mRNA_H-paniculata_contig19977.5101.1 (mRNA) Halopteris paniculata Hal_grac_a_UBK monoicous

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_H-paniculata_contig19977.5101.1
Unique NamemRNA_H-paniculata_contig19977.5101.1
TypemRNA
OrganismHalopteris paniculata Hal_grac_a_UBK monoicous (Halopteris paniculata Hal_grac_a_UBK monoicous)
Homology
BLAST of mRNA_H-paniculata_contig19977.5101.1 vs. uniprot
Match: A0A498M2F0_LABRO (Retrovirus-related Pol poly from transposon TNT 1-94 n=1 Tax=Labeo rohita TaxID=84645 RepID=A0A498M2F0_LABRO)

HSP 1 Score: 284 bits (726), Expect = 5.030e-82
Identity = 220/729 (30.18%), Postives = 343/729 (47.05%), Query Frame = 1
Query:    4 GIKQEFSTTYIPQQNDVAERSRRSIFEMARANMITANKVCRNWAEAVRSAVCCLNRSPTQPHNGGTPYKKWHGETPKLDHLCVFSYTAYGS-SSCSRDASSTTAWAGVLLGHDEDSLIYRTNNPENKSVQLSRNVKFDEEDFVTGHRGQHGNIGESNGDSTMKDAEPAVEDATSA---------------GTAAPVSRGNTTEPSGTEAQRPRDRSIKGSRGGKWRAAMDKEWGALVENETWESKGPGRLLTGRKAIRTKWSFKRELKEDGNVARCKAQIVAQGFSQVEGEDFIETSAPVAHIPTLCAVFSLAAEYNFELEGMDVDAAYLNARVEQELFVKLPPEFSLSPET*NLCAACVKACTALSRR----NSTLDDFVVGIGLDHSTTDSCLYFSRDDGGETDLLVAIYIGDLVIAGHREK-VDEFKHNINQRFRMKDLGSLA---------------------------LKISAPESADKPSEPKSLGTILSDIGDGIQESGRGRSDNSIEYRGMVGLLMYASTGTAPDIAYAVHQAARHMEDPCREDFGICKRIFRYLSTVPDLGITF-----------------GDKSNGHGPEG----LNDGAIMWYSRKQQLVMWSSTAAEYVAAGEAGKETVYIGDLLGSIGFGCRASTTLFEDNKSAINLSKGSGPHCRIKHIGVRGRGIRE*IRERVLALKYAQTGDQLADILTKELSRVKFQSLRNL 1983
            GI+ E +    P+QN VAER  +++ E  R+ +  A    + WAEA+ +AV   NRSPT+   G TP++ W GE PK+DHL +F  T Y       R      A   +LLG+  ++  YR  + +   V  SR+V F+E +            G  N        EP  E++                  G    V+   TTEP   +        +      KW+ AM+KE  +L  N  W       L  GRKA+ +KW FK ++  DG   R KA++VAQGFSQ  G D+ ET +PV    ++  + + A +Y  +L  MDV  A+LN  +++E++++ P  F +  +  +L     ++   L +     N  LD+ +  +G   +T D C+Y +    GE   ++A+Y+ D+++AG  +K + E K  + + F +KD+G L                            LK    E++   S P  + T L      ++ S      +  +++  VG L+Y ST T PDIAYAV+  AR    P ++ +   KRI RYL    +LG+ +                 GD+++     G    ++  A+ W S+KQ  V  S+  AEY+A   A +E V++  L+  +       T +FEDN+SAI ++K S  H R KHI ++   IRE I   V+ L+Y  T D +AD+ TK LS+ KF  LR +
Sbjct:   34 GIRHELTVPKTPEQNGVAERMNKTLMETVRSMLADAKLPQKFWAEALSTAVYLRNRSPTKSVKGMTPFEAWTGEKPKVDHLRIFGCTVYAHVPKDERKKLDPKAKKCILLGYGTETKGYRLYDSKLAKVFFSRDVIFNESNHAFEKEPVANEDGAVNRYVEFDCQEPDNEESPEQKVQRSERLRKPPDYYGEWVTVASNPTTEPKTVKDV------LSSPDKAKWKEAMEKEMESLYANNVWNLV---ELPKGRKAVGSKWVFKVKVDADGTFERHKARLVAQGFSQKFGSDYDETFSPVVRFESVRTIIAQAVQYGLKLHQMDVKTAFLNGELKEEVYMQQPEGFVVKGKE-HLVCKLNRSIYGLKQSPRCWNIVLDEQLKKMGFVQTTGDPCIYTAAT--GEM-FIIAVYVDDILLAGCSDKRMMEVKKMLAKHFEIKDMGELTHFLGVKIIQKPETGEIWMGQATYAENVLKKFGMENSKPVSTPVDINTKL------VKHSDDSEVMDPKQFQSAVGSLLYLSTRTRPDIAYAVNNVARFCAKPTKQHWTAVKRIMRYLKGTLNLGLLYNKDKPKECIGFSDADWAGDQNDRKSMSGYMFQISGAAVSWRSKKQTCVALSTAEAEYMALASAAQEAVWMRQLMTDLKVNQAGPTVMFEDNQSAICMAKNSQFHGRAKHIDIKYHFIREKIAGGVIDLQYCNTDDMVADMFTKGLSQEKFVKLREM 743          
BLAST of mRNA_H-paniculata_contig19977.5101.1 vs. uniprot
Match: A0A1J3IBS4_NOCCA (Retrovirus-related Pol polyprotein from transposon TNT 1-94 (Fragment) n=1 Tax=Noccaea caerulescens TaxID=107243 RepID=A0A1J3IBS4_NOCCA)

