mRNA_H-paniculata_contig2006.5159.1 (mRNA) Halopteris paniculata Hal_grac_a_UBK monoicous

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_H-paniculata_contig2006.5159.1
Unique NamemRNA_H-paniculata_contig2006.5159.1
TypemRNA
OrganismHalopteris paniculata Hal_grac_a_UBK monoicous (Halopteris paniculata Hal_grac_a_UBK monoicous)
Homology
BLAST of mRNA_H-paniculata_contig2006.5159.1 vs. uniprot
Match: D7FR51_ECTSI (DNA topoisomerase VI subunit B-like protein Topoisomerase 6 subunit B n=1 Tax=Ectocarpus siliculosus TaxID=2880 RepID=D7FR51_ECTSI)

HSP 1 Score: 313 bits (802), Expect = 3.230e-100
Identity = 167/204 (81.86%), Postives = 180/204 (88.24%), Query Frame = 1
Query:    1 VKEGVNVYRFANRIPLLFEAGSDVVTRVAMKRINWSSYKVDHKRDKIGVFVSTVSTKIPFKGTSKEYIGDDTEEIKKAVKHALQQCCQQLRAHLVRRNALRDQRERKKVLTKYIPDVSRAVFGLLTAMQKRAAEREED--GVPPKRPKFAVGATAKNRVMAALSTNDITEKVLASGLSAAVDQHDADAVKEEGSTVGRGNHDRQ 606
            VKEGVNVYRFANRIPLLFEAGSDVVTRVAMKRINWSSYKVDHKRDKIGVFVSTVSTKIPFKGTSKEYIGDDTEEIKKAVKHALQQCCQQLR HL+RRNALR+Q+ERKKVLTKYIPDVSRAVFGLLTAMQKRA + EED  G      K A GATAK ++MA+L + ++TEK LA+GLSAAV+QHDA+A KEE    GRG H RQ
Sbjct:  422 VKEGVNVYRFANRIPLLFEAGSDVVTRVAMKRINWSSYKVDHKRDKIGVFVSTVSTKIPFKGTSKEYIGDDTEEIKKAVKHALQQCCQQLRTHLLRRNALREQKERKKVLTKYIPDVSRAVFGLLTAMQKRARDGEEDKGGGAGGASKRARGATAKTQIMASLDSKEVTEKTLAAGLSAAVNQHDAEAAKEESVAAGRGTHSRQ 625          
BLAST of mRNA_H-paniculata_contig2006.5159.1 vs. uniprot
Match: A0A6V2BEX9_9STRA (Hypothetical protein n=1 Tax=Ditylum brightwellii TaxID=49249 RepID=A0A6V2BEX9_9STRA)

HSP 1 Score: 206 bits (525), Expect = 4.270e-60
Identity = 112/196 (57.14%), Postives = 135/196 (68.88%), Query Frame = 1
Query:    4 KEGVNVYRFANRIPLLFEAGSDVVTRVAMKRINWSSYKVDHKRDKIGVFVSTVSTKIPFKGTSKEYIGDDTEEIKKAVKHALQQCCQQLRAHLVRRNALRDQRERKKVLTKYIPDVSRAVFGLLTAMQKRAAEREEDGVPPKRPKFAVGATA-------------KNRVMAALSTNDITEKVLASGLSAAVDQHDA 552
            KEG+ V RFANRIPLLFEAG+DV TRVA  +I WSSYK+DHKRDKIGVFVS VSTK+PFKGT KEYIGDD  EI+ +VK ALQ CCQQLR HL +RNALRDQRER+  L KYIPDVSR++FG+L  M+KR  +    G     PK  +G +              K  ++  L  + ITEK++ S L  A++ H A
Sbjct:  258 KEGITVVRFANRIPLLFEAGADVATRVAQSKIKWSSYKIDHKRDKIGVFVSIVSTKVPFKGTGKEYIGDDITEIQLSVKRALQSCCQQLRTHLAKRNALRDQRERRSRLVKYIPDVSRSIFGILDTMRKRKLDEMNGGSTSLSPKKRLGRSQNTPIRSEDDVDKKKAGIIEKLEKDIITEKIIESHLLDAIESHGA 453          
BLAST of mRNA_H-paniculata_contig2006.5159.1 vs. uniprot
Match: A0A6V2BFB6_9STRA (Hypothetical protein n=2 Tax=Ditylum brightwellii TaxID=49249 RepID=A0A6V2BFB6_9STRA)

