_contig2006.5159.1 vs. uniprot
Match: D7FR51_ECTSI (DNA topoisomerase VI subunit B-like protein Topoisomerase 6 subunit B n=1 Tax=Ectocarpus siliculosus TaxID=2880 RepID=D7FR51_ECTSI) HSP 1 Score: 313 bits (802), Expect = 3.230e-100 Identity = 167/204 (81.86%), Postives = 180/204 (88.24%), Query Frame = 1
Query: 1 VKEGVNVYRFANRIPLLFEAGSDVVTRVAMKRINWSSYKVDHKRDKIGVFVSTVSTKIPFKGTSKEYIGDDTEEIKKAVKHALQQCCQQLRAHLVRRNALRDQRERKKVLTKYIPDVSRAVFGLLTAMQKRAAEREED--GVPPKRPKFAVGATAKNRVMAALSTNDITEKVLASGLSAAVDQHDADAVKEEGSTVGRGNHDRQ 606
VKEGVNVYRFANRIPLLFEAGSDVVTRVAMKRINWSSYKVDHKRDKIGVFVSTVSTKIPFKGTSKEYIGDDTEEIKKAVKHALQQCCQQLR HL+RRNALR+Q+ERKKVLTKYIPDVSRAVFGLLTAMQKRA + EED G K A GATAK ++MA+L + ++TEK LA+GLSAAV+QHDA+A KEE GRG H RQ
Sbjct: 422 VKEGVNVYRFANRIPLLFEAGSDVVTRVAMKRINWSSYKVDHKRDKIGVFVSTVSTKIPFKGTSKEYIGDDTEEIKKAVKHALQQCCQQLRTHLLRRNALREQKERKKVLTKYIPDVSRAVFGLLTAMQKRARDGEEDKGGGAGGASKRARGATAKTQIMASLDSKEVTEKTLAAGLSAAVNQHDAEAAKEESVAAGRGTHSRQ 625
BLAST of mRNA_H-paniculata_contig2006.5159.1 vs. uniprot
Match: A0A6V2BEX9_9STRA (Hypothetical protein n=1 Tax=Ditylum brightwellii TaxID=49249 RepID=A0A6V2BEX9_9STRA) HSP 1 Score: 206 bits (525), Expect = 4.270e-60 Identity = 112/196 (57.14%), Postives = 135/196 (68.88%), Query Frame = 1
Query: 4 KEGVNVYRFANRIPLLFEAGSDVVTRVAMKRINWSSYKVDHKRDKIGVFVSTVSTKIPFKGTSKEYIGDDTEEIKKAVKHALQQCCQQLRAHLVRRNALRDQRERKKVLTKYIPDVSRAVFGLLTAMQKRAAEREEDGVPPKRPKFAVGATA-------------KNRVMAALSTNDITEKVLASGLSAAVDQHDA 552
KEG+ V RFANRIPLLFEAG+DV TRVA +I WSSYK+DHKRDKIGVFVS VSTK+PFKGT KEYIGDD EI+ +VK ALQ CCQQLR HL +RNALRDQRER+ L KYIPDVSR++FG+L M+KR + G PK +G + K ++ L + ITEK++ S L A++ H A
Sbjct: 258 KEGITVVRFANRIPLLFEAGADVATRVAQSKIKWSSYKIDHKRDKIGVFVSIVSTKVPFKGTGKEYIGDDITEIQLSVKRALQSCCQQLRTHLAKRNALRDQRERRSRLVKYIPDVSRSIFGILDTMRKRKLDEMNGGSTSLSPKKRLGRSQNTPIRSEDDVDKKKAGIIEKLEKDIITEKIIESHLLDAIESHGA 453
BLAST of mRNA_H-paniculata_contig2006.5159.1 vs. uniprot
Match: A0A6V2BFB6_9STRA (Hypothetical protein n=2 Tax=Ditylum brightwellii TaxID=49249 RepID=A0A6V2BFB6_9STRA) HSP 1 Score: 206 bits (525), Expect = 1.490e-58 Identity = 112/196 (57.14%), Postives = 135/196 (68.88%), Query Frame = 1
Query: 4 KEGVNVYRFANRIPLLFEAGSDVVTRVAMKRINWSSYKVDHKRDKIGVFVSTVSTKIPFKGTSKEYIGDDTEEIKKAVKHALQQCCQQLRAHLVRRNALRDQRERKKVLTKYIPDVSRAVFGLLTAMQKRAAEREEDGVPPKRPKFAVGATA-------------KNRVMAALSTNDITEKVLASGLSAAVDQHDA 552
KEG+ V RFANRIPLLFEAG+DV TRVA +I WSSYK+DHKRDKIGVFVS VSTK+PFKGT KEYIGDD EI+ +VK ALQ CCQQLR HL +RNALRDQRER+ L KYIPDVSR++FG+L M+KR + G PK +G + K ++ L + ITEK++ S L A++ H A
Sbjct: 467 KEGITVVRFANRIPLLFEAGADVATRVAQSKIKWSSYKIDHKRDKIGVFVSIVSTKVPFKGTGKEYIGDDITEIQLSVKRALQSCCQQLRTHLAKRNALRDQRERRSRLVKYIPDVSRSIFGILDTMRKRKLDEMNGGSTSLSPKKRLGRSQNTPIRSEDDVDKKKAGIIEKLEKDIITEKIIESHLLDAIESHGA 662
