mRNA_H-paniculata_contig20044.5154.1 (mRNA) Halopteris paniculata Hal_grac_a_UBK monoicous

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_H-paniculata_contig20044.5154.1
Unique NamemRNA_H-paniculata_contig20044.5154.1
TypemRNA
OrganismHalopteris paniculata Hal_grac_a_UBK monoicous (Halopteris paniculata Hal_grac_a_UBK monoicous)
Homology
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BLAST of mRNA_H-paniculata_contig20044.5154.1 vs. uniprot
Match: D7G753_ECTSI (Tetratricopeptide domain-containing protein n=1 Tax=Ectocarpus siliculosus TaxID=2880 RepID=D7G753_ECTSI)

HSP 1 Score: 199 bits (507), Expect = 1.020e-57
Identity = 143/250 (57.20%), Postives = 162/250 (64.80%), Query Frame = 1 
Query:   52 AESLGNLAVLLHGQTPKGAKVLDRIEDLYKRAVHADPANVNNVSNYGLFLAEIREDAVGAEXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXDGDYSEAKYLFERAVRASPADALTRADYGRFLALVESDMAGALENLREAMRCDPNCTTAQFNLGKLLLHQDR--PAQQGGLPKMSRVERATDVREAKGLLLRVLREKKGHPGANLCLARILVQEG 795
            AESLGNLAVLLHGQ    A +LD+IE LYKRAVHADP N NN SN+GLFLAE R D VGAE XXXXXXXXXXXXXXXXXXXX                                                EAK LFERAVR+SP+DALTRADYGRFLA+VE+++ GALENLREA+RCDP+CTTAQFNLGKLLL + R  PA +G    + R     D REAK LL +V+R+ + H GA LCLA  L +EG
Sbjct:  185 AESLGNLAVLLHGQLCTSAPLLDKIEGLYKRAVHADPVNANNFSNFGLFLAEKRGDVVGAEAXXXXXXXXXXXXXXXXXXXXVLLDSSLKQ--------------------------------------QEAKQLFERAVRSSPSDALTRADYGRFLAMVENNLEGALENLREAIRCDPDCTTAQFNLGKLLLQRRRTEPASEGS-GGIRRKAAGGDAREAKVLLRKVIRDNEEHSGAQLCLAHALAEEG 395
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BLAST of mRNA_H-paniculata_contig20044.5154.1 vs. uniprot
Match: A0A813CTF9_9DINO (TMTC1 protein n=1 Tax=Symbiodinium sp. KB8 TaxID=230985 RepID=A0A813CTF9_9DINO)

HSP 1 Score: 57.0 bits (136), Expect = 1.320e-5
Identity = 30/82 (36.59%), Postives = 49/82 (59.76%), Query Frame = 1 
Query:    4 QAKRLFEAAIAANPFHAESLGNLAVLLHGQTPKG------AKVLDRIEDLYKRAVHADPANVNNVSNYGLFLAEIREDAVGA 231
            + ++L++ A+A+ P + ++LG LAVLLHG   +        K LD  E  Y+ A+ +   + NN+ NYGLFL+++R D   A
Sbjct:  252 EVRKLYDRALASAPANPDTLGALAVLLHGSASQADSDADRTKQLDEAEAAYQAALESCSWHTNNLGNYGLFLSDVRGDNAAA 333
The following BLAST results are available for this feature:
BLAST of mRNA_H-paniculata_contig20044.5154.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 vs UniRef90)
Total hits: 2
Match NameE-valueIdentityDescription
D7G753_ECTSI1.020e-5757.20Tetratricopeptide domain-containing protein n=1 Ta... [more]
A0A813CTF9_9DINO1.320e-536.59TMTC1 protein n=1 Tax=Symbiodinium sp. KB8 TaxID=2... [more]
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Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
H-paniculata_contig20044contigH-paniculata_contig20044:225..3944 +
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 vs UniRef902022-09-19
OGS1.0 of Halopteris paniculata Hal_grac_a_UBK monoicous2021-02-24
Properties
Property NameValue
Taxonomic scopeEukaryota
Seed ortholog score201.8
Seed ortholog evalue4e-49
Seed eggNOG ortholog2880.D7G753
Hectar predicted targeting categoryother localisation
EggNOG free text desc.protein N-acetylglucosaminyltransferase activity
EggNOG OGsCOG3914@1,KOG4626@2759
COG Functional cat.O
Best tax levelEukaryota
Best eggNOG OGNA|NA|NA
Exons5
Model size807
Cds size807
Stop1
Start1
Relationships