HSP 1 Score: 206 bits (525), Expect = 1.490e-58
Identity = 112/196 (57.14%), Postives = 135/196 (68.88%), Query Frame = 1
Query:    4 KEGVNVYRFANRIPLLFEAGSDVVTRVAMKRINWSSYKVDHKRDKIGVFVSTVSTKIPFKGTSKEYIGDDTEEIKKAVKHALQQCCQQLRAHLVRRNALRDQRERKKVLTKYIPDVSRAVFGLLTAMQKRAAEREEDGVPPKRPKFAVGATA-------------KNRVMAALSTNDITEKVLASGLSAAVDQHDA 552
            KEG+ V RFANRIPLLFEAG+DV TRVA  +I WSSYK+DHKRDKIGVFVS VSTK+PFKGT KEYIGDD  EI+ +VK ALQ CCQQLR HL +RNALRDQRER+  L KYIPDVSR++FG+L  M+KR  +    G     PK  +G +              K  ++  L  + ITEK++ S L  A++ H A
Sbjct:  467 KEGITVVRFANRIPLLFEAGADVATRVAQSKIKWSSYKIDHKRDKIGVFVSIVSTKVPFKGTGKEYIGDDITEIQLSVKRALQSCCQQLRTHLAKRNALRDQRERRSRLVKYIPDVSRSIFGILDTMRKRKLDEMNGGSTSLSPKKRLGRSQNTPIRSEDDVDKKKAGIIEKLEKDIITEKIIESHLLDAIESHGA 662          
BLAST of mRNA_H-paniculata_contig2006.5159.1 vs. uniprot
Match: A0A7S3XXS3_HETAK (Hypothetical protein (Fragment) n=1 Tax=Heterosigma akashiwo TaxID=2829 RepID=A0A7S3XXS3_HETAK)

HSP 1 Score: 188 bits (478), Expect = 3.230e-57
Identity = 92/138 (66.67%), Postives = 116/138 (84.06%), Query Frame = 1
Query:    1 VKEGVNVYRFANRIPLLFEAGSDVVTRVAMKRINWSSYKVDHKRDKIGVFVSTVSTKIPFKGTSKEYIGDDTEEIKKAVKHALQQCCQQLRAHLVRRNALRDQRERKKVLTKYIPDVSRAVFGLLTAMQKRAAEREED 414
            +KEG+NV+RFANRIPLLFE G DV TR A + +NW+ YK+D KRDK+GVFVS VSTKIPFKGT KEYIGDD EE+KKAV+HALQ C  QLR HL +RNAL++QR+RKK+LT+Y+PDVSRA+ G+L A+ +R  E++ +
Sbjct:   15 LKEGLNVFRFANRIPLLFEGGGDVTTRQA-QALNWTQYKIDAKRDKVGVFVSIVSTKIPFKGTGKEYIGDDIEEMKKAVRHALQMCAAQLRTHLAKRNALKEQRQRKKLLTRYVPDVSRALHGVLLALAERREEQDRE 151          
BLAST of mRNA_H-paniculata_contig2006.5159.1 vs. uniprot
Match: B8BZH3_THAPS (Topoisomerase n=1 Tax=Thalassiosira pseudonana TaxID=35128 RepID=B8BZH3_THAPS)

HSP 1 Score: 196 bits (497), Expect = 5.450e-55
Identity = 109/202 (53.96%), Postives = 131/202 (64.85%), Query Frame = 1
Query:    4 KEGVNVYRFANRIPLLFEAGSDVVTRVAMKRINWSSYKVDHKRDKIGVFVSTVSTKIPFKGTSKEYIGDDTEEIKKAVKHALQQCCQQLRAHLVRRNALRDQRERKKVLTKYIPDVSRAVFGLLTAMQKRAAEREEDGVPPKRPKFAVGATAKNRVMAALSTNDITEKVLASGLSAAVDQHDADAVKEEGSTVGRGNHDRQD 609
            KEG+ V RFANRIPLLFE G+DV TRVA  +I WSSYK+DHKRDKIGVFVS VSTK+PFKGT KEYIGDD  EI+ +VK ALQ CCQQLR HL +RNALRD +ERK  L KYIPDVSR++FG+L  M KR  E +                  + +M  +++ DIT       L+ AV         EE +  G GN + +D
Sbjct:  428 KEGITVVRFANRIPLLFEGGADVATRVANSKIKWSSYKIDHKRDKIGVFVSIVSTKVPFKGTGKEYIGDDITEIQLSVKRALQNCCQQLRVHLAKRNALRDVKERKSRLLKYIPDVSRSLFGILEGMHKRKLEED------------------SAIMDGIASGDITVDTFKQQLTEAV---------EENAHAGLGNDENED 602          
BLAST of mRNA_H-paniculata_contig2006.5159.1 vs. uniprot
Match: A0A7S2S3I5_9STRA (Hypothetical protein (Fragment) n=1 Tax=Eucampia antarctica TaxID=49252 RepID=A0A7S2S3I5_9STRA)