BLAST of mRNA_H-paniculata_contig2006.5159.1 vs. uniprot
Match: A0A7S3XXS3_HETAK (Hypothetical protein (Fragment) n=1 Tax=Heterosigma akashiwo TaxID=2829 RepID=A0A7S3XXS3_HETAK) HSP 1 Score: 188 bits (478), Expect = 3.230e-57 Identity = 92/138 (66.67%), Postives = 116/138 (84.06%), Query Frame = 1
Query: 1 VKEGVNVYRFANRIPLLFEAGSDVVTRVAMKRINWSSYKVDHKRDKIGVFVSTVSTKIPFKGTSKEYIGDDTEEIKKAVKHALQQCCQQLRAHLVRRNALRDQRERKKVLTKYIPDVSRAVFGLLTAMQKRAAEREED 414
+KEG+NV+RFANRIPLLFE G DV TR A + +NW+ YK+D KRDK+GVFVS VSTKIPFKGT KEYIGDD EE+KKAV+HALQ C QLR HL +RNAL++QR+RKK+LT+Y+PDVSRA+ G+L A+ +R E++ +
Sbjct: 15 LKEGLNVFRFANRIPLLFEGGGDVTTRQA-QALNWTQYKIDAKRDKVGVFVSIVSTKIPFKGTGKEYIGDDIEEMKKAVRHALQMCAAQLRTHLAKRNALKEQRQRKKLLTRYVPDVSRALHGVLLALAERREEQDRE 151
BLAST of mRNA_H-paniculata_contig2006.5159.1 vs. uniprot
Match: B8BZH3_THAPS (Topoisomerase n=1 Tax=Thalassiosira pseudonana TaxID=35128 RepID=B8BZH3_THAPS) HSP 1 Score: 196 bits (497), Expect = 5.450e-55 Identity = 109/202 (53.96%), Postives = 131/202 (64.85%), Query Frame = 1
Query: 4 KEGVNVYRFANRIPLLFEAGSDVVTRVAMKRINWSSYKVDHKRDKIGVFVSTVSTKIPFKGTSKEYIGDDTEEIKKAVKHALQQCCQQLRAHLVRRNALRDQRERKKVLTKYIPDVSRAVFGLLTAMQKRAAEREEDGVPPKRPKFAVGATAKNRVMAALSTNDITEKVLASGLSAAVDQHDADAVKEEGSTVGRGNHDRQD 609
KEG+ V RFANRIPLLFE G+DV TRVA +I WSSYK+DHKRDKIGVFVS VSTK+PFKGT KEYIGDD EI+ +VK ALQ CCQQLR HL +RNALRD +ERK L KYIPDVSR++FG+L M KR E + + +M +++ DIT L+ AV EE + G GN + +D
Sbjct: 428 KEGITVVRFANRIPLLFEGGADVATRVANSKIKWSSYKIDHKRDKIGVFVSIVSTKVPFKGTGKEYIGDDITEIQLSVKRALQNCCQQLRVHLAKRNALRDVKERKSRLLKYIPDVSRSLFGILEGMHKRKLEED------------------SAIMDGIASGDITVDTFKQQLTEAV---------EENAHAGLGNDENED 602
BLAST of mRNA_H-paniculata_contig2006.5159.1 vs. uniprot
Match: A0A7S2S3I5_9STRA (Hypothetical protein (Fragment) n=1 Tax=Eucampia antarctica TaxID=49252 RepID=A0A7S2S3I5_9STRA) HSP 1 Score: 181 bits (459), Expect = 7.420e-55 Identity = 90/125 (72.00%), Postives = 107/125 (85.60%), Query Frame = 1
Query: 1 VKEGVNVYRFANRIPLLFEAGSDVVTRVAMKRINWSSYKVDHKRDKIGVFVSTVSTKIPFKGTSKEYIGDDTEEIKKAVKHALQQCCQQLRAHLVRRNALRDQRERKKVLTKYIPDVSRAVFGLL 375
VKEG+N+ RFANRIPLLFE G+DVVTRVA ++ WSSYK+D+K+DKIGVFVS VSTKIPFKGT KEYIGDD EI+ +VK ALQ CCQQLR+ L++RNA RD RER+ L KY+PDVSR++FGLL
Sbjct: 3 VKEGINIIRFANRIPLLFEGGADVVTRVAQTKLKWSSYKIDYKKDKIGVFVSIVSTKIPFKGTGKEYIGDDITEIQLSVKRALQGCCQQLRSQLLKRNAERDLRERRGRLVKYVPDVSRSLFGLL 127
BLAST of mRNA_H-paniculata_contig2006.5159.1 vs. uniprot
Match: A0A7S2A7W5_TRICV (Hypothetical protein (Fragment) n=1 Tax=Trieres chinensis TaxID=1514140 RepID=A0A7S2A7W5_TRICV) HSP 1 Score: 192 bits (488), Expect = 3.190e-54 Identity = 113/211 (53.55%), Postives = 142/211 (67.30%), Query Frame = 1