The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_H-paniculata_contig20044.5154.1prot_H-paniculata_contig20044.5154.1Halopteris paniculata Hal_grac_a_UBK monoicouspolypeptideH-paniculata_contig20044 225..3944 +


The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1622929513.2259982-CDS-H-paniculata_contig20044:224..4311622929513.2259982-CDS-H-paniculata_contig20044:224..431Halopteris paniculata Hal_grac_a_UBK monoicousCDSH-paniculata_contig20044 225..431 +
1691480893.5268667-CDS-H-paniculata_contig20044:224..4311691480893.5268667-CDS-H-paniculata_contig20044:224..431Halopteris paniculata Hal_grac_a_UBK monoicousCDSH-paniculata_contig20044 225..431 +
1622929513.2370803-CDS-H-paniculata_contig20044:1132..12551622929513.2370803-CDS-H-paniculata_contig20044:1132..1255Halopteris paniculata Hal_grac_a_UBK monoicousCDSH-paniculata_contig20044 1133..1255 +
1691480893.5394642-CDS-H-paniculata_contig20044:1132..12551691480893.5394642-CDS-H-paniculata_contig20044:1132..1255Halopteris paniculata Hal_grac_a_UBK monoicousCDSH-paniculata_contig20044 1133..1255 +
1622929513.2485893-CDS-H-paniculata_contig20044:2296..24101622929513.2485893-CDS-H-paniculata_contig20044:2296..2410Halopteris paniculata Hal_grac_a_UBK monoicousCDSH-paniculata_contig20044 2297..2410 +
1691480893.5487006-CDS-H-paniculata_contig20044:2296..24101691480893.5487006-CDS-H-paniculata_contig20044:2296..2410Halopteris paniculata Hal_grac_a_UBK monoicousCDSH-paniculata_contig20044 2297..2410 +
1622929513.2619934-CDS-H-paniculata_contig20044:2670..28191622929513.2619934-CDS-H-paniculata_contig20044:2670..2819Halopteris paniculata Hal_grac_a_UBK monoicousCDSH-paniculata_contig20044 2671..2819 +
1691480893.557629-CDS-H-paniculata_contig20044:2670..28191691480893.557629-CDS-H-paniculata_contig20044:2670..2819Halopteris paniculata Hal_grac_a_UBK monoicousCDSH-paniculata_contig20044 2671..2819 +
1622929513.2760088-CDS-H-paniculata_contig20044:3730..39441622929513.2760088-CDS-H-paniculata_contig20044:3730..3944Halopteris paniculata Hal_grac_a_UBK monoicousCDSH-paniculata_contig20044 3731..3944 +
1691480893.567967-CDS-H-paniculata_contig20044:3730..39441691480893.567967-CDS-H-paniculata_contig20044:3730..3944Halopteris paniculata Hal_grac_a_UBK monoicousCDSH-paniculata_contig20044 3731..3944 +


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_H-paniculata_contig20044.5154.1

>prot_H-paniculata_contig20044.5154.1 ID=prot_H-paniculata_contig20044.5154.1|Name=mRNA_H-paniculata_contig20044.5154.1|organism=Halopteris paniculata Hal_grac_a_UBK monoicous|type=polypeptide|length=269bp
MQAKRLFEAAIAANPFHAESLGNLAVLLHGQTPKGAKVLDRIEDLYKRAV
HADPANVNNVSNYGLFLAEIREDAVGAEELYKKAADIDPFHANSIYNYAV
LLESSLQQHERAESLYRRCLEVNPEHSYALYNLAVLREEHTKDGDYSEAK
YLFERAVRASPADALTRADYGRFLALVESDMAGALENLREAMRCDPNCTT
AQFNLGKLLLHQDRPAQQGGLPKMSRVERATDVREAKGLLLRVLREKKGH
PGANLCLARILVQEGGVC*
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mRNA from alignment at H-paniculata_contig20044:225..3944+