HSP 1 Score: 181 bits (459), Expect = 7.420e-55
Identity = 90/125 (72.00%), Postives = 107/125 (85.60%), Query Frame = 1
Query:    1 VKEGVNVYRFANRIPLLFEAGSDVVTRVAMKRINWSSYKVDHKRDKIGVFVSTVSTKIPFKGTSKEYIGDDTEEIKKAVKHALQQCCQQLRAHLVRRNALRDQRERKKVLTKYIPDVSRAVFGLL 375
            VKEG+N+ RFANRIPLLFE G+DVVTRVA  ++ WSSYK+D+K+DKIGVFVS VSTKIPFKGT KEYIGDD  EI+ +VK ALQ CCQQLR+ L++RNA RD RER+  L KY+PDVSR++FGLL
Sbjct:    3 VKEGINIIRFANRIPLLFEGGADVVTRVAQTKLKWSSYKIDYKKDKIGVFVSIVSTKIPFKGTGKEYIGDDITEIQLSVKRALQGCCQQLRSQLLKRNAERDLRERRGRLVKYVPDVSRSLFGLL 127          
BLAST of mRNA_H-paniculata_contig2006.5159.1 vs. uniprot
Match: A0A7S2A7W5_TRICV (Hypothetical protein (Fragment) n=1 Tax=Trieres chinensis TaxID=1514140 RepID=A0A7S2A7W5_TRICV)

HSP 1 Score: 192 bits (488), Expect = 3.190e-54
Identity = 113/211 (53.55%), Postives = 142/211 (67.30%), Query Frame = 1
Query:    4 KEGVNVYRFANRIPLLFEAGSDVVTRVAMKRINWSSYKVDHKRDKIGVFVSTVSTKIPFKGTSKEYIGDDTEEIKKAVKHALQQCCQQLRAHLVRRNALRDQRERKKVLTKYIPDVSRAVFGLLTAMQKRAAEREEDG------VPPKRPKFAVGATAK-------NRVMAALSTNDITEKVLASGLSAAVD-QHDADAVKEEGSTVGRGN 594
            +EG+ V RFANRIPLLFE G+DVVTRVA  +I WS YK+DHKRDKIGVFVS VSTK+PFKGT KEYIGDD   I+ +VK ALQ CCQQLR+HL +RNALRD +ER+  LT+++PDV R++ GLL  M+KR  E E++        P K  K A  ++ +       N +M  L   +ITE ++ S L  A++ Q D D V E G   G GN
Sbjct:  347 REGITVSRFANRIPLLFEQGADVVTRVANGKIKWSLYKIDHKRDKIGVFVSIVSTKVPFKGTGKEYIGDDITPIQLSVKRALQSCCQQLRSHLTKRNALRDAKERRSRLTRHVPDVGRSLHGLLEQMRKRRREGEDEKRDELKESPRKLTKRARSSSLEPLRQELANEMMNKLEGGEITESLIKSSLMEAIEAQVDEDGV-EAGGNGGTGN 556          
BLAST of mRNA_H-paniculata_contig2006.5159.1 vs. uniprot
Match: A0A7S2XJE4_9STRA (Hypothetical protein n=1 Tax=Attheya septentrionalis TaxID=420275 RepID=A0A7S2XJE4_9STRA)

HSP 1 Score: 194 bits (493), Expect = 5.890e-54
Identity = 111/212 (52.36%), Postives = 134/212 (63.21%), Query Frame = 1
Query:    4 KEGVNVYRFANRIPLLFEAGSDVVTRVAMKRINWSSYKVDHKRDKIGVFVSTVSTKIPFKGTSKEYIGDDTEEIKKAVKHALQQCCQQLRAHLVRRNALRDQRERKKVLTKYIPDVSRAVFGLLTAMQKRAAE-----REEDGVPPKRP----------KFAVGATAKNRVMAALSTNDITEKVLASGLSAAVDQHDADAVKEEGSTVGRGN 594
            KEG+N+ RFANRIPLLFE G+DV TRVA  +I WS YK+DHKRDKI VFVS VSTK+PFKGT KEYIGDD  EI+ +VK ALQ CCQQLRAHL +RNALRD+RER+  L KY PDVSR++FG+L  M+KR  E      E    P KR           K  +        M  L   +I+ + L  GL  A++   A +   +G   G GN
Sbjct:  467 KEGINIVRFANRIPLLFEGGADVATRVAQSKIKWSLYKIDHKRDKINVFVSIVSTKVPFKGTGKEYIGDDITEIQTSVKRALQSCCQQLRAHLTKRNALRDERERRSRLVKYAPDVSRSIFGILEVMRKRKEEDVDGSSEPHSFPRKRARGNLIQAPVLKHVLDPALVQDTMGKLDRGEISVEKLEHGLMEAIE---AQSTSGDGMEGGDGN 675          
BLAST of mRNA_H-paniculata_contig2006.5159.1 vs. uniprot
Match: B7G6Z7_PHATC (Type II DNA topoisomerase 6 subunit n=1 Tax=Phaeodactylum tricornutum (strain CCAP 1055/1) TaxID=556484 RepID=B7G6Z7_PHATC)