HSP 1 Score: 285 bits (729), Expect = 2.830e-81
Identity = 224/739 (30.31%), Postives = 348/739 (47.09%), Query Frame = 1
Query:    4 GIKQEFSTTYIPQQNDVAERSRRSIFEMARANMITANKVCRNWAEAVRSAVCCLNRSPTQPHNGGTPYKKWHGETPKLDHLCVFSYTAYGSSSC-SRDASSTTAWAGVLLGHDEDSLIYRTNNPENKSVQLSRNVKFDEEDFVTGHRGQHGNIGE---SNGDSTMKDAEPAVEDATSAGTAAPVSRGN------------------------------TTEPSG-TEAQRPRDRSIKGSRGGKWRAAMDKEWGALVENETWESKGPGRLLTGRKAIRTKWSFKRELKEDGNVARCKAQIVAQGFSQVEGEDFIETSAPVAHIPTLCAVFSLAAEYNFELEGMDVDAAYLNARVEQELFVKLPPEFSLSPET*NLCAACVKACTALSRRN----STLDDFVVGIGLDHSTTDSCLYFSRDDGGETDLLVAIYIGDLVIAGH-REKVDEFKHNINQRFRMKDLGSL----ALKISAPESADKPSEPKSLGTILS--------------DIGDGIQ-ESGRGRSDNSIEYRGMVGLLMYASTGTAPDIAYAVHQAARHMEDPCREDFGICKRIFRYLSTVPDLGITFGD---------------------KSNGHGPEGLNDGAIMWYSRKQQLVMWSSTAAEYVAAGEAGKETVYIGDLLGSIGFGCRASTTLFEDNKSAINLSKGSGPHCRIKHIGVRGRGIRE*IRERVLALKYAQTGDQLADILTKELSRVKFQSLRN 1980
            GI  E +T Y P+QN VAER  R++ EMAR+ +   N   + WAE+VR+AV  LN SPT+     TPY+ W G  P + HL VF   AY      +R      +   + LG+   S  YR  NP +  +  SRNV FDEE       G +G + E    N D  +    P   +A +   + P S                                 T++P+  TEA    D          WR AMD+E  ++ +N TW+      L  G+ +I  KW FK +   DG++ + KA++V +G++Q  G D+ ET +PVA   T+  + +L A  ++ +   DV +A+LN  + +E++V  P  F +  +         KA   L +      + +D F V  G + S ++  LY  +   G+  L+V +Y+ DL+  G     V +FK ++ ++F M DLG L     L++   E     S+ K    +L               +I + +Q + G G++D +  +R +VG L+Y  T T PDI++AV   +R M  P R+ FG  KR+ RY++   + G+ +                       KS       L  GA+ W S+KQ +   SS+ AEY AA  A  + V++  +L  +      +TT+F DNK+ I ++K    H R KHI ++   IR+ + E  +AL+Y  T +Q AD+LTK LS+ KF   R+
Sbjct:  164 GIHHELTTAYTPEQNGVAERKNRTVVEMARSMLKQKNLPNQFWAESVRTAVYLLNISPTKAVLNRTPYEAWCGRKPGVSHLRVFGSIAYSLIDAHNRKKLDDKSEKCIFLGYSSQSKGYRLYNPVSGKIIESRNVTFDEETVWRLREGDNGELEEIVVDNNDEQVVSESPVGSEANTPTNSVPNSXXXXXXXXXXXXSNAPQKFRSLQEIYEVQHAFFTSDPTMFTEAAEKED----------WRKAMDEEITSIEKNSTWQLV---ELPEGKHSIGVKWVFKTKYHADGSIQKYKARLVVKGYAQEYGVDYEETFSPVARFDTVRTLLALGAHMHWPIYQFDVKSAFLNGELLEEVYVDQPEGFVVRGKE-GFVYKLHKALYGLKQAPRAWYNKIDLFFVESGFERSRSEPTLYIKKQSEGDI-LIVCLYVDDLIYMGSCASLVADFKDSMMKKFEMSDLGLLHFFLGLEVKQVEDGIFVSQQKYAMDLLRRFNMTNCNVEETPMNINEKLQKDDGTGKAD-ATRFRSLVGGLIYL-THTRPDISFAVSAISRFMHCPTRQHFGAAKRLLRYIAATTEFGLWYNTVSEFELVGFTDSDWAGCVQDRKSTSGHVFNLGSGAVCWSSKKQNVTALSSSEAEYTAATSAACQAVWLRRILEDVKQEQLKATTIFCDNKATIAMTKNPAYHGRTKHISIKVHFIRDLVNEGSVALEYCSTNEQRADVLTKALSKSKFDYFRS 885          
BLAST of mRNA_H-paniculata_contig19977.5101.1 vs. uniprot
Match: A0A151T355_CAJCA (Retrovirus-related Pol polyprotein from transposon TNT 1-94 n=2 Tax=Cajanus cajan TaxID=3821 RepID=A0A151T355_CAJCA)

HSP 1 Score: 285 bits (729), Expect = 1.450e-79
Identity = 210/715 (29.37%), Postives = 347/715 (48.53%), Query Frame = 1
Query:    4 GIKQEFSTTYIPQQNDVAERSRRSIFEMARANMITANKVCRNWAEAVRSAVCCLNRSPTQPHNGGTPYKKWHGETPKLDHLCVFSYTAYGS-SSCSRDASSTTAWAGVLLGHDEDSLIYRTNNPENKSVQLSRNVKFDE----------EDFVTGHRGQHGNIGESNGDSTMKDAEPAVEDATSAGTAAPVSRGNTTEPSGTEAQRPRDRSIKGSRGGKWRAAMDKEWGALVENETWESKGPGRLLTGRKAIRTKWSFKRELKEDGNVARCKAQIVAQGFSQVEGEDFIETSAPVAHIPTLCAVFSLAAEYNFELEGMDVDAAYLNARVEQELFVKLPPEFSLSPET*NLCAACVKACTALSRRN----STLDDFVVGIGLDHSTTDSCLYFSRDDGGETDLLVAIYIGDLVIAGHR-EKVDEFKHNINQRFRMKDLGS----LALKISAPESADKPSEPKSLGTILSD--------------IGDGIQESGRGRSDNSIEYRGMVGLLMYASTGTAPDIAYAVHQAARHMEDPCREDFGICKRIFRYLSTVPDLGITFGDKSNGHGPEGLND----------------------GAIMWYSRKQQLVMWSSTAAEYVAAGEAGKETVYIGDLLGSIGFGCRASTTLFEDNKSAINLSKGSGPHCRIKHIGVRGRGIRE*IRERVLALKYAQTGDQLADILTKELSRVKFQSLRN 1980
            GI+ + +  Y PQQN V+ER  R++ EMAR  +         WAEAV ++V  LN  PT+   G TP++ WHG TP ++HL VF    Y       RD     +  G+ LG+   S  YR  NP  K + +SRNVKFDE           +     + +  N+ E N +S  ++ +   +D    GT          E     A  P++ +      G WR AM +E   + +N TW+          +K I  KW ++ +L  DG+V + KA++V +G+ Q  G DF++T APVA   T+  + +LAA++ +++   DV +A+LN  +E++++V  P  F +     N      KA   L +      + +D++++  G + S  ++ LY  R    E  L++++Y+ D+++ G   + + +FKH++   F M DLG     L ++I   ++    S+ K +  IL                I + +  +      ++  YR ++G L+Y S  T PDI +A    +R M  P +  +G  KR+ RYL    D G+ F    +G   +G  D                      G   W S+KQ++V  SS  AEY++A  A    +++  +L  +      +T ++ DNKSAI ++K    + R KHI V+   IRE  + + ++LK+  + +Q+ADI+TK LS+ KF+ LR+
Sbjct:  542 GIQHQLTVPYTPQQNGVSERKNRTVMEMARCLLFEKGLPKTFWAEAVNTSVYLLNLLPTKALKGNTPFEAWHGRTPSVEHLKVFGCVCYALVPEVKRDKLDQKSEVGIFLGYSSYSKGYRIYNPATKKILVSRNVKFDELSRWNWEKSKAEASNKRQLEVDNLQEQNSESEEQNLDD--DDFPVRGTR---DLAEIYERCNVAALEPKEYAEAAELEG-WRVAMQEEMNMIEKNNTWQLVD---RPINQKVIGLKWVYRTKLNYDGSVNKLKARLVVKGYHQQYGVDFLDTFAPVARHDTIRMLVALAAKFGWKIYHFDVKSAFLNGFLEEDIYVDQPEGFQVKGSE-NKVYKLHKALYGLKQAPRAWYTRIDNYLLQKGFERSENEATLYVKRSQN-EVKLIISLYVDDMLVIGSDFDSLRQFKHDMENEFEMSDLGQMNYFLGMEIYQCDAGIFISQRKYVLEILKKFHMEKCKPVDTPLVINEKLSLNDAIAKVDASLYRSLIGSLLYLSA-TRPDIMFAASLLSRFMHSPSQAHYGAAKRVLRYLKGTTDYGLWFLQNESGE-LQGYADSDWAGSIDDSKSTSGYVFSFGSGVFTWNSKKQEVVAQSSAEAEYISAAAAANHAIWLRKILCDVKQHQNEATIIWVDNKSAIAIAKNPVQYGRTKHIKVKYHAIREAEKSKEVSLKHCSSENQIADIMTKALSKSKFEMLRS 1243          
BLAST of mRNA_H-paniculata_contig19977.5101.1 vs. uniprot
Match: A0A6S7HEL0_PARCT (Retrovirus-related Pol poly from transposon TNT 1-94 (Fragment) n=4 Tax=Paramuricea clavata TaxID=317549 RepID=A0A6S7HEL0_PARCT)

