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Homology
BLAST of mRNA_H-paniculata_contig20.5128.1 vs. uniprot
Match: D7G5A2_ECTSI (Probable chromatin remodelling complex ATPase chain n=2 Tax=Ectocarpus TaxID=2879 RepID=D7G5A2_ECTSI) HSP 1 Score: 201 bits (510), Expect = 2.700e-49 Identity = 145/278 (52.16%), Postives = 171/278 (61.51%), Query Frame = 3
Query: 36 TASGMDKSPRT-------RTP-KVVGKPGLLVPVSLFPELARDIEDGGLTSKEEMLQTFQRKHPSFTQVSISKAVSSLGEKVSRGATWKLLDGAKKYLSMPVTDRPVPEEVAVMAAMSAKRKGSGSPNGHSSKKAKKI---KEEITSRTPITNFFQPKNADENGAPNANGTSAGDDGESGTGTTLASXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXSGDCENIKRGFVNFCRANRTKVQAEVKSGS-KSDTADRLLFLWGQLSVKDMEKWDKGVLP 833
T++ +DKSP RTP K VGKPGL VP +LFPEL R IE G LTSK++MLQ FQ+KHP+FTQVSI+KA+ LGEK SRG+ WK+LD KKYLSMPV VPEEVAV++A+SAKRK GS HS+KK K K S++PITNFF PK + GA +A XXXXXXXXXXXXX + GFV FCRANRT+VQAE+ GS K+DTADRLL LWG+L K E+W G LP
Sbjct: 1321 TSNAVDKSPANSSGTKAKRTPTKSVGKPGLEVPKTLFPELVRLIEKGELTSKDDMLQIFQKKHPAFTQVSINKAIGVLGEKASRGSKWKVLDAGKKYLSMPVYQGNVPEEVAVLSALSAKRKSGGS-ESHSAKKRKSTTPSKANGESKSPITNFFPPKTS---GAADA-------------------------------XXXXXXXXXXXXXKAPAPAAPKSPGPSPGFVAFCRANRTRVQAELPIGSSKADTADRLLQLWGELDDKVAERWTSGALP 1563
The following BLAST results are available for this feature:
Alignments
The following features are aligned
Analyses
This mRNA is derived from or has results from the following analyses
Properties
| Property Name | Value |
|---|
| Taxonomic scope | Eukaryota |
| Seed ortholog score | 200.3 |
| Seed ortholog evalue | 1.2e-48 |
| Seed eggNOG ortholog | 2880.D7G5A2 |
| KEGG ko | ko:K11654 |
| Hectar predicted targeting category | other localisation |
| EggNOG free text desc. | helicase activity |
| EggNOG OGs | COG0553@1,KOG0385@2759 |
| COG Functional cat. | KL |
| Best tax level | Eukaryota |
| Best eggNOG OG | NA|NA|NA |
| BRITE | ko00000,ko01000,ko03021,ko03036 |
| Exons | 6 |
| Model size | 2652 |
| Cds size | 810 |
| Stop | 1 |