HSP 1 Score: 192 bits (488), Expect = 1.660e-53
Identity = 103/195 (52.82%), Postives = 142/195 (72.82%), Query Frame = 1
Query:    1 VKEGVNVYRFANRIPLLFEAGSDVVTRVAMKRINWSSYKVDHKRDKIGVFVSTVSTKIPFKGTSKEYIGDDTEEIKKAVKHALQQCCQQLRAHLVRRNALRDQRERKKVLTKYIPDVSRAVFGLLTAMQKRAAEREEDGVPPKRP---KFAVGATAKNRVMAALSTNDITEKVLASGLSAAVDQHDADAVKEEGS 576
            VKEG+ V RFANRIPLLFE G+DV TRVA  +I WS+YK+D+KRD+IGVFVS VSTK+PFKGTSKEYIGDD  EI+++VK ALQ CCQQLR +L +R+AL+D + RK  + KY+PDV R++FG+L +M+ R AE      PP +    +  +  +A   ++  L+  ++TE+ LA+ L+ ++D  D   V+EEG+
Sbjct:  438 VKEGITVIRFANRIPLLFEGGADVATRVANTKIRWSNYKMDYKRDRIGVFVSIVSTKVPFKGTSKEYIGDDATEIQQSVKRALQSCCQQLRGYLAKRSALKDAQTRKSRMAKYVPDVGRSLFGILDSMRARQAELSLPEAPPSQSPTKRLRLDRSAAQLMIERLNRGEVTEQSLAAKLTESID--DQLNVQEEGT 630          
BLAST of mRNA_H-paniculata_contig2006.5159.1 vs. uniprot
Match: K0RAA8_THAOC (Uncharacterized protein n=1 Tax=Thalassiosira oceanica TaxID=159749 RepID=K0RAA8_THAOC)

HSP 1 Score: 191 bits (484), Expect = 5.400e-53
Identity = 113/199 (56.78%), Postives = 137/199 (68.84%), Query Frame = 1
Query:    4 KEGVNVYRFANRIPLLFEAGSDVVTRVAMKRINWSSYKVDHKRDKIGVFVSTVSTKIPFKGTSKEYIGDDTEEIKKAVKHALQQCCQQLRAHLVRRNALRDQRERKKVLTKYIPDVSRAVFGLLTAMQKRAAEREEDGV-----PPKRPKFAVGATAKNRVMAALSTNDITEKVLASGLSA--AVDQHDADAVKEEGST 579
            KEG+ V RFANRIPLLFE G+DV TRVA  +I WSSYK+DHKR+KI VFVS VSTK+PFKGT KEYIGDD   I+ +VK ALQ CCQQLRAHL +RNALRD +ERK  L KYIPDVSR++FG+L  M+KR  + E DG+     P KR +    A+ + RV    S  D   K L  G  +  A+ +H   AV+E  +T
Sbjct:  426 KEGITVVRFANRIPLLFETGADVATRVANSKIKWSSYKIDHKREKITVFVSIVSTKVPFKGTGKEYIGDDIVPIQASVKKALQTCCQQLRAHLAKRNALRDVKERKSKLLKYIPDVSRSLFGILDGMRKRKLD-EADGLERLASPRKRDQLLSPASKRLRVTK--SEVDAVVKGLEKGKLSEEAIKRHLTQAVEENANT 621          
The following BLAST results are available for this feature:
BLAST of mRNA_H-paniculata_contig2006.5159.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 vs UniRef90)
Total hits: 25
Match NameE-valueIdentityDescription
D7FR51_ECTSI3.230e-10081.86DNA topoisomerase VI subunit B-like protein Topois... [more]
A0A6V2BEX9_9STRA4.270e-6057.14Hypothetical protein n=1 Tax=Ditylum brightwellii ... [more]
A0A6V2BFB6_9STRA1.490e-5857.14Hypothetical protein n=2 Tax=Ditylum brightwellii ... [more]
A0A7S3XXS3_HETAK3.230e-5766.67Hypothetical protein (Fragment) n=1 Tax=Heterosigm... [more]
B8BZH3_THAPS5.450e-5553.96Topoisomerase n=1 Tax=Thalassiosira pseudonana Tax... [more]
A0A7S2S3I5_9STRA7.420e-5572.00Hypothetical protein (Fragment) n=1 Tax=Eucampia a... [more]
A0A7S2A7W5_TRICV3.190e-5453.55Hypothetical protein (Fragment) n=1 Tax=Trieres ch... [more]
A0A7S2XJE4_9STRA5.890e-5452.36Hypothetical protein n=1 Tax=Attheya septentrional... [more]
B7G6Z7_PHATC1.660e-5352.82Type II DNA topoisomerase 6 subunit n=1 Tax=Phaeod... [more]
K0RAA8_THAOC5.400e-5356.78Uncharacterized protein n=1 Tax=Thalassiosira ocea... [more]