HSP 1 Score: 281 bits (718), Expect = 4.960e-78
Identity = 216/724 (29.83%), Postives = 341/724 (47.10%), Query Frame = 1
Query:    4 GIKQEFSTTYIPQQNDVAERSRRSIFEMARANMITANKVCRNWAEAVRSAVCCLNRSPTQPHNGGTPYKKWHGETPKLDHLCVFSYTAYGSSSCSRDASSTTAWAGVLLGHDEDSLIYRTNNPENKSVQLSRNVKFDEEDFVTGHRGQHGNIGESNGDSTMK---DAEPAVEDATSAGTA-----------APVSRGNTTEPSGTEAQRPR--DRSIKGSRGGKWRAAMDKEWGALVENETWESKGPGRLLTGRKAIRTKWSFKRELKEDGNVARCKAQIVAQGFSQVEGEDFIETSAPVAHIPTLCAVFSLAAEYNFELEGMDVDAAYLNARVEQELFVKLPPEFSLSPET*NLCAACVKACTALSRR----NSTLDDFVVGIGLDHSTTDSCLYFSRDDGGETDLLVAIYIGDLVIAGHR-EKVDEFKHNINQRFRMKDLGSL----ALKISAPESADKPSEPKSLGTILSDIG------------------DGIQESGRGRSDNSIEYRGMVGLLMYASTGTAPDIAYAVHQAARHMEDPCREDFGICKRIFRYLSTVPDLGITF-----------------GDKSNGHGPEG----LNDGAIMWYSRKQQLVMWSSTAAEYVAAGEAGKETVYIGDLLGSIGFGCRASTTLFEDNKSAINLSKGSGPHCRIKHIGVRGRGIRE*IRERVLALKYAQTGDQLADILTKELSRVKFQSLRNL 1983
            G+K E S    P+QN VAER  R++ E  R  +I +    + W EA+ +AV   NRSPT+     TP++ W G  P + HL  F  T Y                   +  DE   +       N  V  SR+VKF+E +F    +   GN  +++   T++   D +  VED  +               AP   G     +  +   P     ++ G    +W  AM +E  +L E++ WE      L   RKA+  KW FK +   DG++ R KA++VAQGFSQ  G D+ ET +PV     +  V +L+ +   +L  MDV AA+LN  +E E+++K P  F +  +  +L     K+   L +     NS LD+ +  IG   + +D C+Y   +DG     +VAI++ D+++AG   EK+ + K +I +RF++KD+G L     L++   ++     +P    +I+   G                    I++S      N  EY+  VG L+Y S+ T PDI +AV+  A+   +P  E +   KRIFRYL    + G+ +                 GD ++     G    +N  A+ W S+KQ  V  S+  AEYVA   A +E +++  LL  +        T++EDN+SAI +SK    H R KHI ++   +R+ + ++ L + Y  TG  LAD+ TK + + +F+ LR L
Sbjct:  569 GVKHELSVPKTPEQNGVAERLNRTLIEAVRGMLIQSKLPQKFWVEALSTAVYLHNRSPTKGVANMTPFEAWTGVKPDVKHLRSFGCTVYAH-----------------IPKDERKKLDSKAKKCNSRVIYSRDVKFNESEFGI-EKELPGNEFQADKHVTLELSNDNDVVVEDDQADNAEINERQPVRERRAPDRFGEWVTIASKDVVEPTTVSEALCGPNAERWHEAMQQEMDSLQEHDVWELT---ELPKDRKAVGCKWVFKVKHNADGSIERHKARLVAQGFSQRFGVDYDETFSPVVRFEKIRTVIALSVQRGLKLHQMDVTAAFLNGELEDEVYMKQPEGFEVKGKE-HLVCKLNKSLYGLKQSSRCWNSVLDEHLKSIGFTQTESDPCIYVKEEDGDI--FVVAIHVDDIILAGKTDEKIAKVKESIAERFQVKDMGELKYILGLQVIQEDAKVWIGQPTYTASIIKKYGMENCKPVETPVDLSSKLVSAIEDS---ELFNKEEYQSAVGSLLYLSSATRPDITFAVNNVAKFSANPTNEHWTAVKRIFRYLKGTVNYGLLYSENANPDCVGFSDADWAGDLNDRKSTSGYTFQINGAAVSWRSKKQTCVALSTAEAEYVALSAAAQEALWMRQLLTDLNVNIDEPMTIYEDNQSAIAMSKNPQFHGRSKHIDIKYHFVRDQVEKKTLTVLYCPTGSMLADLFTKGIPKEQFKKLREL 1265          
BLAST of mRNA_H-paniculata_contig19977.5101.1 vs. uniprot
Match: A0A0K8WJW9_BACLA (Retrovirus-related Pol polyprotein from transposon TNT 1-94 (Fragment) n=2 Tax=Bactrocera latifrons TaxID=174628 RepID=A0A0K8WJW9_BACLA)

HSP 1 Score: 271 bits (693), Expect = 7.990e-75
Identity = 221/760 (29.08%), Postives = 345/760 (45.39%), Query Frame = 1
Query:    4 GIKQEFSTTYIPQQNDVAERSRRSIFEMARANMITANKVCRNWAEAVRSAVCCLNRSPTQPHNGGTPYKKWHGETPKLDHLCVFSYTAYGSSSCSRDASSTTAWAGVLLGHDEDSLIYRTNNPENKSVQLSRNVKFDEEDFVTG--------------------------HRGQHGNIGESNGDSTMKDAEPAVEDATSAGTAAPVS-------------RG----------------------NTTEPSGTEAQRPRDRSIKGSRGGKWRAAMDKEWGALVENETWESKGPGRLLTGRKAIRTKWSFKRELKEDGNVARCKAQIVAQGFSQVEGEDFIETSAPVAHIPTLCAVFSLAAEYNFELEGMDVDAAYLNARVEQELFVKLPPEFSLSPET*NLCAACVKACTALSRR----NSTLDDFVVGIGLDHSTTDSCLYFSRDDGGETDLLVAIYIGDLVIAGHRE-KVDEFKHNINQRFRMKDLGS------LALKISAPESADKPSEPKSLGTILSDIG------------DGIQESGRGRSD---NSIEYRGMVGLLMYASTGTAPDIAYAVHQAARHMEDPCREDFGICKRIFRYLSTVPDLGITF----------------GDKSNGHGPEG----LNDGAIMWYSRKQQLVMWSSTAAEYVAAGEAGKETVYIGDLLGSIGFGCRASTTLFEDNKSAINLSKGSGPHCRIKHIGVRGRGIRE*IRERVLALKYAQTGDQLADILTKELSRVK 1962
            GIK+E +  Y PQQN VAER+ R+I EMA++ +I AN     WAEAV++AV   NR PT+  N  TP++ W    P + HL +F   A+     ++          + +G+   +  YR  + + + +   R+VKF E +F T                            +    N+GE    +  +D     E AT++ + A  S             RG                      N+TE   T  Q P + ++ G    +WR +M  E+ AL+ N TW       L  G+KAI +KW ++ +    GN+ + K+++VA+G  Q  G ++ ET +PV    T+  +F++AAE    +  +D+  AYLN+++E+ +F+K P  F +S +         KA   L +     N+TLD  +  IG      + CLY + ++   +   +A+Y+ DL+I    E ++ E K  I  +F+M D G+      L ++    + A    + K +  ++   G             G Q     ++    N+ EY+ ++G LMY +  + PDI +AV + +RH  DP  E     K I RYLS   D+ I +                 D S+     G    L   +  W S KQ +   SST AEYVA   A KE +Y+  LL  IG+      TL+ DN SA ++++    H R KHI ++   IRE +    + LKY  T   +ADILTK LSR K
Sbjct:  440 GIKRELTVPYTPQQNGVAERANRTIVEMAKSLLIHANLGQFLWAEAVQTAVYLRNRCPTKALNSRTPFEVWKQRKPSVKHLRIFGSRAFALDKTNKGKFDAKGREYIFVGYSNTAKAYRLYDQQRRIIVERRDVKFIEGEFNTSITSEISSSQCNGDFATNIIRLKSPENEQSATENVGEREMKNDFEDLNEEDEFATASDSEAEQSATSSEQDELPKRGRGRPKYIRTGQPGRPKKHFQLLNVNSTEDDETP-QSPTE-ALSGQHAVEWRKSMQLEYDALIANNTWSLVD---LPKGQKAIGSKWVYRIKRDASGNINKFKSRLVAKGCGQQLGVNYWETFSPVIRYETIRMLFAIAAEKELYMHHIDISNAYLNSKLEENIFMKQPEGF-ISKKYPEKVLKLQKAIYGLKQSGRVWNTTLDAVLTSIGFKRCRHEPCLYVNNNNQQYS--YIAVYVDDLIIICPSENEIAEIKKKITAKFQMHDYGTVSDFLGLEIQRKGEKGAISLHQKKYIRAVIDSFGMQNCRATATPLDPGFQVGCTDKNCVKVNATEYQSLIGSLMYLAVLSRPDILHAVSKLSRHNTDPHIEHEAAAKHILRYLSGTIDMSIEYCKTGEDVKGFADADWANDSSDRKSYTGYAFYLGGSSFSWSSTKQNITALSSTEAEYVALAMAAKEAIYLSRLLSEIGWSSSTPITLYGDNISAQHIARNPIHHKRTKHIDIKYHFIREKVENNEINLKYVSTDKNVADILTKSLSRQK 1191          
BLAST of mRNA_H-paniculata_contig19977.5101.1 vs. uniprot
Match: A0A7M6DPI8_9CNID (Uncharacterized protein n=1 Tax=Clytia hemisphaerica TaxID=252671 RepID=A0A7M6DPI8_9CNID)