| Start | 1 |
Relationships
The following polypeptide feature(s) derives from this mRNA:
The following UTR feature(s) are a part of this mRNA:
The following CDS feature(s) are a part of this mRNA:
Sequences
The following sequences are available for this feature:
protein sequence of mRNA_H-paniculata_contig20.5128.1 >prot_H-paniculata_contig20.5128.1 ID=prot_H-paniculata_contig20.5128.1|Name=mRNA_H-paniculata_contig20.5128.1|organism=Halopteris paniculata Hal_grac_a_UBK monoicous|type=polypeptide|length=270bp
MDKSPRTRTPKVVGKPGLLVPVSLFPELARDIEDGGLTSKEEMLQTFQRK
HPSFTQVSISKAVSSLGEKVSRGATWKLLDGAKKYLSMPVTDRPVPEEVA
VMAAMSAKRKGSGSPNGHSSKKAKKIKEEITSRTPITNFFQPKNADENGA
PNANGTSAGDDGESGTGTTLASSSSKKRKTHGKSSSQDGGARASSGGGGG
GGSSGDCENIKRGFVNFCRANRTKVQAEVKSGSKSDTADRLLFLWGQLSV
KDMEKWDKGVLPAVGSARG* back to topmRNA from alignment at H-paniculata_contig20:63707..69785- Legend: UTRpolypeptideCDS Hold the cursor over a type above to highlight its positions in the sequence below. >mRNA_H-paniculata_contig20.5128.1 ID=mRNA_H-paniculata_contig20.5128.1|Name=mRNA_H-paniculata_contig20.5128.1|organism=Halopteris paniculata Hal_grac_a_UBK monoicous|type=mRNA|length=6079bp|location=Sequence derived from alignment at H-paniculata_contig20:63707..69785- (Halopteris paniculata Hal_grac_a_UBK monoicous)
AGGAGCGGAGGAAGTCGGACGGGGGAGGGGGAGGGACGGCAAGTGGTATG
GACAAGAGTCCTCGGACGAGGACTCCGAAGGTTGTGGGCAAGCCGGGCCT
TCTCGTGCCTGTGTCGTTGTTTCCTGAACTGGCGCGGGATATTGAGGACG
GAGGTGAGGGGGTCTTGTTTGTGTGTGTGTTTCTGAGTCGTAGATGATCG
CTTCTTGGAGTTAGTTTCTCCCAGTCCTCAATTTCTCTTCTGTTCGTTTT
GTTGGGTTTGAGGTTTCATGGGCAGTTTTTGTGGTGATTAGTGTGTATAT
TTTTCAATGCACATGTCAGGTACTCCTCCCTTTGTCAAAATGGCTGCTGT
CATCAAAATACGATATCCGCTCGAGTGCATTTTTGGCTACAGTCTTCGTC
TGATTTATTATTGTTGACCGTGTTTTTTAACGGTATGCGTGTGTGTGTGA
TCCGCTTTATGCCCTGAGCATGCGTCGAAGTTCTACAAGAACTTTCTCAC
CTTCCTCTCGTAATGTGCAGTCGTCCGATGACCCCTCGTGGTACCTGCAC
TGATAGTGCTATCTTTGTACCACTTTCTGTGCACGCACGCTTATTTCCTT
