prot_H-paniculata_contig2006.5159.1 (polypeptide) Halopteris paniculata Hal_grac_a_UBK monoicous

You are viewing a polypeptide, more information available on the corresponding mRNA page

Overview
NamemRNA_H-paniculata_contig2006.5159.1
Unique Nameprot_H-paniculata_contig2006.5159.1
Typepolypeptide
OrganismHalopteris paniculata Hal_grac_a_UBK monoicous (Halopteris paniculata Hal_grac_a_UBK monoicous)
Sequence length243
Homology
BLAST of mRNA_H-paniculata_contig2006.5159.1 vs. uniprot
Match: D7FR51_ECTSI (DNA topoisomerase VI subunit B-like protein Topoisomerase 6 subunit B n=1 Tax=Ectocarpus siliculosus TaxID=2880 RepID=D7FR51_ECTSI)

HSP 1 Score: 313 bits (802), Expect = 3.230e-100
Identity = 167/204 (81.86%), Postives = 180/204 (88.24%), Query Frame = 0
Query:    1 VKEGVNVYRFANRIPLLFEAGSDVVTRVAMKRINWSSYKVDHKRDKIGVFVSTVSTKIPFKGTSKEYIGDDTEEIKKAVKHALQQCCQQLRAHLVRRNALRDQRERKKVLTKYIPDVSRAVFGLLTAMQKRAAEREED--GVPPKRPKFAVGATAKNRVMAALSTNDITEKVLASGLSAAVDQHDADAVKEEGSTVGRGNHDRQ 202
            VKEGVNVYRFANRIPLLFEAGSDVVTRVAMKRINWSSYKVDHKRDKIGVFVSTVSTKIPFKGTSKEYIGDDTEEIKKAVKHALQQCCQQLR HL+RRNALR+Q+ERKKVLTKYIPDVSRAVFGLLTAMQKRA + EED  G      K A GATAK ++MA+L + ++TEK LA+GLSAAV+QHDA+A KEE    GRG H RQ
Sbjct:  422 VKEGVNVYRFANRIPLLFEAGSDVVTRVAMKRINWSSYKVDHKRDKIGVFVSTVSTKIPFKGTSKEYIGDDTEEIKKAVKHALQQCCQQLRTHLLRRNALREQKERKKVLTKYIPDVSRAVFGLLTAMQKRARDGEEDKGGGAGGASKRARGATAKTQIMASLDSKEVTEKTLAAGLSAAVNQHDAEAAKEESVAAGRGTHSRQ 625          
BLAST of mRNA_H-paniculata_contig2006.5159.1 vs. uniprot
Match: A0A6V2BEX9_9STRA (Hypothetical protein n=1 Tax=Ditylum brightwellii TaxID=49249 RepID=A0A6V2BEX9_9STRA)

HSP 1 Score: 206 bits (525), Expect = 4.270e-60
Identity = 112/196 (57.14%), Postives = 135/196 (68.88%), Query Frame = 0
Query:    2 KEGVNVYRFANRIPLLFEAGSDVVTRVAMKRINWSSYKVDHKRDKIGVFVSTVSTKIPFKGTSKEYIGDDTEEIKKAVKHALQQCCQQLRAHLVRRNALRDQRERKKVLTKYIPDVSRAVFGLLTAMQKRAAEREEDGVPPKRPKFAVGATA-------------KNRVMAALSTNDITEKVLASGLSAAVDQHDA 184
            KEG+ V RFANRIPLLFEAG+DV TRVA  +I WSSYK+DHKRDKIGVFVS VSTK+PFKGT KEYIGDD  EI+ +VK ALQ CCQQLR HL +RNALRDQRER+  L KYIPDVSR++FG+L  M+KR  +    G     PK  +G +              K  ++  L  + ITEK++ S L  A++ H A
Sbjct:  258 KEGITVVRFANRIPLLFEAGADVATRVAQSKIKWSSYKIDHKRDKIGVFVSIVSTKVPFKGTGKEYIGDDITEIQLSVKRALQSCCQQLRTHLAKRNALRDQRERRSRLVKYIPDVSRSIFGILDTMRKRKLDEMNGGSTSLSPKKRLGRSQNTPIRSEDDVDKKKAGIIEKLEKDIITEKIIESHLLDAIESHGA 453          
BLAST of mRNA_H-paniculata_contig2006.5159.1 vs. uniprot
Match: A0A6V2BFB6_9STRA (Hypothetical protein n=2 Tax=Ditylum brightwellii TaxID=49249 RepID=A0A6V2BFB6_9STRA)