Legend: polypeptideCDS
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_H-paniculata_contig20044.5154.1 ID=mRNA_H-paniculata_contig20044.5154.1|Name=mRNA_H-paniculata_contig20044.5154.1|organism=Halopteris paniculata Hal_grac_a_UBK monoicous|type=mRNA|length=3720bp|location=Sequence derived from alignment at H-paniculata_contig20044:225..3944+ (Halopteris paniculata Hal_grac_a_UBK monoicous)
ATGCAGGCTAAAAGATTGTTCGAGGCGGCCATAGCTGCCAACCCCTTTCA
CGCGGAAAGCTTGGGGAACCTCGCGGTGTTATTGCACGGACAGACGCCCA
AAGGAGCCAAAGTGCTGGACAGGATCGAGGACCTCTACAAGCGTGCCGTA
CACGCAGACCCCGCTAACGTCAACAACGTGTCGAACTACGGCTTGTTCCT
AGCCGAGGTATTAGCGACTACCAAGCTTGCCGTGCTAGCCCAGAAATCAA
CCGACGTGGTACTCCAAAAGAATACCATACATGATCAAATGTGACTCTTA
CTGTTTAGCTCATTTTATGATGTTTAGAGGAGTAAACGTGCACGCCAACA
TACATGAAAGCTTCGATCGGCGCCTTGGTTAGGTCTGGATTAACACGCGC
TACAGAGGCAACCGACCAATTGATAATATCCGTTTACACACACAAGGCGG
GGAAAGTGCAGTTTGTTCTTCGTAAAGAATCTTGAATCCGGGCGGCCAAG
CTCACCGGCCAGCAGAGACTAGGCCTTTTTCTCATGCTCCCATAAATTCC
GTGCGATAGTTGGAGCAATCTGCTTGTGCAAAAACTGATTACTCGGGATG
ACCAATACACCAACGACGAAATCTGGTTTGTCGGCGTAGCAACGCAAGGA
TGATGACCAACTAGCAGTAACTCTTACCAAACACAGCCTGGATGACGAAA
CCCAGCATAGCCCCGTCCTCGCAGTGTAAGTATCCGAGGCCAAAGGTCCC
TAACTACGACACGCATTGCCATAAGTAGAAAGGGGTGTTTAGACGACACT
TCGTCCCCCGCCCCAGTTGAATGCGCTCCACTTCGGGCGTTGATGATGGG
TTTCCTGCCTCCCTGCCGCTGTGCGGATCGCACATTGGTATGTTCGCTCG
AAAACTAGATTCGTGAGGATGCTGTGGGAGCGGAGGAGCTTTACAAGAAG
GCTGCCGACATAGACCCATTTCACGCAAACTCCATCTACAACTACGCCGT
CCTGCTTGAAAGCAGCCTTCAACAACACGAGGTATATACGGCAGACTGGA
TGCATCAACTGAAGACGAATTTGTCATTAATTTGCACGGAGCTTAACAGT
TTTTCATATATTCCTGGAGATCTTCCCCCCTTGGCACCCCACACCCGATT
AACTACTTCAAGTATTTTGGATCCAACATCAGGGTGGGTCAGCAGTCATC
CATCGTTCGTTCGGTGTTGGCTCTCGTCGACGGACATGCTTGTGACTGAC
AGTGCTGCTTTATGTGATGATCGTTCAGCTTGCTCTTGCATTTTGTACCC
AGGGCTTGGCTTGGAGTACTTAGGATAGATGTGTGCGGAACGTGGGCTAA
CAAGCAGAATCTCATCAATATTTTTCCCACCTAATATTCGAATCTGCGGT
ACGACATAATATATCCTCAAGGGGACATAATCTCTTTCAATTTGTCAAGT
GTCCATACCTTGCTCGACAATACCTCCATATTTATGCATACTTCCCCTGT
GCCGTGAGTAAATTCGGTGAAGTTTATAGAGGTGCGTAACCATCTCCTAT
TTTTTTCGTTATAACCCTACATATTACACCGAAATTAGCGAAATCCATCG
GGAGCGCGCGCGGCGCAAAACTGATGTCGGCCGAAATAGGCCCATATTGT
GCCCCTTTTGTATTTTCCCAACGAAATAACGTGACAATCGAAAAATATGA
AAATCTGTCAGAAAGAGCCCAACATTGACCGCTCATTAATTCTGATGCAC