Query: 4 KEGVNVYRFANRIPLLFEAGSDVVTRVAMKRINWSSYKVDHKRDKIGVFVSTVSTKIPFKGTSKEYIGDDTEEIKKAVKHALQQCCQQLRAHLVRRNALRDQRERKKVLTKYIPDVSRAVFGLLTAMQKRAAEREEDG------VPPKRPKFAVGATAK-------NRVMAALSTNDITEKVLASGLSAAVD-QHDADAVKEEGSTVGRGN 594
+EG+ V RFANRIPLLFE G+DVVTRVA +I WS YK+DHKRDKIGVFVS VSTK+PFKGT KEYIGDD I+ +VK ALQ CCQQLR+HL +RNALRD +ER+ LT+++PDV R++ GLL M+KR E E++ P K K A ++ + N +M L +ITE ++ S L A++ Q D D V E G G GN
Sbjct: 347 REGITVSRFANRIPLLFEQGADVVTRVANGKIKWSLYKIDHKRDKIGVFVSIVSTKVPFKGTGKEYIGDDITPIQLSVKRALQSCCQQLRSHLTKRNALRDAKERRSRLTRHVPDVGRSLHGLLEQMRKRRREGEDEKRDELKESPRKLTKRARSSSLEPLRQELANEMMNKLEGGEITESLIKSSLMEAIEAQVDEDGV-EAGGNGGTGN 556
BLAST of mRNA_H-paniculata_contig2006.5159.1 vs. uniprot
Match: A0A7S2XJE4_9STRA (Hypothetical protein n=1 Tax=Attheya septentrionalis TaxID=420275 RepID=A0A7S2XJE4_9STRA) HSP 1 Score: 194 bits (493), Expect = 5.890e-54 Identity = 111/212 (52.36%), Postives = 134/212 (63.21%), Query Frame = 1
Query: 4 KEGVNVYRFANRIPLLFEAGSDVVTRVAMKRINWSSYKVDHKRDKIGVFVSTVSTKIPFKGTSKEYIGDDTEEIKKAVKHALQQCCQQLRAHLVRRNALRDQRERKKVLTKYIPDVSRAVFGLLTAMQKRAAE-----REEDGVPPKRP----------KFAVGATAKNRVMAALSTNDITEKVLASGLSAAVDQHDADAVKEEGSTVGRGN 594
KEG+N+ RFANRIPLLFE G+DV TRVA +I WS YK+DHKRDKI VFVS VSTK+PFKGT KEYIGDD EI+ +VK ALQ CCQQLRAHL +RNALRD+RER+ L KY PDVSR++FG+L M+KR E E P KR K + M L +I+ + L GL A++ A + +G G GN
Sbjct: 467 KEGINIVRFANRIPLLFEGGADVATRVAQSKIKWSLYKIDHKRDKINVFVSIVSTKVPFKGTGKEYIGDDITEIQTSVKRALQSCCQQLRAHLTKRNALRDERERRSRLVKYAPDVSRSIFGILEVMRKRKEEDVDGSSEPHSFPRKRARGNLIQAPVLKHVLDPALVQDTMGKLDRGEISVEKLEHGLMEAIE---AQSTSGDGMEGGDGN 675
BLAST of mRNA_H-paniculata_contig2006.5159.1 vs. uniprot
Match: B7G6Z7_PHATC (Type II DNA topoisomerase 6 subunit n=1 Tax=Phaeodactylum tricornutum (strain CCAP 1055/1) TaxID=556484 RepID=B7G6Z7_PHATC) HSP 1 Score: 192 bits (488), Expect = 1.660e-53 Identity = 103/195 (52.82%), Postives = 142/195 (72.82%), Query Frame = 1
Query: 1 VKEGVNVYRFANRIPLLFEAGSDVVTRVAMKRINWSSYKVDHKRDKIGVFVSTVSTKIPFKGTSKEYIGDDTEEIKKAVKHALQQCCQQLRAHLVRRNALRDQRERKKVLTKYIPDVSRAVFGLLTAMQKRAAEREEDGVPPKRP---KFAVGATAKNRVMAALSTNDITEKVLASGLSAAVDQHDADAVKEEGS 576
VKEG+ V RFANRIPLLFE G+DV TRVA +I WS+YK+D+KRD+IGVFVS VSTK+PFKGTSKEYIGDD EI+++VK ALQ CCQQLR +L +R+AL+D + RK + KY+PDV R++FG+L +M+ R AE PP + + + +A ++ L+ ++TE+ LA+ L+ ++D D V+EEG+
Sbjct: 438 VKEGITVIRFANRIPLLFEGGADVATRVANTKIRWSNYKMDYKRDRIGVFVSIVSTKVPFKGTSKEYIGDDATEIQQSVKRALQSCCQQLRGYLAKRSALKDAQTRKSRMAKYVPDVGRSLFGILDSMRARQAELSLPEAPPSQSPTKRLRLDRSAAQLMIERLNRGEVTEQSLAAKLTESID--DQLNVQEEGT 630
BLAST of mRNA_H-paniculata_contig2006.5159.1 vs. uniprot