HSP 1 Score: 268 bits (686), Expect = 1.130e-73
Identity = 213/740 (28.78%), Postives = 353/740 (47.70%), Query Frame = 1
Query:    4 GIKQEFSTTYIPQQNDVAERSRRSIFEMARANMITANKVCRNWAEAVRSAVCCLNRSPTQPHNGGTPYKKWHGET-PKLDHLCVFSYTAYGSSSCSR-----DASSTTAWAGVLLGHDEDSLIYRTNNPENKSVQLSRNVKFDEEDF-VTGHRGQHGNIG---ESNGDSTMKDAEPAVEDATSAGTAAPVSRGNTT-------------------EPSGTEAQRPRDRSIKGSRGGKWRAAMDKEWGALVENETWE--SKGPGRLLTGRKAIRTKWSFKRELKEDGNVARCKAQIVAQGFSQVEGEDFIETSAPVAHIPTLCAVFSLAAEYNFELEGMDVDAAYLNARVEQELFVKLPPEFSLSPET*NLCAACVKACTALSRR----NSTLDDFVVGIGLDHSTTDSCLYFSRDDGGETD--LLVAIYIGDLVIAGHREKV-DEFKHNINQRFRMKDLGSLALKISAPESADKPSEPKS------LGTILS--------DIGDGIQESGRGRS---DNSI----EYRGMVGLLMYASTGTAPDIAYAVHQAARHMEDPCREDFGICKRIFRYLSTVPDLGITFGDKSNG----HG---------------PEG----LNDGAIMWYSRKQQLVMWSSTAAEYVAAGEAGKETVYIGDLLGSIGFGCRASTTLFEDNKSAINLSKGSGPHCRIKHIGVRGRGIRE*IRERVLALKYAQTGDQLADILTKELSRVKFQSLR 1977
            GI +E +  Y PQQN VAER  R++ E AR+ +  A K  + WAEA+ +A    NRSPT      TPY+ WH +  P + +L VF   +Y     ++     D  S +    + +G+  +   ++  +P+ + +  SR+V F E+DF +    G + N     ES      +D      +A    T  P  R N                     EP+  E       ++       W+ A+  E+ +L+ENETW+     P + L G     +KW FK +   DG + RCKA++VAQG+SQ  G D+ +  APVA   ++ +V ++  E + EL  MDV  A+LN  +E+++F+K P  F ++ +  N+     K+   L +     N  +D+F+   G   +  D C+Y  +   G+    L+VA+Y+ DL+IA +  ++  E K  + +RF M+D   +   +      D+ +   +      L ++L+         +   ++ S +      D  I    +Y+  +G L YAS GT PDI+ AV   ++HM  P ++ +   KR+ RYL    D G+ +    +G    HG                 G    + +  + W S++Q +V  S T AEYVA  +A +E +++  L   + F     T +FEDN+ AI L+K    H R KHI ++   +R+ + ++V+ L+Y  T + +AD+LTK L R +F+ LR
Sbjct:  563 GISREPTIPYSPQQNGVAERMNRTLLETARSMLHHAQKPIKFWAEAISTACYVRNRSPTAFLKETTPYEIWHRKKKPDVSNLKVFGCKSYVHVPDTKRKGKFDKKSISC---IFVGYPSNENGFKFYDPQTRKMFRSRDVTFVEKDFDIEKFDGTNSNFEFFPESTEPDEPEDNXXXXXNARPVRTRRPPERLNVLTGEWWNLIDAASIAIVDEEEPTTIE------EALSSPNAELWKDAIQNEYDSLIENETWKLVEMPPDKNLVG-----SKWVFKHKRGADGKIQRCKARLVAQGYSQKSGIDYNDVFAPVAKYNSIRSVLAITNELDLELHQMDVKTAFLNGDLEEDIFMKQPEGF-INRDNPNMACKLQKSIYGLKQSARCWNEKMDEFLKESGFTRNDADPCIYHKQITKGDKSFTLIVAVYVDDLLIACNNIQILREQKQKLGERFEMEDKSEVHFILGMQVKRDRKNRRLTIDQNAFLSSVLNRFNMNECKPVATPLEPSMKFEKLADDEEIVKLKDYQSAIGCLTYASIGTRPDISAAVGVLSQHMSKPGKQHWIGVKRVLRYLKGTLDYGLIYEGSESGDILLHGFADADWAGDIDTRKSTSGYVFKVGNSTVSWKSKRQSIVALSKTEAEYVALSQATQEVIWLRTLFKGMDFEQTDPTKMFEDNQGAIELAKNQPNHSRTKHIDIKFHHVRDAVAKKVIDLEYCPTDEMIADLLTKGLPRPQFEKLR 1287          
BLAST of mRNA_H-paniculata_contig19977.5101.1 vs. uniprot
Match: A0A5S6QN85_TRIMR (Integrase catalytic domain-containing protein n=2 Tax=Trichuris muris TaxID=70415 RepID=A0A5S6QN85_TRIMR)