HSP 1 Score: 206 bits (525), Expect = 1.490e-58
Identity = 112/196 (57.14%), Postives = 135/196 (68.88%), Query Frame = 0
Query:    2 KEGVNVYRFANRIPLLFEAGSDVVTRVAMKRINWSSYKVDHKRDKIGVFVSTVSTKIPFKGTSKEYIGDDTEEIKKAVKHALQQCCQQLRAHLVRRNALRDQRERKKVLTKYIPDVSRAVFGLLTAMQKRAAEREEDGVPPKRPKFAVGATA-------------KNRVMAALSTNDITEKVLASGLSAAVDQHDA 184
            KEG+ V RFANRIPLLFEAG+DV TRVA  +I WSSYK+DHKRDKIGVFVS VSTK+PFKGT KEYIGDD  EI+ +VK ALQ CCQQLR HL +RNALRDQRER+  L KYIPDVSR++FG+L  M+KR  +    G     PK  +G +              K  ++  L  + ITEK++ S L  A++ H A
Sbjct:  467 KEGITVVRFANRIPLLFEAGADVATRVAQSKIKWSSYKIDHKRDKIGVFVSIVSTKVPFKGTGKEYIGDDITEIQLSVKRALQSCCQQLRTHLAKRNALRDQRERRSRLVKYIPDVSRSIFGILDTMRKRKLDEMNGGSTSLSPKKRLGRSQNTPIRSEDDVDKKKAGIIEKLEKDIITEKIIESHLLDAIESHGA 662          
BLAST of mRNA_H-paniculata_contig2006.5159.1 vs. uniprot
Match: A0A7S3XXS3_HETAK (Hypothetical protein (Fragment) n=1 Tax=Heterosigma akashiwo TaxID=2829 RepID=A0A7S3XXS3_HETAK)

HSP 1 Score: 188 bits (478), Expect = 3.230e-57
Identity = 92/138 (66.67%), Postives = 116/138 (84.06%), Query Frame = 0
Query:    1 VKEGVNVYRFANRIPLLFEAGSDVVTRVAMKRINWSSYKVDHKRDKIGVFVSTVSTKIPFKGTSKEYIGDDTEEIKKAVKHALQQCCQQLRAHLVRRNALRDQRERKKVLTKYIPDVSRAVFGLLTAMQKRAAEREED 138
            +KEG+NV+RFANRIPLLFE G DV TR A + +NW+ YK+D KRDK+GVFVS VSTKIPFKGT KEYIGDD EE+KKAV+HALQ C  QLR HL +RNAL++QR+RKK+LT+Y+PDVSRA+ G+L A+ +R  E++ +
Sbjct:   15 LKEGLNVFRFANRIPLLFEGGGDVTTRQA-QALNWTQYKIDAKRDKVGVFVSIVSTKIPFKGTGKEYIGDDIEEMKKAVRHALQMCAAQLRTHLAKRNALKEQRQRKKLLTRYVPDVSRALHGVLLALAERREEQDRE 151          
BLAST of mRNA_H-paniculata_contig2006.5159.1 vs. uniprot
Match: B8BZH3_THAPS (Topoisomerase n=1 Tax=Thalassiosira pseudonana TaxID=35128 RepID=B8BZH3_THAPS)

HSP 1 Score: 196 bits (497), Expect = 5.450e-55
Identity = 109/202 (53.96%), Postives = 131/202 (64.85%), Query Frame = 0
Query:    2 KEGVNVYRFANRIPLLFEAGSDVVTRVAMKRINWSSYKVDHKRDKIGVFVSTVSTKIPFKGTSKEYIGDDTEEIKKAVKHALQQCCQQLRAHLVRRNALRDQRERKKVLTKYIPDVSRAVFGLLTAMQKRAAEREEDGVPPKRPKFAVGATAKNRVMAALSTNDITEKVLASGLSAAVDQHDADAVKEEGSTVGRGNHDRQD 203
            KEG+ V RFANRIPLLFE G+DV TRVA  +I WSSYK+DHKRDKIGVFVS VSTK+PFKGT KEYIGDD  EI+ +VK ALQ CCQQLR HL +RNALRD +ERK  L KYIPDVSR++FG+L  M KR  E +                  + +M  +++ DIT       L+ AV         EE +  G GN + +D
Sbjct:  428 KEGITVVRFANRIPLLFEGGADVATRVANSKIKWSSYKIDHKRDKIGVFVSIVSTKVPFKGTGKEYIGDDITEIQLSVKRALQNCCQQLRVHLAKRNALRDVKERKSRLLKYIPDVSRSLFGILEGMHKRKLEED------------------SAIMDGIASGDITVDTFKQQLTEAV---------EENAHAGLGNDENED 602          
BLAST of mRNA_H-paniculata_contig2006.5159.1 vs. uniprot
Match: A0A7S2S3I5_9STRA (Hypothetical protein (Fragment) n=1 Tax=Eucampia antarctica TaxID=49252 RepID=A0A7S2S3I5_9STRA)