AAATCGGAAAGCAGTTTTTGCAATAGGGCATATGAGTCTGTCAGATTTCA
GTTTTTCGACGATTTCAACTGCAGCTTCTGAACAGTCTTAGATCTGGAGA
TACTATCTGCCAAATATAACCGATTTTACTTATGGCCCAGAGGAATAATA
TATATGTATTAGCTGGATTTCCTCCATTTGATGACTCAGATATTGTCATC
CGCAAATCACAAAAATGTTAAAGTGGAAGACCGTGAACTAAACTAATTGT
ACTGCATTTTCCCGATAAGCTTAGCCTACATGAACTAATGCTATCTCCAC
CACCCCAATCTCCACTTTTCAGCGAGCTGAGTCCTTGTACCGTCGGTGTC
TCGAGGTGAACCCCGAGCATAGCTATGCCCTCTACAATCTAGCCGTGTTG
AGGGAGGAGCACACGAAGGACGGGGACTACTCAGAGGTACATGGCGTACG
TGATATTGACTTAATATTCTTCAGGGCATAAATATACAGGATCATAGCAT
GGCGGGCGGACTGCTGGCGTAGATAAACCAGGCGTTTATGTGGATTCAAG
GCACATAGAGCCAGATTCGTTCAGGGCAGGAACATAGGCGCTGTTGAAGA
GGTACTTATTGATATATTTCCAGTCTAAAGACGAAAATGATCTATTCTAG
ATTTCATGAAGTTATCTGCGATCCATGTTGCTGTCGGAATTCGTAGGCAA
AGTACTTGTTCGAGCGTGCGGTGCGAGCCAGCCCTGCGGACGCCTTAACT
CGTGCCGACTACGGACGTTTCCTTGCCCTTGTCGAGAGCGACATGGCTGG
CGCGCTCGAAAACTTGAGGGAGGCCATGCGTTGCGACCCGAATTGGTAAG
AAAAGCAACATGGAGAAGAGATGCAGACCATGATCAGGTTACATGCACCC
AAATTCATGAAATAAAGCAAACTCGAGTAGATCTAGAGACTAAATGGTCA
TTATGCTTGGGTTGCGGCTATGCCCTACGGCGCTTGGGGGCTCAGTTACC
AGGTAAAACGTTGTATACTTACAAGTATTTTTAATTTGTATAAACACCTA
AAGACTTTGAAGGGTAACGGGTTTGTGCAAAACATTATCTGCTAGCGCTG
ATGGGTGGATTGACGACAAAAGGGTGGAAACATTCGACTTTTATTTGTAT
TCAGCAGGTGGAAGTATCGTTGCTGATTGAGCCATCATGATACATTCACG
AAGAGGCCGCCTCTCGTTTGGTATTCTATGTATATATATATATATATATT
ATATATATATCATTAGCTGCCTCCCAACAATGCACGAACTCTCATATGGC
GTCATGCAAACGGCCAAACTGATCTCAATCCCTAGATAGTGTGAGTGACG
CAGAGGCTACTTGTCACCCCCCCCTCCCCCGCCGACGTTATCCACACGCG
AATTCTACGATAGTCATTATCCGTAATCAGGACCAATGTTTGTTTTTAGG
GTGAGTCTCTCCACAACAACAAAGGCATTAGTCACCCAGTTGACCTAATT
GATGCCATAGGAAACGATGGGTGACGCTCGTGAGCACAGACAGACATTAA
GAACCTTTGTGTACTGCGAAATACAAAGGATTATAGCCTCCTCGTTGCGC
GCGGTAAAAAAGCAGTACCGGCTTCTTAGTCCCCCCTGTCTATTGGATGC
GCGACGGTAGCTCCCATAGAGCTCATCATCGATCGGGAATGTGTCATGGT
GCCTTGCTCTGTACACATATTTTCATCTATGCACTTATTATATATGTACC
AAGCAGCACGACGGCCCAATTCAACCTCGGAAAGTTGCTTTTGCACCAAG
ATCGTCCAGCCCAACAAGGCGGTTTGCCAAAGATGTCGCGGGTAGAGCGA
GCCACGGACGTACGTGAGGCCAAGGGTTTACTGCTTCGAGTGCTCCGAGA
AAAGAAGGGGCATCCCGGGGCTAACCTGTGCCTTGCGCGGATTCTCGTGC
AGGAAGGAGGTGTGTGTTGA
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Coding sequence (CDS) from alignment at H-paniculata_contig20044:225..3944+