GGACTTGAAAAAAAGATAGGTAGGTATTATTTATTTAATGCTGAATATGA
AAACACGGTATTCCCACTGGAGAGTGATTCCTGTGGGCACTGCTGTACTT
CAGGTTCTGGCATTAAGCCGGGGTTCAAGGATGTTGGTGTGGTACGAACA
CACGCCGTTTGCTCTCTACGGGGAGTTGTCCCAAAGGAGTGGTCCTCCGC
GAGGGTCGGAGAAAGTAAAACGCTGTTCCGAATATGCGGCAGAAATGCCG
CTGGATTCGGGAATTTCAGGAACTTGACGAACGTGCTGTCCACGAACACT
CTGTAGTAAAACTGCCGAAACATGCTCCAACCGTCTTGAACGAACGCTTA
TACGTGTTTCTTCTTTTTTTTCTTTTGAGCAATGTTTCAATTATTGGTTT
GCTCGCTGTTGTTCTTGAATACTTACCGCTTACCGCTTACGGCTTCTCCG
CAATCCGTTACGGGTTGGGTTGCATTCATTGTGTATCTTGCGTATCTTGT
GCTTCTTGTGTCGCTCGCAGGACTGACGTCTAAGGAAGAAATGCTGCAGA
CCTTTCAGAGGAAGCATCCGTCGTTCACGCAGGTGTCGATCAGCAAAGCC
GTCAGGTCAGTCGGCATGCGATACGCTTACGCCGTGTCGCCCACCCTGGT
CGCTCTACAAGGCGAACAAGCAGTTGCCCCACCTTTAGCGCGCCTCTCCC
CCCCCCCATTACGTTGTGTGCCGGGTCCTGCTCCTACCTCTCTCTGTCTT
AGTGGGTTTTATTTGTTCACACTGCCCCCTAACACGGTCCAATGCTGACG
TTAGAAGAGCCGGCGCTCAACGAAGGGAGAACATGAATGCCCTCACTCAC
ATAGATCCACACATTGCTGACGCTGTGCAACTCGTCCGTAGAGTGCGCGC
AATCTTCCTTCTTACCTAAAACGTTGTGTATTTTTTAACTTGCCAGTTCC
CGAAATCAAGAGCTACTTACTTTACTGTCGGTATGTCGGCATGTGGCTTG
TTGTATATAAAAAGTATTGCATTTTTTTTTTGGAAAAATAATCAAGCTTT
GTCCCCCGAACCGTCGTTCACGACACGTATCTGTATCGTAACACCAAAAC
TGTTCGTGCTGTTGGCTTTGCCCTTTTTTCTCTCTTTTTTTTTTCTCTCT
TTTTTTGTTTTGTGTTATTACCTGTTCCGCCTGTATTGCAGCTCGCTCGG
AGAAAAGGTTTCTCGCGGCGCGACGTGGAAATTATTGGACGGCGCCAAGA
AATACTTGTCTATGCCCGTGACCGATCGGCCCGTGCCGGAGGAGGTCCGT
CCTGTTTCAGTTCAAATTATGATAGTAGCGCTATGTCGATTTTTGTATTT
TCGGTATGCCTCTTGGCTAAGGTGATACTACCTCCATTGATTTCAATAGT
ATCTTTTCCGGGTCGTACCGACCTGTGGAGGATCTTTTGCCTACGGCATT
ATTTTTCGCGGAAATGCACCGTCGGCAATCCTTTTGTGTGTGTGCGCGTG
CTTTTTTCTTGTAAAGTTTGTATTTCACGATGAGCTCATGACTGACTTGC
TTCTGTGATGTATGCACGTTGGTGTGGTGTAGAGCTACTTGTTACACATC
CAGGGCTGCTATGTAGTATCATAGTTTTTCTTTCTGACGACGCAACTGAA
ATGTACGAAGCGAATGTACCCTTGTATATCCAGTTATGATGTAGAGATAG
CTTGAGAAAATGAGCAATAATACAAAGAACATGCCGTGACGGTCTCGCCT
ATTTTTTCTGACGGTACGGTATGGTGCAGGTGGCGGTAATGGCGGCGATG
TCTGCGAAGCGGAAGGGCAGCGGGTCGCCCAATGGACATTCGAGCAAGAA
GGCTAAAAAGGTTTGTTGTAGCTGTACATCACATAGCTGTAGAGTTCTTC