HSP 1 Score: 181 bits (459), Expect = 7.420e-55
Identity = 90/125 (72.00%), Postives = 107/125 (85.60%), Query Frame = 0
Query:    1 VKEGVNVYRFANRIPLLFEAGSDVVTRVAMKRINWSSYKVDHKRDKIGVFVSTVSTKIPFKGTSKEYIGDDTEEIKKAVKHALQQCCQQLRAHLVRRNALRDQRERKKVLTKYIPDVSRAVFGLL 125
            VKEG+N+ RFANRIPLLFE G+DVVTRVA  ++ WSSYK+D+K+DKIGVFVS VSTKIPFKGT KEYIGDD  EI+ +VK ALQ CCQQLR+ L++RNA RD RER+  L KY+PDVSR++FGLL
Sbjct:    3 VKEGINIIRFANRIPLLFEGGADVVTRVAQTKLKWSSYKIDYKKDKIGVFVSIVSTKIPFKGTGKEYIGDDITEIQLSVKRALQGCCQQLRSQLLKRNAERDLRERRGRLVKYVPDVSRSLFGLL 127          
BLAST of mRNA_H-paniculata_contig2006.5159.1 vs. uniprot
Match: A0A7S2A7W5_TRICV (Hypothetical protein (Fragment) n=1 Tax=Trieres chinensis TaxID=1514140 RepID=A0A7S2A7W5_TRICV)

HSP 1 Score: 192 bits (488), Expect = 3.190e-54
Identity = 113/211 (53.55%), Postives = 142/211 (67.30%), Query Frame = 0
Query:    2 KEGVNVYRFANRIPLLFEAGSDVVTRVAMKRINWSSYKVDHKRDKIGVFVSTVSTKIPFKGTSKEYIGDDTEEIKKAVKHALQQCCQQLRAHLVRRNALRDQRERKKVLTKYIPDVSRAVFGLLTAMQKRAAEREEDG------VPPKRPKFAVGATAK-------NRVMAALSTNDITEKVLASGLSAAVD-QHDADAVKEEGSTVGRGN 198
            +EG+ V RFANRIPLLFE G+DVVTRVA  +I WS YK+DHKRDKIGVFVS VSTK+PFKGT KEYIGDD   I+ +VK ALQ CCQQLR+HL +RNALRD +ER+  LT+++PDV R++ GLL  M+KR  E E++        P K  K A  ++ +       N +M  L   +ITE ++ S L  A++ Q D D V E G   G GN
Sbjct:  347 REGITVSRFANRIPLLFEQGADVVTRVANGKIKWSLYKIDHKRDKIGVFVSIVSTKVPFKGTGKEYIGDDITPIQLSVKRALQSCCQQLRSHLTKRNALRDAKERRSRLTRHVPDVGRSLHGLLEQMRKRRREGEDEKRDELKESPRKLTKRARSSSLEPLRQELANEMMNKLEGGEITESLIKSSLMEAIEAQVDEDGV-EAGGNGGTGN 556          
BLAST of mRNA_H-paniculata_contig2006.5159.1 vs. uniprot
Match: A0A7S2XJE4_9STRA (Hypothetical protein n=1 Tax=Attheya septentrionalis TaxID=420275 RepID=A0A7S2XJE4_9STRA)