>mRNA_H-paniculata_contig20044.5154.1 ID=mRNA_H-paniculata_contig20044.5154.1|Name=mRNA_H-paniculata_contig20044.5154.1|organism=Halopteris paniculata Hal_grac_a_UBK monoicous|type=CDS|length=1614bp|location=Sequence derived from alignment at H-paniculata_contig20044:225..3944+ (Halopteris paniculata Hal_grac_a_UBK monoicous)
ATGCAGGCTAAAAGATTGTTCGAGGCGGCCATAGCTGCCAACCCCTTTCA
CGCGGAAAGCTTGGGGAACCTCGCGGTGTTATTGCACGGACAGACGCCCA
AAGGAGCCAAAGTGCTGGACAGGATCGAGGACCTCTACAAGCGTGCCGTA
CACGCAGACCCCGCTAACGTCAACAACGTGTCGAACTACGGCTTGTTCCT
AGCCGAGATGCAGGCTAAAAGATTGTTCGAGGCGGCCATAGCTGCCAACC
CCTTTCACGCGGAAAGCTTGGGGAACCTCGCGGTGTTATTGCACGGACAG
ACGCCCAAAGGAGCCAAAGTGCTGGACAGGATCGAGGACCTCTACAAGCG
TGCCGTACACGCAGACCCCGCTAACGTCAACAACGTGTCGAACTACGGCT
TGTTCCTAGCCGAGATTCGTGAGGATGCTGTGGGAGCGGAGGAGCTTTAC
AAGAAGGCTGCCGACATAGACCCATTTCACGCAAACTCCATCTACAACTA
CGCCGTCCTGCTTGAAAGCAGCCTTCAACAACACGAGATTCGTGAGGATG
CTGTGGGAGCGGAGGAGCTTTACAAGAAGGCTGCCGACATAGACCCATTT
CACGCAAACTCCATCTACAACTACGCCGTCCTGCTTGAAAGCAGCCTTCA
ACAACACGAGCGAGCTGAGTCCTTGTACCGTCGGTGTCTCGAGGTGAACC
CCGAGCATAGCTATGCCCTCTACAATCTAGCCGTGTTGAGGGAGGAGCAC
ACGAAGGACGGGGACTACTCAGAGCGAGCTGAGTCCTTGTACCGTCGGTG
TCTCGAGGTGAACCCCGAGCATAGCTATGCCCTCTACAATCTAGCCGTGT
TGAGGGAGGAGCACACGAAGGACGGGGACTACTCAGAGGCAAAGTACTTG
TTCGAGCGTGCGGTGCGAGCCAGCCCTGCGGACGCCTTAACTCGTGCCGA
CTACGGACGTTTCCTTGCCCTTGTCGAGAGCGACATGGCTGGCGCGCTCG
AAAACTTGAGGGAGGCCATGCGTTGCGACCCGAATTGGCAAAGTACTTGT
TCGAGCGTGCGGTGCGAGCCAGCCCTGCGGACGCCTTAACTCGTGCCGAC
TACGGACGTTTCCTTGCCCTTGTCGAGAGCGACATGGCTGGCGCGCTCGA
AAACTTGAGGGAGGCCATGCGTTGCGACCCGAATTGCACGACGGCCCAAT
TCAACCTCGGAAAGTTGCTTTTGCACCAAGATCGTCCAGCCCAACAAGGC
GGTTTGCCAAAGATGTCGCGGGTAGAGCGAGCCACGGACGTACGTGAGGC
CAAGGGTTTACTGCTTCGAGTGCTCCGAGAAAAGAAGGGGCATCCCGGGG
CTAACCTGTGCCTTGCGCGGATTCTCGTGCAGGAAGGAGGTGTGTGTTGA
CACGACGGCCCAATTCAACCTCGGAAAGTTGCTTTTGCACCAAGATCGTC
CAGCCCAACAAGGCGGTTTGCCAAAGATGTCGCGGGTAGAGCGAGCCACG
GACGTACGTGAGGCCAAGGGTTTACTGCTTCGAGTGCTCCGAGAAAAGAA
GGGGCATCCCGGGGCTAACCTGTGCCTTGCGCGGATTCTCGTGCAGGAAG
GAGGTGTGTGTTGA
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