ACGTCAGGCTTGGTATGGGCGCACAGGCAAAGGTAGCGTTGTAGGCAAAT
ACGCGTGGACAAATTAGCTTCAGAGCTAGTACGGGCAAGTGGAGAGTAGC
AACTCTGTACAACGTACGCTTTGACATTATATGGGCTGCTACAGCTAGTA
AATCCGTATGCTTTTCTGAATGGTTTTGGGAAACGGCACCGGGGCAAATG
TGGGCATTGAGCGGTAATGGCTCCCCCTGTGTGTTTCCGTCTGCGCAGCC
ACCTATGAGCTTGGTGATCTGCTAAGAACCCAAAAGCAGGACATGGAAGA
AAAACCATTCATCAGAAGCTTTGTGTTGCCGCCGAGTCACCTGTTGTGTT
TGCCTCAGCTGGGAACGACGCTGTTACACAGCGTGTCGTCCAGTTGACTC
TGCCCTACTCCTGTCCGTGGCTATTTCTCTGTGTTTATCTACAGCGCTGC
TGTTGGTACGCACTCTTGGATGATGCGTTTCGTATCGGTGCACTTTTCAT
CACCTCGGCCCCTTTCGGTTAGGTGGTTTGGACAATATGTTGTGGAGGAA
CACTGTCTGTTTACTGTTGGTAATACCGTCAGGTCGTTGTCGTCGTCGTC
AATTCCGGAACACTTGCTGAACTCTGTACTGAGAGTAACTTCTACGAACG
AACGAACCTTGATGTCCATTATGTCCATGGATTATTTACGAGCGAAGCTG
CGCGTGGGTGAAGCAAGGACAAAGCTTGCAGATTCCGCGGGCATAGCCAT
GGGTCCAGCTGCACCGGGTGAATGGACGTCGCAACCTTTTGTCCAAAAGC
ATGTGCATGGTTGGTTTCGAGACTTGTTGGTGTTGCTCATGAATATCCCC
CAAGTTGCCCACGTACTGTAGGAGTAATTATTCAACAGGTAGTACGATAA
GCCACTTTCAAACGGTATTCCTAACTCCCCCCCCCCCCCCTCCCCCCTCC
CCGCGGATGCGCCACCTGTCATCCGTTGACCATTCCATTTTGATGGTATT
TATTTGCGATTGTATTGTCGCTGTCCATGACGCCTGCCAAGATCAAGGAG
GAGATCACTAGCAGGACCCCCATCACCAACTTCTTCCAGCCGAAGAATGC
CGACGAAAACGGCGCGCCAAATGCCAACGGCACGAGCGCTGGTGATGATG
GTGAGAGCGGTACCGGCACTACCCTAGCTTCTTCCTCCTCCAAGAAACGG
AAGACGCATGGTAAGAGCTCGTCTCAAGATGGAGGAGCACGGGCAAGTTC
GGGTGGCGGCGGTGGCGGCGGCAGCAGCGGCGATTGTGAGAATATCAAGC
GGGGGTTTGTCAACTTTTGTCGGGCCAATCGAACGAAGGTGAGAAGAGAG
AGAGAGAGAGAGAGAGAGACGAAGTAATTTGTGCTAAGTGTGTGTGTTCG
TTTGTTTGTTTTTTGCTGTGTTTAGTATCTCGACTTCTTGGACCAATGAT
GATGAGATCATGATGGTAGTGGAAATGGAGGTCATGACCTTCCTATCCGA
TCGGTTTTCCATTCTTCATCCAAGTGTTTGTTTCTGAGTGTCGTGCTACT
TGCTCGTACTGTAGCTGTGGCGAGCCTATTATTTAAGTGGATAATGTTGA
GGTGGATTTTGCCCGTTTCTTGTTATTTTTTACCCTGGGGGGTTAGGTGC
AAGCGGAGGTGAAGAGTGGGAGCAAATCGGACACAGCAGATCGCCTTCTC
TTCTTGTGGGGACAGCTGAGTGTGAAAGATATGGAGAAGTGGGACAAAGG
CGTGTTGCCGGCAGTAGGCAGCGCACGCGGATGAGCCACCGTGCAACCAG
AGAATGGGCCCGTAATCCTCCTGGCCTGCCCTCCAGCATCCGGCAGTATT
AACAGTGCTGACGTAAATTCAGGATGATCGGATCTAAATGGGTCGTGGGT