HSP 1 Score: 260 bits (664), Expect = 2.650e-72
Identity = 227/747 (30.39%), Postives = 339/747 (45.38%), Query Frame = 1
Query:    4 GIKQEFSTTYIPQQNDVAERSRRSIFEMARANMITANKVCRNWAEAVRSAVCCLNRSPTQPHNGGTPYKKWHGETPKLDHLCVFSYTAYGSSSCSRDAS-STTAWAGVLLGHDEDSLIYRTNNPENKSVQLSRNVKFDEE-------------DFVTGHRGQHGNIGESNGDSTMKD-----AEPAVE--------DATSAGTAAPVSR------------GNTTEPSGTEA--QRP-RDRSIKGSRGGKWRAAMDKEWGALVENETWESKGPGRLLTGRKAIRTKWSFKRELKEDGNVARCKAQIVAQGFSQVEGEDFIETSAPVAHIPTLCAVFSLAAEYNFELEGMDVDAAYLNARVEQELFVKLPPEFSLSPET*NLCAACVKACTALSRR----NSTLDDFVVGIGLDHSTTDSCLYFSRDDGGETDLLVAIYIGDLVIAGHREKVD-EFKHNINQRFRMKDLGS----LALKISAPESAD---------------------KPSEPKSLGTILSDIGDGIQESGRGRSDNSIEYRGMVGLLMYASTGTAPDIAYAVHQAARHMEDPCREDFGICKRIFRYLSTVPDLGITF-----------------GDKSNGHGPEG----LNDGAIMWYSRKQQLVMWSSTAAEYVAAGEAGKETVYIGDLLGSIGFGCRASTTLFEDNKSAINLSKGSGPHCRIKHIGVRGRGIRE*IRERVLALKYAQTGDQLADILTKELSRVKF 1965
            GI+ + +  Y PQQN VAER  RS+ EMAR  ++ A    R W EA+ +A    NR P++     TPY+ ++G  P + HL VF   AY      R    S +A  GVL+G+   +  YR  +P+   V  SR+    E              D       QH  +      S   D     AEP+ E        +  +A  A    R             +T EP   E   Q P ++R        KW  A++ E  +L +++ WE      L  G++ I  KW FK +  + GN+   KA++VA+GFSQ++G D+ ET APV    T+  +F++AA  N  +  +DV  AYLN ++++ELF++ PP FS  P T        ++   L +     N    D +  +G   +  D CL FSR++   T   V +Y+ DL+IAG   ++  +    +N  F +KDLG     L +++   E                        KP         LS      +E      DN+ EYR  +G L+Y +T T PDI++AV Q  R ME P + D+   KR+ RYL+  P   + F                 GD ++     G    +    + W SRKQ  V  SST AEYVAA EA ++ ++I  +L  IG      T ++EDN+  I +++      R KHI +R   +RE     ++AL Y  + +  AD+LTK L++ KF
Sbjct:  130 GIEHQLTVPYTPQQNGVAERKNRSLIEMARCMLLDAGLSKRFWGEAIITAAYLQNRLPSRSVEC-TPYEHFYGSKPAVSHLRVFGSKAYSLIPKERRRKLSQSAMEGVLVGYGNTTKGYRLLDPKTARVWYSRSAHIVESPQQLSVLHERKRPDAPINRPLQHKMVNLDEWGSFKNDWADVPAEPSSERQELPRRSERLAAKEAEVTERWSNKDYVWKVIKDDTKEPMTWEEMLQLPIKERE-------KWMEAVNAELMSLEKHKVWEIAD---LPPGKRTISAKWVFKAKRDDQGNIHTYKARLVARGFSQIQGRDYDETFAPVVRHETVRILFAVAAMKNMHVRHVDVKTAYLNGKLDEELFLEPPPGFS-QPTTDGKVLRLRRSLYGLKQSARVWNQVATDALQKLGFRPNRADPCL-FSRNEKNNTMSYVLLYVDDLLIAGSSPELTCDVGKQLNSYFEIKDLGEVRQYLGMQVEREEDGSFLLYQAAKVRHLLKEHGLLDAKPVATPMEANFLSST----EEESPKLPDNA-EYRKAIGSLLYLATATRPDISFAVGQLCRCMEHPTQRDWKAVKRVMRYLAGSPYRKLRFSANGSIKLSGFVDADWAGDHADRKSTSGYAFKVGTSTVAWSSRKQSFVALSSTEAEYVAASEACRDLLWIRQVLEDIGIKQVEPTIVYEDNQGCIKMAQSERHTRRTKHIDIRYHQLRELQESGIIALTYCPSNEMPADMLTKPLTKDKF 858          
BLAST of mRNA_H-paniculata_contig19977.5101.1 vs. uniprot
Match: A0A0J7K6W1_LASNI (Gag-pol polyprotein n=1 Tax=Lasius niger TaxID=67767 RepID=A0A0J7K6W1_LASNI)

HSP 1 Score: 262 bits (669), Expect = 2.280e-71
Identity = 218/751 (29.03%), Postives = 339/751 (45.14%), Query Frame = 1
Query:    4 GIKQEFSTTYIPQQNDVAERSRRSIFEMARANMITANKVCRNWAEAVRSAVCCLNRSPTQPHNGGTPYKKWHGETPKLDHLCVFSYTAYGS-SSCSRDASSTTAWAGVLLGHDEDSLIYRTNNPENKSVQLSRNVKFDEEDF--VTGHRGQHGNIGESNG----DSTMKDAEPAVEDATSAGTAAPVSRGNTTEPSGTEAQRPRDRSIKGSRGG---------------------------------KWRAAMDKEWGALVENETWESKGPGRLLTGRKAIRTKWSFKRELKEDGNVARCKAQIVAQGFSQVEGEDFIETSAPVAHIPTLCAVFSLAAEYNFELEGMDVDAAYLNARVEQELFVKLPPEFSLSPET*NLCAACVKACTALSRR----NSTLDDFVVGIGLDHSTTDSCLYFSRDDGGETDLLVAIYIGDLVIAGHREKVDE-FKHNINQRFRMKDLGSLA--LKISAPESAD-----------------------KP-SEPKSLGTILSDIGDGIQESGRGRSDNSIEYRGMVGLLMYASTGTAPDIAYAVHQAARHMEDPCREDFGICKRIFRYLSTVPDLGITF-----------------GDKSNGHGPEG----LNDGAIMWYSRKQQLVMWSSTAAEYVAAGEAGKETVYIGDLLGSIGFGCRASTTLFEDNKSAINLSKGSGPHCRIKHIGVRGRGIRE*IRERVLALKYAQTGDQLADILTKELSRVKFQSLRN 1980
            GI+ + +  Y PQQN VAER  R + E A+  ++ AN   R W EA+ +A    NR  ++  N  TP + + GE P + H+ VF    Y       R      A  GVL+G+D ++  YR  +P    + +SR+V+  E D    + H+       E +G    D  M +        +   T +  S      PS    + PR R  + +  G                                  W  A ++E  +L E++TWE      L  G+KAI  KW FK +L  +G V   KA++VA+GFSQ  GED+ ET APV    T+  +  +AA     +  +DV +AYLN ++E+E+F++ PP F       +     +K+   L +     N   ++ +  +G      D CLY  ++ G  T   V +Y+ DL++AG   +V +    ++ + F +KDLG++   L I     AD                       KP + P   G + S+  D I      +  N+ +YR  +G L+Y +T + PDIA AV    R +E+P   D+   KR+ RYL++  D  +                   GDK++     G    L +G + W SRKQ  V  SST AEY+AA  A KE +++  LL  +       T + EDN+  I+L +      R KHI VR   IR+   ++++ ++Y  +   LAD+LTK L++ +F  L N
Sbjct:  576 GIQHQLTVVYTPQQNGVAERKNRFLTETAKCMLLDANLDNRFWGEAILTATYLQNRMISRSINK-TPVELFTGEKPNISHIRVFGSKVYSLIPKQKRRKWDDKAEEGVLVGYDGNTKGYRILDPNTNRIWISRSVRIIEHDANQFSLHQTSQKEKAEIDGIKMIDYDMSETNHEEASRSEVETESNASDEEYEMPSSVTPETPRRRVSQRTNKGIPPQRLVYKVQTNSIKEPESWAKMLQLPLRERQSWITAAEEEIKSLNEHQTWELTD---LPPGKKAITCKWVFKAKLDSEGQVHTYKARLVARGFSQRYGEDYDETFAPVVKHETIRILLLVAAHKGLHVRHLDVKSAYLNGKLEEEIFLEQPPGFQKRGHE-SKVLRLLKSLYGLKQSARAWNKRANEALAQLGFQSKNADQCLYTRKEKGNNT-TYVLLYVDDLLVAGTSAEVTQKVSKDLQRHFNIKDLGNVNHYLGIQIEREADGSFLLSQKGKISKMLEEYGLLEPKPMATPMETGFLSSEADDSI------KLPNNSQYRKAIGSLLYIATVSRPDIALAVGILCRCVENPTERDWKAVKRVMRYLASTIDKKLQLSSFGKTELECFVDADWAGDKTDRKSTSGYVFRLGNGTVAWSSRKQTTVAMSSTEAEYIAASYASKELLWLRQLLKDMNIPAEGPTIINEDNQGCIHLIESDRCEARTKHIHVRYHQIRDLREKKIIDVRYCPSHTMLADLLTKPLAKERFLELTN 1314          
BLAST of mRNA_H-paniculata_contig19977.5101.1 vs. uniprot
Match: W8C3B0_CERCA (Retrovirus-related Pol polyprotein from transposon TNT 1-94 (Fragment) n=1 Tax=Ceratitis capitata TaxID=7213 RepID=W8C3B0_CERCA)