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Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
H-paniculata_contig2006contigH-paniculata_contig2006:4066..6839 -
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 vs UniRef902022-09-19
OGS1.0 of Halopteris paniculata Hal_grac_a_UBK monoicous2021-02-24
Properties
Property NameValue
Taxonomic scopeEukaryota
Seed ortholog score199.5
Seed ortholog evalue1.8e-48
Seed eggNOG ortholog35128.Thaps40335
Preferred nameTOP6B
KEGG koko:K03167
Hectar predicted targeting categoryother localisation
GOsGO:0000902,GO:0003674,GO:0003735,GO:0003824,GO:0003916,GO:0003918,GO:0005198,GO:0005488,GO:0005515,GO:0005575,GO:0005622,GO:0005623,GO:0005737,GO:0005829,GO:0005840,GO:0006139,GO:0006259,GO:0006260,GO:0006261,GO:0006412,GO:0006518,GO:0006725,GO:0006807,GO:0007049,GO:0007275,GO:0007389,GO:0008094,GO:0008150,GO:0008152,GO:0009058,GO:0009059,GO:0009330,GO:0009653,GO:0009719,GO:0009725,GO:0009741,GO:0009888,GO:0009987,GO:0010026,GO:0010033,GO:0010467,GO:0014070,GO:0015935,GO:0016043,GO:0016462,GO:0016787,GO:0016817,GO:0016818,GO:0016853,GO:0016887,GO:0017111,GO:0019538,GO:0022402,GO:0022613,GO:0030154,GO:0032501,GO:0032502,GO:0032989,GO:0032991,GO:0033993,GO:0034641,GO:0034645,GO:0042023,GO:0042221,GO:0042254,GO:0042623,GO:0042802,GO:0042803,GO:0043043,GO:0043170,GO:0043226,GO:0043228,GO:0043229,GO:0043232,GO:0043603,GO:0043604,GO:0044085,GO:0044237,GO:0044238,GO:0044249,GO:0044260,GO:0044267,GO:0044271,GO:0044391,GO:0044422,GO:0044424,GO:0044444,GO:0044446,GO:0044464,GO:0044786,GO:0046483,GO:0046983,GO:0048856,GO:0048869,GO:0050896,GO:0061505,GO:0071704,GO:0071840,GO:0090304,GO:0090558,GO:0140097,GO:1901360,GO:1901564,GO:1901566,GO:1901576,GO:1901700,GO:1990904
EggNOG free text desc.Topoisomerase VI B subunit, transducer
EggNOG OGs2QQC0@2759,2XB30@2836,COG1389@1
Ec32 ortholog descriptionTopoisomerase 6 subunit B
Ec32 orthologEc-09_003480.1
EC5.99.1.3
COG Functional cat.L
Best tax levelBacillariophyta
Best eggNOG OGNA|NA|NA
BRITEko00000,ko01000,ko03032
Exons6
Model size729
Cds size729
Stop1
Start0
Relationships

The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_H-paniculata_contig2006.5159.1prot_H-paniculata_contig2006.5159.1Halopteris paniculata Hal_grac_a_UBK monoicouspolypeptideH-paniculata_contig2006 4066..6839 -