HSP 1 Score: 194 bits (493), Expect = 5.890e-54
Identity = 111/212 (52.36%), Postives = 134/212 (63.21%), Query Frame = 0
Query:    2 KEGVNVYRFANRIPLLFEAGSDVVTRVAMKRINWSSYKVDHKRDKIGVFVSTVSTKIPFKGTSKEYIGDDTEEIKKAVKHALQQCCQQLRAHLVRRNALRDQRERKKVLTKYIPDVSRAVFGLLTAMQKRAAE-----REEDGVPPKRP----------KFAVGATAKNRVMAALSTNDITEKVLASGLSAAVDQHDADAVKEEGSTVGRGN 198
            KEG+N+ RFANRIPLLFE G+DV TRVA  +I WS YK+DHKRDKI VFVS VSTK+PFKGT KEYIGDD  EI+ +VK ALQ CCQQLRAHL +RNALRD+RER+  L KY PDVSR++FG+L  M+KR  E      E    P KR           K  +        M  L   +I+ + L  GL  A++   A +   +G   G GN
Sbjct:  467 KEGINIVRFANRIPLLFEGGADVATRVAQSKIKWSLYKIDHKRDKINVFVSIVSTKVPFKGTGKEYIGDDITEIQTSVKRALQSCCQQLRAHLTKRNALRDERERRSRLVKYAPDVSRSIFGILEVMRKRKEEDVDGSSEPHSFPRKRARGNLIQAPVLKHVLDPALVQDTMGKLDRGEISVEKLEHGLMEAIE---AQSTSGDGMEGGDGN 675          
BLAST of mRNA_H-paniculata_contig2006.5159.1 vs. uniprot
Match: B7G6Z7_PHATC (Type II DNA topoisomerase 6 subunit n=1 Tax=Phaeodactylum tricornutum (strain CCAP 1055/1) TaxID=556484 RepID=B7G6Z7_PHATC)

HSP 1 Score: 192 bits (488), Expect = 1.660e-53
Identity = 103/195 (52.82%), Postives = 142/195 (72.82%), Query Frame = 0
Query:    1 VKEGVNVYRFANRIPLLFEAGSDVVTRVAMKRINWSSYKVDHKRDKIGVFVSTVSTKIPFKGTSKEYIGDDTEEIKKAVKHALQQCCQQLRAHLVRRNALRDQRERKKVLTKYIPDVSRAVFGLLTAMQKRAAEREEDGVPPKRP---KFAVGATAKNRVMAALSTNDITEKVLASGLSAAVDQHDADAVKEEGS 192
            VKEG+ V RFANRIPLLFE G+DV TRVA  +I WS+YK+D+KRD+IGVFVS VSTK+PFKGTSKEYIGDD  EI+++VK ALQ CCQQLR +L +R+AL+D + RK  + KY+PDV R++FG+L +M+ R AE      PP +    +  +  +A   ++  L+  ++TE+ LA+ L+ ++D  D   V+EEG+
Sbjct:  438 VKEGITVIRFANRIPLLFEGGADVATRVANTKIRWSNYKMDYKRDRIGVFVSIVSTKVPFKGTSKEYIGDDATEIQQSVKRALQSCCQQLRGYLAKRSALKDAQTRKSRMAKYVPDVGRSLFGILDSMRARQAELSLPEAPPSQSPTKRLRLDRSAAQLMIERLNRGEVTEQSLAAKLTESID--DQLNVQEEGT 630          
BLAST of mRNA_H-paniculata_contig2006.5159.1 vs. uniprot
Match: K0RAA8_THAOC (Uncharacterized protein n=1 Tax=Thalassiosira oceanica TaxID=159749 RepID=K0RAA8_THAOC)

HSP 1 Score: 191 bits (484), Expect = 5.400e-53
Identity = 113/199 (56.78%), Postives = 137/199 (68.84%), Query Frame = 0
Query:    2 KEGVNVYRFANRIPLLFEAGSDVVTRVAMKRINWSSYKVDHKRDKIGVFVSTVSTKIPFKGTSKEYIGDDTEEIKKAVKHALQQCCQQLRAHLVRRNALRDQRERKKVLTKYIPDVSRAVFGLLTAMQKRAAEREEDGV-----PPKRPKFAVGATAKNRVMAALSTNDITEKVLASGLSA--AVDQHDADAVKEEGST 193
            KEG+ V RFANRIPLLFE G+DV TRVA  +I WSSYK+DHKR+KI VFVS VSTK+PFKGT KEYIGDD   I+ +VK ALQ CCQQLRAHL +RNALRD +ERK  L KYIPDVSR++FG+L  M+KR  + E DG+     P KR +    A+ + RV    S  D   K L  G  +  A+ +H   AV+E  +T
Sbjct:  426 KEGITVVRFANRIPLLFETGADVATRVANSKIKWSSYKIDHKREKITVFVSIVSTKVPFKGTGKEYIGDDIVPIQASVKKALQTCCQQLRAHLAKRNALRDVKERKSKLLKYIPDVSRSLFGILDGMRKRKLD-EADGLERLASPRKRDQLLSPASKRLRVTK--SEVDAVVKGLEKGKLSEEAIKRHLTQAVEENANT 621          
The following BLAST results are available for this feature:
BLAST of mRNA_H-paniculata_contig2006.5159.1 vs. uniprot
Analysis Date: 2022-09-16 (Diamond blastp: OGS1.0 vs UniRef90)
Total hits: 25
Match NameE-valueIdentityDescription
D7FR51_ECTSI3.230e-10081.86DNA topoisomerase VI subunit B-like protein Topois... [more]
A0A6V2BEX9_9STRA4.270e-6057.14Hypothetical protein n=1 Tax=Ditylum brightwellii ... [more]
A0A6V2BFB6_9STRA1.490e-5857.14Hypothetical protein n=2 Tax=Ditylum brightwellii ... [more]
A0A7S3XXS3_HETAK3.230e-5766.67Hypothetical protein (Fragment) n=1 Tax=Heterosigm... [more]
B8BZH3_THAPS5.450e-5553.96Topoisomerase n=1 Tax=Thalassiosira pseudonana Tax... [more]
A0A7S2S3I5_9STRA7.420e-5572.00Hypothetical protein (Fragment) n=1 Tax=Eucampia a... [more]
A0A7S2A7W5_TRICV3.190e-5453.55Hypothetical protein (Fragment) n=1 Tax=Trieres ch... [more]
A0A7S2XJE4_9STRA5.890e-5452.36Hypothetical protein n=1 Tax=Attheya septentrional... [more]
B7G6Z7_PHATC1.660e-5352.82Type II DNA topoisomerase 6 subunit n=1 Tax=Phaeod... [more]
K0RAA8_THAOC5.400e-5356.78Uncharacterized protein n=1 Tax=Thalassiosira ocea... [more]