HSP 1 Score: 256 bits (654), Expect = 4.410e-71
Identity = 212/736 (28.80%), Postives = 333/736 (45.24%), Query Frame = 1
Query:    4 GIKQEFSTTYIPQQNDVAERSRRSIFEMARANMITANKVCRNWAEAVRSAVCCLNRSPTQPHNGGTPYKKWHGETPKLDHLCVFSYTAYGSSSCSRDASSTTAWAGVLLGHDEDSLIYRTNNPENKSVQLSRNVKFDEEDFVTGHRGQHGNIGESN-----------GDSTMKDAEPAVEDATSAGTAAPVSRGNTTEPSGTEAQRPR------------------DRSIKGSRGGKWRAAMDKEWGALVENETWESKGPGRLLTGRKAIRTKWSFKRELKEDGNVARCKAQIVAQGFSQVEGEDFIETSAPVAHIPTLCAVFSLAAEYNFELEGMDVDAAYLNARVEQELFVKLPPEFSLSPET*NLCAACVKACTALSRR----NSTLDDFVVGIGLDHSTTDSCLYFSRDDGGETDLLVAIYIGDLVIAG-HREKVDEFKHNINQRFRMKDLG--SLALKISAPESADKPS-------------------EPKSLGTILSDIGDGIQ--ESGRGRSDNSIEYRGMVGLLMYASTGTAPDIAYAVHQAARHMEDPCREDFGICKRIFRYLSTVPDLGITF----------------GDKSNGHGPEG----LNDGAIMWYSRKQQLVMWSSTAAEYVAAGEAGKETVYIGDLLGSIGFGCRASTTLFEDNKSAINLSKGSGPHCRIKHIGVRGRGIRE*IRERVLALKYAQTGDQLADILTKELSRVKFQSLRN 1980
            GI  +F+  Y PQQN VAER  R++ EMAR  ++ AN     WAEAV +A    NRS T+     TPY+ W+   P + H   F   AY  +   +          V++G+D  +  YR  +   K + +SR+V F E             I E N            ++++ D E A E+         +  G        +  RP+                  D+++      +WR AM +E+ AL++NETW       L    K I+ KW F  +  ++G + R KA++VA+G SQ+ G ++ +T +PV    T+  +F+LAAEY   L  +DV  A+LN +V+ ++++  P  F +S +  N      KA   L +     N  L + +V IG     T+ C+Y ++  G + +LL A+Y+ DL+IA  H++++   K  I++ F++ D G   L L +    + +K +                   E + + T L D    I   +S   R D   EY+ ++G L+Y +  T PDI + V + A+   +P  E     KR+ RYL    D  + +                G+        G    L   A+ W S+KQ  V  SST AEY+A   A KE +++   L  I   C     +  DN SAI+L K    H R KHI +R   IR+   +  + L+Y  + D +AD+LTK LS++      N
Sbjct:  106 GILHQFTVPYTPQQNGVAERFNRTLVEMARCMLVGANLSEYLWAEAVNTAAYLRNRSTTKALEVMTPYEAWYKRKPVVSHFKTFGSIAYALNKKPKGKFEAKGKKYVMVGYDSAAKAYRLFDLATKGIIVSRDVSFIEPSISKECASVELEILECNEAEVNDNNIEVANNSLSDYESAQEENEEESDIQRIGPGRPKLVRSGKPGRPKKEYHLLNLLCDVDIPNTVDQAMASEYADEWRKAMREEYQALLDNETWNLVD---LPENEKVIKCKWVFAVKKNKEGEINRFKARLVAKGCSQIYGVNYTDTFSPVVRYSTIRIIFALAAEYELYLHHVDVSTAFLNGKVDDDIYMAQPEAF-VSRDHPNKVLKLKKALYGLKQAGRQWNVKLHEILVKIGFKQCVTEPCVY-TKHHGDKINLL-AVYVDDLLIASSHKQELQFIKQQISKYFQVVDKGPVELFLSMEVERNGEKGAIAIRQKGHIKQLLQQHNMLECRPIATPL-DAKQQINCIDSECKRVDKQ-EYQSLIGSLLYLALCTRPDIMHTVCKLAQQNSEPHSEHLAAAKRVLRYLCFTTDFALRYYKTGSSIQCYADADWGGESFERKSYTGYVFLLAGCAVSWESKKQSTVALSSTEAEYIALSSAAKEVMFLKQFLEEIKQHCIDKIVIRGDNLSAIHLVKNPVYHTRCKHIEIRYHHIRDMYNKNFIDLEYCSSKDNIADVLTKNLSKLNHNDFVN 833          
BLAST of mRNA_H-paniculata_contig19977.5101.1 vs. uniprot
Match: A0A7D9HZ03_PARCT (Reverse transcriptase Ty1/copia-type domain-containing protein n=1 Tax=Paramuricea clavata TaxID=317549 RepID=A0A7D9HZ03_PARCT)