The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1622929514.072534-CDS-H-paniculata_contig2006:4065..41881622929514.072534-CDS-H-paniculata_contig2006:4065..4188Halopteris paniculata Hal_grac_a_UBK monoicousCDSH-paniculata_contig2006 4066..4188 -
1691480893.9585934-CDS-H-paniculata_contig2006:4065..41881691480893.9585934-CDS-H-paniculata_contig2006:4065..4188Halopteris paniculata Hal_grac_a_UBK monoicousCDSH-paniculata_contig2006 4066..4188 -
1622929514.0930834-CDS-H-paniculata_contig2006:5195..53391622929514.0930834-CDS-H-paniculata_contig2006:5195..5339Halopteris paniculata Hal_grac_a_UBK monoicousCDSH-paniculata_contig2006 5196..5339 -
1691480893.971558-CDS-H-paniculata_contig2006:5195..53391691480893.971558-CDS-H-paniculata_contig2006:5195..5339Halopteris paniculata Hal_grac_a_UBK monoicousCDSH-paniculata_contig2006 5196..5339 -
1622929514.1110876-CDS-H-paniculata_contig2006:5585..57111622929514.1110876-CDS-H-paniculata_contig2006:5585..5711Halopteris paniculata Hal_grac_a_UBK monoicousCDSH-paniculata_contig2006 5586..5711 -
1691480893.9874897-CDS-H-paniculata_contig2006:5585..57111691480893.9874897-CDS-H-paniculata_contig2006:5585..5711Halopteris paniculata Hal_grac_a_UBK monoicousCDSH-paniculata_contig2006 5586..5711 -
1622929514.1254718-CDS-H-paniculata_contig2006:5864..60171622929514.1254718-CDS-H-paniculata_contig2006:5864..6017Halopteris paniculata Hal_grac_a_UBK monoicousCDSH-paniculata_contig2006 5865..6017 -
1691480894.0014353-CDS-H-paniculata_contig2006:5864..60171691480894.0014353-CDS-H-paniculata_contig2006:5864..6017Halopteris paniculata Hal_grac_a_UBK monoicousCDSH-paniculata_contig2006 5865..6017 -
1622929514.1400719-CDS-H-paniculata_contig2006:6382..64641622929514.1400719-CDS-H-paniculata_contig2006:6382..6464Halopteris paniculata Hal_grac_a_UBK monoicousCDSH-paniculata_contig2006 6383..6464 -
1691480894.009589-CDS-H-paniculata_contig2006:6382..64641691480894.009589-CDS-H-paniculata_contig2006:6382..6464Halopteris paniculata Hal_grac_a_UBK monoicousCDSH-paniculata_contig2006 6383..6464 -
1622929514.161378-CDS-H-paniculata_contig2006:6738..68391622929514.161378-CDS-H-paniculata_contig2006:6738..6839Halopteris paniculata Hal_grac_a_UBK monoicousCDSH-paniculata_contig2006 6739..6839 -
1691480894.0172532-CDS-H-paniculata_contig2006:6738..68391691480894.0172532-CDS-H-paniculata_contig2006:6738..6839Halopteris paniculata Hal_grac_a_UBK monoicousCDSH-paniculata_contig2006 6739..6839 -


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_H-paniculata_contig2006.5159.1

>prot_H-paniculata_contig2006.5159.1 ID=prot_H-paniculata_contig2006.5159.1|Name=mRNA_H-paniculata_contig2006.5159.1|organism=Halopteris paniculata Hal_grac_a_UBK monoicous|type=polypeptide|length=243bp
VKEGVNVYRFANRIPLLFEAGSDVVTRVAMKRINWSSYKVDHKRDKIGVF
VSTVSTKIPFKGTSKEYIGDDTEEIKKAVKHALQQCCQQLRAHLVRRNAL
RDQRERKKVLTKYIPDVSRAVFGLLTAMQKRAAEREEDGVPPKRPKFAVG
ATAKNRVMAALSTNDITEKVLASGLSAAVDQHDADAVKEEGSTVGRGNHD
RQDVIICALPRRRTQEQDDVFAPTIFHTQCTFSLRLLRSALH*
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mRNA from alignment at H-paniculata_contig2006:4066..6839-