Match: K0RAA8_THAOC (Uncharacterized protein n=1 Tax=Thalassiosira oceanica TaxID=159749 RepID=K0RAA8_THAOC) HSP 1 Score: 191 bits (484), Expect = 5.400e-53 Identity = 113/199 (56.78%), Postives = 137/199 (68.84%), Query Frame = 1
Query: 4 KEGVNVYRFANRIPLLFEAGSDVVTRVAMKRINWSSYKVDHKRDKIGVFVSTVSTKIPFKGTSKEYIGDDTEEIKKAVKHALQQCCQQLRAHLVRRNALRDQRERKKVLTKYIPDVSRAVFGLLTAMQKRAAEREEDGV-----PPKRPKFAVGATAKNRVMAALSTNDITEKVLASGLSA--AVDQHDADAVKEEGST 579
KEG+ V RFANRIPLLFE G+DV TRVA +I WSSYK+DHKR+KI VFVS VSTK+PFKGT KEYIGDD I+ +VK ALQ CCQQLRAHL +RNALRD +ERK L KYIPDVSR++FG+L M+KR + E DG+ P KR + A+ + RV S D K L G + A+ +H AV+E +T
Sbjct: 426 KEGITVVRFANRIPLLFETGADVATRVANSKIKWSSYKIDHKREKITVFVSIVSTKVPFKGTGKEYIGDDIVPIQASVKKALQTCCQQLRAHLAKRNALRDVKERKSKLLKYIPDVSRSLFGILDGMRKRKLD-EADGLERLASPRKRDQLLSPASKRLRVTK--SEVDAVVKGLEKGKLSEEAIKRHLTQAVEENANT 621 The following BLAST results are available for this feature:
BLAST of mRNA_H-paniculata_contig2006.5159.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 vs UniRef90) Total hits: 25
Pagesback to topAlignments
The following features are aligned
Analyses
This mRNA is derived from or has results from the following analyses
Properties
Relationships
The following polypeptide feature(s) derives from this mRNA:
The following CDS feature(s) are a part of this mRNA:
Sequences
The following sequences are available for this feature:
protein sequence of mRNA_H-paniculata_contig2006.5159.1 >prot_H-paniculata_contig2006.5159.1 ID=prot_H-paniculata_contig2006.5159.1|Name=mRNA_H-paniculata_contig2006.5159.1|organism=Halopteris paniculata Hal_grac_a_UBK monoicous|type=polypeptide|length=243bp VKEGVNVYRFANRIPLLFEAGSDVVTRVAMKRINWSSYKVDHKRDKIGVFback to top mRNA from alignment at H-paniculata_contig2006:4066..6839- Legend: polypeptideCDS Hold the cursor over a type above to highlight its positions in the sequence below.>mRNA_H-paniculata_contig2006.5159.1 ID=mRNA_H-paniculata_contig2006.5159.1|Name=mRNA_H-paniculata_contig2006.5159.1|organism=Halopteris paniculata Hal_grac_a_UBK monoicous|type=mRNA|length=2774bp|location=Sequence derived from alignment at H-paniculata_contig2006:4066..6839- (Halopteris paniculata Hal_grac_a_UBK monoicous)back to top Coding sequence (CDS) from alignment at H-paniculata_contig2006:4066..6839- >mRNA_H-paniculata_contig2006.5159.1 ID=mRNA_H-paniculata_contig2006.5159.1|Name=mRNA_H-paniculata_contig2006.5159.1|organism=Halopteris paniculata Hal_grac_a_UBK monoicous|type=CDS|length=1458bp|location=Sequence derived from alignment at H-paniculata_contig2006:4066..6839- (Halopteris paniculata Hal_grac_a_UBK monoicous)back to top |