HSP 1 Score: 251 bits (641), Expect = 1.280e-70
Identity = 195/657 (29.68%), Postives = 316/657 (48.10%), Query Frame = 1
Query:  199 TPYKKWHGETPKLDHLCVFSYTAYGS-SSCSRDASSTTAWAGVLLGHDEDSLIYRTNNPENKSVQLSRNVKFDEEDFVTGHRGQHGNIGESNGDSTMK---DAEPAVEDATSAGTA-----------APVSRGNTTEPSGTEAQRPR--DRSIKGSRGGKWRAAMDKEWGALVENETWESKGPGRLLTGRKAIRTKWSFKRELKEDGNVARCKAQIVAQGFSQVEGEDFIETSAPVAHIPTLCAVFSLAAEYNFELEGMDVDAAYLNARVEQELFVKLPPEFSLSPET*NLCAACVKACTALSRR----NSTLDDFVVGIGLDHSTTDSCLYFSRDDGGETDLLVAIYIGDLVIAGHR-EKVDEFKHNINQRFRMKDLGSL----ALKISAPESADKPSEPKSLGTILSDIG-----------DGIQESGRGRSDNSI----EYRGMVGLLMYASTGTAPDIAYAVHQAARHMEDPCREDFGICKRIFRYLSTVPDLGITF-----------------GDKSNGHGPEG----LNDGAIMWYSRKQQLVMWSSTAAEYVAAGEAGKETVYIGDLLGSIGFGCRASTTLFEDNKSAINLSKGSGPHCRIKHIGVRGRGIRE*IRERVLALKYAQTGDQLADILTKELSRVKFQSLRNL 1983
            TP + W G  P + HL  F    Y       R    + A   V LG+  ++  YR  +P+N  V  SR+VKF+E +F    +   GN  +++   T++   D +  VED  +               AP   G     +  +   P     ++ G    +W  AM +E  +L E++ WE      L   RKA+  KW FK +   DG++ R KA++VAQGFSQ  G D+ ET +PV    ++  V +L+ +   +L  MDV AA+LN  +E E+++K P  F +  +  +L     K+   L +     NS LD+ +  IG   + +D C+Y   +DG     +VAI++ D+++AG   EK+ + K +I +RF++KD+G L     L++   ++     +P    +I+   G           D   +      D+ +    E++  VG L+Y S+ T PDI +AV+  A+   +P  E +   KRIFRYL    + G+ +                 GD ++     G    +N  A+ W S+KQ  V  S+ AAEYVA   A +E +++  LL  +        T++EDN+SAI +SK    H R KHI ++   +R+ + ++ L + Y  TG  LAD+ TK + + +F+ LR L
Sbjct:    2 TPIEAWTGVKPDVKHLRSFGCIVYAHIPKDERKKLDSKAKKCVPLGYGTETKGYRLYDPQNSRVIYSRDVKFNESEFGI-EKELPGNEFQADKHVTLELSNDNDVVVEDDQADNAEINERQPVRERRAPDRFGEWVTIASKDVVEPTTVSEALCGPNAERWHEAMQQEMDSLQEHDVWELT---ELPKDRKAVGCKWVFKVKHNADGSIERHKARLVAQGFSQRFGVDYDETFSPVVRFESIRTVIALSVQRGLKLHQMDVTAAFLNGELEDEVYMKQPEGFEVKGKE-HLACKLNKSLYGLKQSSRCWNSVLDEHLKSIGFTQTESDPCIYVKEEDGNI--FVVAIHVDDIILAGKTDEKIAKVKESIAERFQVKDMGELKYILGLQVIQEDAKVWIGQPTYTASIIKKYGMENCKPVETPVDLSSKLVSAMEDSELFNKEEHQSAVGSLLYLSSATRPDITFAVNNVAKFSANPTNEHWTAVKRIFRYLKGTVNYGLLYSENANPDCVGFSDADWAGDLNDRKSTSGYTFQINGAAVSWRSKKQTCVALSTAAAEYVALSAAAQEALWMRQLLTDLNVNIDEPMTIYEDNQSAIAMSKNPQFHGRSKHIDIKYYFVRDQVEKKTLTVLYCPTGSMLADLFTKGIPKEQFKKLREL 651          
The following BLAST results are available for this feature:
BLAST of mRNA_H-paniculata_contig19977.5101.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 vs UniRef90)
Total hits: 25
Match NameE-valueIdentityDescription
A0A498M2F0_LABRO5.030e-8230.18Retrovirus-related Pol poly from transposon TNT 1-... [more]
A0A1J3IBS4_NOCCA2.830e-8130.31Retrovirus-related Pol polyprotein from transposon... [more]
A0A151T355_CAJCA1.450e-7929.37Retrovirus-related Pol polyprotein from transposon... [more]
A0A6S7HEL0_PARCT4.960e-7829.83Retrovirus-related Pol poly from transposon TNT 1-... [more]
A0A0K8WJW9_BACLA7.990e-7529.08Retrovirus-related Pol polyprotein from transposon... [more]
A0A7M6DPI8_9CNID1.130e-7328.78Uncharacterized protein n=1 Tax=Clytia hemisphaeri... [more]
A0A5S6QN85_TRIMR2.650e-7230.39Integrase catalytic domain-containing protein n=2 ... [more]
A0A0J7K6W1_LASNI2.280e-7129.03Gag-pol polyprotein n=1 Tax=Lasius niger TaxID=677... [more]
W8C3B0_CERCA4.410e-7128.80Retrovirus-related Pol polyprotein from transposon... [more]
A0A7D9HZ03_PARCT1.280e-7029.68Reverse transcriptase Ty1/copia-type domain-contai... [more]

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Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
H-paniculata_contig19977contigH-paniculata_contig19977:685..3184 -
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 vs UniRef902022-09-19
OGS1.0 of Halopteris paniculata Hal_grac_a_UBK monoicous2021-02-24
Properties
Property NameValue
Taxonomic scopeMetazoa
Seed ortholog score133.3
Seed ortholog evalue2e-28
Seed eggNOG ortholog6334.EFV58419
Hectar predicted targeting categorymitochondrion
EggNOG free text desc.Encoded by
EggNOG OGs38DPC@33154,3BI7U@33208,3CTS1@33213,COG2801@1,KOG0017@2759
COG Functional cat.L
Best tax levelBilateria
Best eggNOG OGNA|NA|NA
Exons5
Model size1986
Cds size930
Stop1
Start1
Relationships

The following UTR feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1622929504.8813224-UTR-H-paniculata_contig19977:684..10591622929504.8813224-UTR-H-paniculata_contig19977:684..1059Halopteris paniculata Hal_grac_a_UBK monoicousUTRH-paniculata_contig19977 685..1059 -
1691480889.8548355-UTR-H-paniculata_contig19977:684..10591691480889.8548355-UTR-H-paniculata_contig19977:684..1059Halopteris paniculata Hal_grac_a_UBK monoicousUTRH-paniculata_contig19977 685..1059 -
1622929504.8934526-UTR-H-paniculata_contig19977:1122..14541622929504.8934526-UTR-H-paniculata_contig19977:1122..1454Halopteris paniculata Hal_grac_a_UBK monoicousUTRH-paniculata_contig19977 1123..1454 -
1691480889.8682046-UTR-H-paniculata_contig19977:1122..14541691480889.8682046-UTR-H-paniculata_contig19977:1122..1454Halopteris paniculata Hal_grac_a_UBK monoicousUTRH-paniculata_contig19977 1123..1454 -
1622929504.910204-UTR-H-paniculata_contig19977:1588..18531622929504.910204-UTR-H-paniculata_contig19977:1588..1853Halopteris paniculata Hal_grac_a_UBK monoicousUTRH-paniculata_contig19977 1589..1853 -
1691480889.875783-UTR-H-paniculata_contig19977:1588..18531691480889.875783-UTR-H-paniculata_contig19977:1588..1853Halopteris paniculata Hal_grac_a_UBK monoicousUTRH-paniculata_contig19977 1589..1853 -
1622929504.9766765-UTR-H-paniculata_contig19977:3100..31841622929504.9766765-UTR-H-paniculata_contig19977:3100..3184Halopteris paniculata Hal_grac_a_UBK monoicousUTRH-paniculata_contig19977 3101..3184 -
1691480889.9055655-UTR-H-paniculata_contig19977:3100..31841691480889.9055655-UTR-H-paniculata_contig19977:3100..3184Halopteris paniculata Hal_grac_a_UBK monoicousUTRH-paniculata_contig19977 3101..3184 -