Legend: polypeptideCDS
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_H-paniculata_contig2006.5159.1 ID=mRNA_H-paniculata_contig2006.5159.1|Name=mRNA_H-paniculata_contig2006.5159.1|organism=Halopteris paniculata Hal_grac_a_UBK monoicous|type=mRNA|length=2774bp|location=Sequence derived from alignment at H-paniculata_contig2006:4066..6839- (Halopteris paniculata Hal_grac_a_UBK monoicous)
GTGAAGGAAGGTGTCAACGTGTACCGCTTCGCTAACCGCATCCCGCTTTT ATTCGAGGCTGGTAGCGACGTGGTCACGCGGGTAGCAATGAAGAGGATAA AGTGAGTTATCAATCGTCTCAATAATCTCCTTTCTATTTGTGAGAGCTAG CTAGCTACATGGAGCTAGCATCTACACGCCTTGAGTGATAACCGTTGATG TTTTGCGTTTACACCCGCCTGCTGTGTTGATAGTCGAAGGTAGAATGTGC TGGAGCGGCAGGCTCTGGAATCACAAGCAAATTAACGCGTACGCTAGCGG TTTCTCCATGTCTTGCCTCTAACTGCGAAATTGCTGTTGACTGGCGATGC TTTGCACGTTGGTTCCCAATCTCAGCTGGAGCTCGTACAAGGTAGATCAC AAGCGCGACAAAATTGGCGTTTTCGTCTCCACCGTCAGCACCAAAATCCC CTTCAAGGTGAGGAAGACGCTAATGAAAGTATTCGTCGCCTCCACAGCTT CCACATGCTCGTCGTGCTTTGGTCCGCGAAGCTATGAAGTGGAAGAAATC ATCCTCGCTCTCCTTGCTGTAATATCTATATGTATCGGAGTATGTGTGAT GGCTGCATCACTACACGAGTACAAGCCGGTGGGAGGAGCTTGCACGGCCA AGTCGAACACATACAGCAGGGCACATACCGTACAAGAAGCTTTCGAGAGT ACGTTTTCAATAACTAAATAACGCGAACGCAGATTCTATGGTCGCGGTTG GTGATATGGCAAAAACCTTGTGCGTCTGACTTTCTATCTTCCGCAATGCG CCTTCACTTTGGAGGGATGTAGGGCACCAGCAAGGAATACATCGGCGATG ACACCGAAGAGATAAAAAAGGCGGTGAAACACGCGCTTCAGCAGTGCTGC CAGCAGCTTCGCGCGCATCTCGTCAGGAGAAACGCGCTCCGTGACCAACG GGAGAGGAAGAAGGTTCTTACCAAAGTGAGTACGTCGCTAGGTTAGACAG GCTAGAGCCCTTTCGGATATGTTGCGCTGTTCACGTTGCGTCTCGTTTGT ATACCTCGCACGGGGGTCGAAGAAATGCGGGATGATATTGTTTGTCCGTG CACGTGTCGCCCTTTCCGGACCATGCAGTACATTCCCGACGTCAGCAGGG CGGTCTTCGGACTGCTGACCGCTATGCAAAAGCGCGCTGCTGAGAGAGAG GAAGATGGCGTACCGCCGAAGAGGCCTAAATTCGCCGTGGGCGCCACCGC AAAGGTGGGAAGTTGTGCTTTTTTTTGGAAGATTCTGTTGTTGAGGCATT TTGGCTGTGAGCTCTCCGCTGAGTAAAAATTCAGCCCATAAATAGAAGCG CTCCTCCTGTCATGTTGACCGACAAAAGCACTCCTGAAGTCCTCTGCCAC GAAGAACAAATGTGAATCTACACTGTGTCATGAAGTGAAACAGATGAATT CAAACGGATTCGTTCCCCGCCAAAACTGCAAACTACTCCCCCCTGAACAG AACCGGGTCATGGCAGCATTAAGCACCAACGACATCACAGAAAAGGTTCT TGCGTCTGGACTCAGCGCTGCAGTTGACCAGCACGACGCGGATGCAGTCA AAGAGGAGGGTAGCACAGTCGGGAGGGGTAACCACGACCGACAGGTGAGA ATGCGCGCGGAAGCAATGCTGTTCACGTACATGTGGATATCATGGTCGTA TACTTCATTCAATCTTTTTTCCACCTTCGTTAGAATTATCCCGATTGGAA AAAGTAGGTTGCCTCATCGGCTGCTGCCCGATTTGTAACTTCGCAGAGTG TGACATCGCTTGATGTAGTGCGCATCTTGCGTCGATCAAGTGAAACATTC AGGGAAAAAATGTTATTTATGTGGTGTAACATACACGCATTTAGCGTAAC CACCCTTCGCTACGCTCATAAATGACCTAAACCCCACTCTCTCCTTACCG CGTCTGTCCTATCCACCCCAACCCCGGCAACGAATATCACATATATTAAT TCACTCCTTAGAAAACGCCTTTATCGTGACGCCACATTTGTTTTACAGCA TAAATCAAACGAAGTACCAACACTGGACAAGGTACTACTCAAAACTCTTA TTTCGCGACATTGATGCCCCCTTTGTCTACCAGCTTTCCTCCTCCACGCT CGCAACAATGAAAAGCCTTCACACCCATCCATCTAAGCGTATTTAGTACC ATAACTATACCGGGAAAACTACTCGAAATCGTACAATTACAACAGGTTTT CCACAAACTGATCACATAAAACCACGTGATATGTCGGGAAAAATGAACAA TGGCATCTCGGGTGGGCGGAACCGGTTCCCAGGTCGTTGTAACCAAAACG AAGAGAGGGTCTACTTTACTCTTCAATATAATAATACAACGCAAGCCTTC ATCTCGAGATATTCAAATAGTTTGTGTCTGCCCCATATTTCTTCCACACT TTTCCTGATACTCTCCTTCCCCGAGACCCTTAAAAAAAAGGCATGTTCAC AGGAGAATGTGTGCATGCACATATTGATAGTACCAAACTATTGTTGAGTG TGCGTAAACACCGTGCTTCCGCACGATGGCTCGTAAACCTGCAAGGGAAA CAGACTGACCGTTTTACACTTCGTTTCTTGCTCATGCGTCTCTGTTGGCA GGACGTTATTATTTGTGCTCTACCCCGGCGACGCACACAAGAACAAGATG ACGTCTTCGCGCCAACAATCTTCCATACTCAGTGTACATTTTCCTTGCGT CTTCTACGTTCTGCACTGCATTAG
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Coding sequence (CDS) from alignment at H-paniculata_contig2006:4066..6839-

