prot_H-paniculata_contig20.5128.1 (polypeptide) Halopteris paniculata Hal_grac_a_UBK monoicous

You are viewing a polypeptide, more information available on the corresponding mRNA page

Overview
NamemRNA_H-paniculata_contig20.5128.1
Unique Nameprot_H-paniculata_contig20.5128.1
Typepolypeptide
OrganismHalopteris paniculata Hal_grac_a_UBK monoicous (Halopteris paniculata Hal_grac_a_UBK monoicous)
Sequence length270
Homology
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BLAST of mRNA_H-paniculata_contig20.5128.1 vs. uniprot
Match: D7G5A2_ECTSI (Probable chromatin remodelling complex ATPase chain n=2 Tax=Ectocarpus TaxID=2879 RepID=D7G5A2_ECTSI)

HSP 1 Score: 198 bits (504), Expect = 3.860e-54
Identity = 144/274 (52.55%), Postives = 168/274 (61.31%), Query Frame = 0 
Query:    1 MDKSPRT-------RTP-KVVGKPGLLVPVSLFPELARDIEDGGLTSKEEMLQTFQRKHPSFTQVSISKAVSSLGEKVSRGATWKLLDGAKKYLSMPVTDRPVPEEVAVMAAMSAKRKGSGSPNGHSSKKAKKI---KEEITSRTPITNFFQPKNADENGAPNANGTSAGDDGESGTGTTLASXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXSGDCENIKRGFVNFCRANRTKVQAEVKSGS-KSDTADRLLFLWGQLSVKDMEKWDKGVLP 262
            +DKSP         RTP K VGKPGL VP +LFPEL R IE G LTSK++MLQ FQ+KHP+FTQVSI+KA+  LGEK SRG+ WK+LD  KKYLSMPV    VPEEVAV++A+SAKRK  GS   HS+KK K     K    S++PITNFF PK +   GA +A                               XXXXXXXXXXXXX      +        GFV FCRANRT+VQAE+  GS K+DTADRLL LWG+L  K  E+W  G LP
Sbjct: 1325 VDKSPANSSGTKAKRTPTKSVGKPGLEVPKTLFPELVRLIEKGELTSKDDMLQIFQKKHPAFTQVSINKAIGVLGEKASRGSKWKVLDAGKKYLSMPVYQGNVPEEVAVLSALSAKRKSGGS-ESHSAKKRKSTTPSKANGESKSPITNFFPPKTS---GAADA-------------------------------XXXXXXXXXXXXXKAPAPAAPKSPGPSPGFVAFCRANRTRVQAELPIGSSKADTADRLLQLWGELDDKVAERWTSGALP 1563
The following BLAST results are available for this feature:
BLAST of mRNA_H-paniculata_contig20.5128.1 vs. uniprot
Analysis Date: 2022-09-16 (Diamond blastp: OGS1.0 vs UniRef90)
Total hits: 1
Match NameE-valueIdentityDescription
D7G5A2_ECTSI3.860e-5452.55Probable chromatin remodelling complex ATPase chai... [more]
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Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
H-paniculata_contig20contigH-paniculata_contig20:65502..69738 -
Analyses
This polypeptide is derived from or has results from the following analyses
Analysis NameDate Performed
InterProScan on OGS1.02022-09-29
Diamond blastp: OGS1.0 vs UniRef902022-09-16
OGS1.0 of Halopteris paniculata Hal_grac_a_UBK monoicous2021-02-24
Relationships

This polypeptide derives from the following mRNA feature(s):

Feature NameUnique NameSpeciesTypePosition
mRNA_H-paniculata_contig20.5128.1mRNA_H-paniculata_contig20.5128.1Halopteris paniculata Hal_grac_a_UBK monoicousmRNAH-paniculata_contig20 63707..69785 -


Sequences
The following sequences are available for this feature:

polypeptide sequence

>prot_H-paniculata_contig20.5128.1 ID=prot_H-paniculata_contig20.5128.1|Name=mRNA_H-paniculata_contig20.5128.1|organism=Halopteris paniculata Hal_grac_a_UBK monoicous|type=polypeptide|length=270bp
MDKSPRTRTPKVVGKPGLLVPVSLFPELARDIEDGGLTSKEEMLQTFQRK
HPSFTQVSISKAVSSLGEKVSRGATWKLLDGAKKYLSMPVTDRPVPEEVA
VMAAMSAKRKGSGSPNGHSSKKAKKIKEEITSRTPITNFFQPKNADENGA
PNANGTSAGDDGESGTGTTLASSSSKKRKTHGKSSSQDGGARASSGGGGG
GGSSGDCENIKRGFVNFCRANRTKVQAEVKSGSKSDTADRLLFLWGQLSV
KDMEKWDKGVLPAVGSARG*
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