Pages

back to top
InterPro
Analysis Name: InterProScan on OGS1.0
Date Performed: 2022-09-29
IPR TermIPR DescriptionSourceSource TermSource DescriptionAlignment
IPR014721Ribosomal protein S5 domain 2-type fold, subgroupGENE3D3.30.230.10coord: 1..157
e-value: 4.8E-47
score: 162.1
IPR015320DNA topoisomerase VI, subunit B, transducerPFAMPF09239Topo-VIb_transcoord: 3..106
e-value: 1.3E-35
score: 122.5
IPR005734DNA topoisomerase VI, subunit BPANTHERPTHR10871:SF4DNA TOPOISOMERASE 6 SUBUNIT Bcoord: 5..146
NoneNo IPR availablePANTHERPTHR1087130S RIBOSOMAL PROTEIN S13/40S RIBOSOMAL PROTEIN S18coord: 5..146
NoneNo IPR availablePRODOMPD013790coord: 1..147
e-value: 3.0E-46
score: 466.0
IPR020568Ribosomal protein S5 domain 2-type foldSUPERFAMILY54211Ribosomal protein S5 domain 2-likecoord: 2..108

Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
H-paniculata_contig2006contigH-paniculata_contig2006:4066..6839 -
Analyses
This polypeptide is derived from or has results from the following analyses
Analysis NameDate Performed
InterProScan on OGS1.02022-09-29
Diamond blastp: OGS1.0 vs UniRef902022-09-16
OGS1.0 of Halopteris paniculata Hal_grac_a_UBK monoicous2021-02-24
Relationships

This polypeptide derives from the following mRNA feature(s):

Feature NameUnique NameSpeciesTypePosition
mRNA_H-paniculata_contig2006.5159.1mRNA_H-paniculata_contig2006.5159.1Halopteris paniculata Hal_grac_a_UBK monoicousmRNAH-paniculata_contig2006 4066..6839 -


Sequences
The following sequences are available for this feature:

polypeptide sequence

>prot_H-paniculata_contig2006.5159.1 ID=prot_H-paniculata_contig2006.5159.1|Name=mRNA_H-paniculata_contig2006.5159.1|organism=Halopteris paniculata Hal_grac_a_UBK monoicous|type=polypeptide|length=243bp
VKEGVNVYRFANRIPLLFEAGSDVVTRVAMKRINWSSYKVDHKRDKIGVF
VSTVSTKIPFKGTSKEYIGDDTEEIKKAVKHALQQCCQQLRAHLVRRNAL
RDQRERKKVLTKYIPDVSRAVFGLLTAMQKRAAEREEDGVPPKRPKFAVG
ATAKNRVMAALSTNDITEKVLASGLSAAVDQHDADAVKEEGSTVGRGNHD
RQDVIICALPRRRTQEQDDVFAPTIFHTQCTFSLRLLRSALH*
back to top
Annotated Terms
The following terms have been associated with this polypeptide:
Vocabulary: INTERPRO
TermDefinition
IPR014721Ribosomal_S5_D2-typ_fold_subgr
IPR015320TopoVI_B_transducer
IPR005734TopoVI_B
IPR020568Ribosomal_S5_D2-typ_fold