>mRNA_H-paniculata_contig2006.5159.1 ID=mRNA_H-paniculata_contig2006.5159.1|Name=mRNA_H-paniculata_contig2006.5159.1|organism=Halopteris paniculata Hal_grac_a_UBK monoicous|type=CDS|length=1458bp|location=Sequence derived from alignment at H-paniculata_contig2006:4066..6839- (Halopteris paniculata Hal_grac_a_UBK monoicous)
GTGAAGGAAGGTGTCAACGTGTACCGCTTCGCTAACCGCATCCCGCTTTT
ATTCGAGGCTGGTAGCGACGTGGTCACGCGGGTAGCAATGAAGAGGATAA
AGTGAAGGAAGGTGTCAACGTGTACCGCTTCGCTAACCGCATCCCGCTTT
TATTCGAGGCTGGTAGCGACGTGGTCACGCGGGTAGCAATGAAGAGGATA
AACTGGAGCTCGTACAAGGTAGATCACAAGCGCGACAAAATTGGCGTTTT
CGTCTCCACCGTCAGCACCAAAATCCCCTTCAAGCTGGAGCTCGTACAAG
GTAGATCACAAGCGCGACAAAATTGGCGTTTTCGTCTCCACCGTCAGCAC
CAAAATCCCCTTCAAGGGCACCAGCAAGGAATACATCGGCGATGACACCG
AAGAGATAAAAAAGGCGGTGAAACACGCGCTTCAGCAGTGCTGCCAGCAG
CTTCGCGCGCATCTCGTCAGGAGAAACGCGCTCCGTGACCAACGGGAGAG
GAAGAAGGTTCTTACCAAAGGCACCAGCAAGGAATACATCGGCGATGACA
CCGAAGAGATAAAAAAGGCGGTGAAACACGCGCTTCAGCAGTGCTGCCAG
CAGCTTCGCGCGCATCTCGTCAGGAGAAACGCGCTCCGTGACCAACGGGA
GAGGAAGAAGGTTCTTACCAAATACATTCCCGACGTCAGCAGGGCGGTCT
TCGGACTGCTGACCGCTATGCAAAAGCGCGCTGCTGAGAGAGAGGAAGAT
GGCGTACCGCCGAAGAGGCCTAAATTCGCCGTGGGCGCCACCGCAAAGTA
CATTCCCGACGTCAGCAGGGCGGTCTTCGGACTGCTGACCGCTATGCAAA
AGCGCGCTGCTGAGAGAGAGGAAGATGGCGTACCGCCGAAGAGGCCTAAA
TTCGCCGTGGGCGCCACCGCAAAGAACCGGGTCATGGCAGCATTAAGCAC
CAACGACATCACAGAAAAGGTTCTTGCGTCTGGACTCAGCGCTGCAGTTG
ACCAGCACGACGCGGATGCAGTCAAAGAGGAGGGTAGCACAGTCGGGAGG
GGTAACCACGACCGACAGAACCGGGTCATGGCAGCATTAAGCACCAACGA
CATCACAGAAAAGGTTCTTGCGTCTGGACTCAGCGCTGCAGTTGACCAGC
ACGACGCGGATGCAGTCAAAGAGGAGGGTAGCACAGTCGGGAGGGGTAAC
CACGACCGACAGGACGTTATTATTTGTGCTCTACCCCGGCGACGCACACA
AGAACAAGATGACGTCTTCGCGCCAACAATCTTCCATACTCAGTGTACAT
TTTCCTTGCGTCTTCTACGTTCTGCACTGCATTAGGACGTTATTATTTGT
GCTCTACCCCGGCGACGCACACAAGAACAAGATGACGTCTTCGCGCCAAC
AATCTTCCATACTCAGTGTACATTTTCCTTGCGTCTTCTACGTTCTGCAC
TGCATTAG
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