TTGCATGGCGTGGCAGCTTCTCTAGGCTAGGCCAAGTCAAACCTGTACGA
TACTTAGAGCTGAGATGTTTCTGAAGGGTACTGGGTCTAGCGCGAAATGT
TGTTACTAGTTTACAAAAAATATGAGCACGGGCGATTGATTGATACAATA
GGTTGTTGCTCGAAACGGCTAACAAAGAGGGTAAGAGGTGGAGAGGGAGC
GATGAACACGCGACACTCCCATCATACTTCTAATAAACTGTGGAGGGCAA
ATGTACTATTCGTGTATTTCTGCCATGTTAGGTTTGTACAGATGCCCAAC
AATCTCCTAACAACAGCCGTATATCCAGCTGCGCCTTGTGTCCAGTACGT
TGTGTGTGTATGTCTGGTACGCTTTCATGCCATTTTTCACCTTTCGGTCG
AAGTAGTACATTTTTTTATGGATGGCAGAAGCAAAACAAAATGTGTTTGC
CCAATTTACGTCAGTTTTCATGGTACTTGGAGCTGTGGTGTGGAACGGAC
GGGCGCACCCGTTCCTCGTGGAGCTAAGTAGTTTTGTAGCTGAGAAGCGT
GCGTTGTGCACCGTGCATGGGTCGCGTCTCAAGAATGACCGAGATCGACA
GGAAAATAGAGTGTTTTTCTTTTTTCTTCTTTTGAAAAACGGCAAGACTT
TCGGTCAAGAAGCAGTCAGTTGGCACAGAAAAAACACCCGCACCACCAGC
GCAGCAGTATATTGTGTTGAGTAGACTAGACTGTAAAAGCGGTTGTTGTT
ATCCATGATATCTTTTTCTTCTTCTTTTTTTTTTTTTTTTTTTGCTCGTT
CTCTCGTTTTTTCGTCGAATCGGAAATGGATAGTCAGTGAGTGCGGCTTC
CCCTCATTTTTGTACACTGGGGGGAAAGAAGAGAGTTCGATTTGCTTCAG
GCCCATATTTTATTGCAGTAGTTGGCCGCGAGAAAACCGCCATTTAAAAT
CGACCACAAAAGTGTTTTGTATGTGTGTGTGTGTGTGTGTGCGCGTGTGT
GTTGGGTGTAATGCATCTCTCAATCTATCTGTTTCTATCATCTGAGGAAG
AGTGGGTGTAGGGTGGGTCGCCCTCGCTGTTTTCGTTGTTGTGCACAAGT
TGCTCGTCTGGTGCTATTTTTCAGTTATATTGCGACAACTCTCAGGTACG
TAGTGGGCCGTATTCACGCCCCCATAGACGTCATCTTGTCCCCCGTTCTC
AACCATTAGACGAGGAGGGACGGACGTTGTGTGAGTAGTCGTAGTTCGGT
TATGGTGGAGGAAGCAGGATGATGGGTCGCGACCATATGGCGTTGTTGGT
GTACGTCGTCAACGAAATGGACATATGTGTTGAAGAAGGCTGGATAGCGG
GAGTATGTGTTGTTAGTTGGTGTCCCCCTTTTTTTTTTTTTACAGCGAGC
GGAATGATTGATGGTGATGGTGGTTGTGGTGGTGGGAGATTTACCGAGAG
TTTGATGAATTGTGGTTTTGGCAAGGTTTTGGCGGGGTATTTGTACAAGT
ATAATAGCTCATGTACACCGTGTATGCGAAAAAAAACGGTTATCATGTTC
GATCCGCTTTCCGGGCCTTGGTATCACGAAGGCAGAGAGAAAGAAAAGGA
GAACGCACGGTGCGCAAGCAAATAAAAGAATTATCATGGGGTGACGATAC
TTGAACGCAAGGTTGGTACCCGTAGAATG back to topCoding sequence (CDS) from alignment at H-paniculata_contig20:63707..69785- >mRNA_H-paniculata_contig20.5128.1 ID=mRNA_H-paniculata_contig20.5128.1|Name=mRNA_H-paniculata_contig20.5128.1|organism=Halopteris paniculata Hal_grac_a_UBK monoicous|type=CDS|length=1620bp|location=Sequence derived from alignment at H-paniculata_contig20:63707..69785- (Halopteris paniculata Hal_grac_a_UBK monoicous)
ATGGACAAGAGTCCTCGGACGAGGACTCCGAAGGTTGTGGGCAAGCCGGG
CCTTCTCGTGCCTGTGTCGTTGTTTCCTGAACTGGCGCGGGATATTGAGG
ACGGAGATGGACAAGAGTCCTCGGACGAGGACTCCGAAGGTTGTGGGCAA
GCCGGGCCTTCTCGTGCCTGTGTCGTTGTTTCCTGAACTGGCGCGGGATA
TTGAGGACGGAGGACTGACGTCTAAGGAAGAAATGCTGCAGACCTTTCAG
AGGAAGCATCCGTCGTTCACGCAGGTGTCGATCAGCAAAGCCGTCAGGAC
TGACGTCTAAGGAAGAAATGCTGCAGACCTTTCAGAGGAAGCATCCGTCG
TTCACGCAGGTGTCGATCAGCAAAGCCGTCAGCTCGCTCGGAGAAAAGGT
TTCTCGCGGCGCGACGTGGAAATTATTGGACGGCGCCAAGAAATACTTGT
CTATGCCCGTGACCGATCGGCCCGTGCCGGAGGAGCTCGCTCGGAGAAAA
GGTTTCTCGCGGCGCGACGTGGAAATTATTGGACGGCGCCAAGAAATACT
TGTCTATGCCCGTGACCGATCGGCCCGTGCCGGAGGAGGTGGCGGTAATG
GCGGCGATGTCTGCGAAGCGGAAGGGCAGCGGGTCGCCCAATGGACATTC
GAGCAAGAAGGCTAAAAAGGTGGCGGTAATGGCGGCGATGTCTGCGAAGC
GGAAGGGCAGCGGGTCGCCCAATGGACATTCGAGCAAGAAGGCTAAAAAG
ATCAAGGAGGAGATCACTAGCAGGACCCCCATCACCAACTTCTTCCAGCC
GAAGAATGCCGACGAAAACGGCGCGCCAAATGCCAACGGCACGAGCGCTG
GTGATGATGGTGAGAGCGGTACCGGCACTACCCTAGCTTCTTCCTCCTCC
AAGAAACGGAAGACGCATGGTAAGAGCTCGTCTCAAGATGGAGGAGCACG
GGCAAGTTCGGGTGGCGGCGGTGGCGGCGGCAGCAGCGGCGATTGTGAGA
ATATCAAGCGGGGGTTTGTCAACTTTTGTCGGGCCAATCGAACGAAGATC
AAGGAGGAGATCACTAGCAGGACCCCCATCACCAACTTCTTCCAGCCGAA
GAATGCCGACGAAAACGGCGCGCCAAATGCCAACGGCACGAGCGCTGGTG
ATGATGGTGAGAGCGGTACCGGCACTACCCTAGCTTCTTCCTCCTCCAAG
AAACGGAAGACGCATGGTAAGAGCTCGTCTCAAGATGGAGGAGCACGGGC
AAGTTCGGGTGGCGGCGGTGGCGGCGGCAGCAGCGGCGATTGTGAGAATA
TCAAGCGGGGGTTTGTCAACTTTTGTCGGGCCAATCGAACGAAGGTGCAA
GCGGAGGTGAAGAGTGGGAGCAAATCGGACACAGCAGATCGCCTTCTCTT
CTTGTGGGGACAGCTGAGTGTGAAAGATATGGAGAAGTGGGACAAAGGCG
TGTTGCCGGCAGTAGGCAGCGCACGCGGATGAGTGCAAGCGGAGGTGAAG
AGTGGGAGCAAATCGGACACAGCAGATCGCCTTCTCTTCTTGTGGGGACA
GCTGAGTGTGAAAGATATGGAGAAGTGGGACAAAGGCGTGTTGCCGGCAG
TAGGCAGCGCACGCGGATGA back to top
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