The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1622929504.9260356-CDS-H-paniculata_contig19977:1853..22681622929504.9260356-CDS-H-paniculata_contig19977:1853..2268Halopteris paniculata Hal_grac_a_UBK monoicousCDSH-paniculata_contig19977 1854..2268 -
1691480889.8834074-CDS-H-paniculata_contig19977:1853..22681691480889.8834074-CDS-H-paniculata_contig19977:1853..2268Halopteris paniculata Hal_grac_a_UBK monoicousCDSH-paniculata_contig19977 1854..2268 -
1622929504.944477-CDS-H-paniculata_contig19977:2402..25551622929504.944477-CDS-H-paniculata_contig19977:2402..2555Halopteris paniculata Hal_grac_a_UBK monoicousCDSH-paniculata_contig19977 2403..2555 -
1691480889.8908062-CDS-H-paniculata_contig19977:2402..25551691480889.8908062-CDS-H-paniculata_contig19977:2402..2555Halopteris paniculata Hal_grac_a_UBK monoicousCDSH-paniculata_contig19977 2403..2555 -
1622929504.9613602-CDS-H-paniculata_contig19977:2738..31001622929504.9613602-CDS-H-paniculata_contig19977:2738..3100Halopteris paniculata Hal_grac_a_UBK monoicousCDSH-paniculata_contig19977 2739..3100 -
1691480889.898234-CDS-H-paniculata_contig19977:2738..31001691480889.898234-CDS-H-paniculata_contig19977:2738..3100Halopteris paniculata Hal_grac_a_UBK monoicousCDSH-paniculata_contig19977 2739..3100 -


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_H-paniculata_contig19977.5101.1prot_H-paniculata_contig19977.5101.1Halopteris paniculata Hal_grac_a_UBK monoicouspolypeptideH-paniculata_contig19977 1854..3100 -


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_H-paniculata_contig19977.5101.1

>prot_H-paniculata_contig19977.5101.1 ID=prot_H-paniculata_contig19977.5101.1|Name=mRNA_H-paniculata_contig19977.5101.1|organism=Halopteris paniculata Hal_grac_a_UBK monoicous|type=polypeptide|length=310bp
MARANMITANKVCRNWAEAVRSAVCCLNRSPTQPHNGGTPYKKWHGETPK
LDHLCVFSYTAYGSSSCSRDASSTTAWAGVLLGHDEDSLIYRTNNPENKS
VQLSRNVKFDEEDFVTGHRGQHGNIGESNGDSTMKDAEPAVEDATSAGTA
APVSRGNTTEPSGTEAQRPRDRSIKGSRGGKWRAAMDKEWGALVENETWE
SKGPGRLLTGRKAIRTKWSFKRELKEDGNVARCKAQIVAQGFSQVEGEDF
IETSAPVAHIPTLCAVFSLAAEYNFELEGMDVDAAYLNARVEQELFVKLP
PEFSLSPET*
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mRNA from alignment at H-paniculata_contig19977:685..3184-

Legend: UTRpolypeptideCDS
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_H-paniculata_contig19977.5101.1 ID=mRNA_H-paniculata_contig19977.5101.1|Name=mRNA_H-paniculata_contig19977.5101.1|organism=Halopteris paniculata Hal_grac_a_UBK monoicous|type=mRNA|length=2500bp|location=Sequence derived from alignment at H-paniculata_contig19977:685..3184- (Halopteris paniculata Hal_grac_a_UBK monoicous)
AATGGCATCAAGCAGGAGTTTTCTACCACCTACATTCCGCAACAAAACGA TGTGGCGGAGCGCAGCCGGCGTAGCATTTTCGAGATGGCAAGAGCCAACA TGATCACCGCCAACAAGGTTTGTCGAAATTGGGCGGAAGCGGTGCGCTCG GCTGTGTGCTGCCTAAATCGCTCCCCGACGCAACCGCACAACGGAGGAAC GCCGTACAAAAAGTGGCACGGCGAGACACCAAAGTTGGACCACCTTTGCG TCTTCAGCTACACGGCGTATGGTAGTTCCAGTTGCAGCAGAGACGCAAGC TCGACGACAGCATGGGCGGGGGTGCTTCTGGGGCACGACGAGGACAGCTT GATATATCGCACAAATAACCCGGAAAACAAGAGCGTCCAGTTGAGCAGGA ACGTGAAATTTGACGAAGAGGACTTCGTAACCGGTCATCGCGGACAGTAG GAGCACGAAGATTGGTTTTCAACACCGCCAGTCATGCCAGCGGTCACTCG ATCCCGCACCCGAGGCGAGCAAGGAAGCGTAACTAACACGGAAGACCAGA CGTCGGCGTCACAAATGCCGCCGATATTGCCGACACATTCGCTACCAGCC GCCAGGGCAAACCAATTCAGTGTCTTGAGGCATGGCAATATTGGCGAAAG TAACGGCGACTCCACGATGAAGGATGCGGAGCCCGCAGTCGAAGACGCAA CATCAGCAGGGACAGCCGCACCCGTCTCGCGGGGGAACACCACGGAGCCG TCAGGCACAGAAGCGCAGCGTCCGCGAGATCGGTCACTAATACTAACACC GGCGAGAGCGAGGGAAAACCACGAAGATCAAGGCGTTACCACGCGCGTGG CAAAAGTGGAAGGCACTGGCAATCTTACAGAGGCGGTATCCAAGGGGGAG CCGAAATTCGCGGCAGAAGCATTAAAGGGTCCAGAGGCGGAAAATGGCGC GCGGCAATGGACAAAGAATGGGGGGCGTTGGTGGAAAATGAAACATGGGA AAGCAAAGGCCCCGGGAGGTTACTGACAGGGCGGAAGGCGATTCGTACGA AATGGAGTTTCAAGCGAGAACTGAAGGAGGATGGCAACGTGGCACGCTGC AAAGCGCAAATAGTGGCTCAAGGCTTTTCACAGGTGGAGGGTGAAGATTT CATTGAAACCAGTGCCCCTGTAGCTCACATACCGACGTTATGTGCTGTTT TTAGCCTGGCCGCCGAATACAATTTCGAATTAGAAGGCATGGACGTAGAT GCGGCGTATTTAAACGCCCGGGTAGAACAAGAGTTGTTTGTTAAGCTACC CCCCGAGTTTTCCCTTTCTCCTGAGACATAAAATTTGTGCGCCGCCTGCG TAAAAGCCTGTACGGCCTTAAGCAGGCGGAATAGCACCCTTGACGATTTT GTTGTTGGAATAGGACTCGACCATTCCACTACCGACTCATGCTTGTACTT TTCTCGCGACGATGGGGGAGAGACAGACCTTCTGGTGGCCATTTATATTG GCGACCTGGTCATTGCTGGCCATCGTGAGAAGGTAGACGAGTTCAAACAT AACATAAATCAGCGTTTTAGGATGAAAGACTTGGGCTCTCTCGCGCGTGT TAGGAATAGAGGTAAGATGTGACTGTCCTAATGGTACCATAACCATCTCG CACGGCAGCTACATCCGCGAGGTACTAAAAAAGGTACATTTTTGACGAGT TTCGAGGGGTATCTACACCTGTAGAGGGAGTGAAAATTTCGGCACCCGAG TCGGCCGACAAGCCCTCCGAACCGAAGTCACTTGGGACTATACTGTCGGA CATAGGCGATGGAATACAAGAAAGCGGCAGAGGGAGAAGTGATAATAGTA TTGAATACAGAGGCATGGTAGGATTACTCATGTACGCCTCCACAGGAACT GCACCTGATATAGCATACGCGGTACACCAAGCAGCACGTCATATGGAGGA CCCGTGTCGGGAAGACTTCGGTATATGCAAGCGCATTTTTCGTTATCTCA GTACTGTGCCTGACCTCGGCATTACGTTCGGGGATAAGAGTAATGGCCAC GGTCCGGAAGGCGTTCATGCCGATTGGGCCGAAGATGTCGAGGGCCGAGA GTCCACAACAGGATACATATTCAAGCTAAACGACGGTGCGATAATGTGGT ACTCTAGGAAGCAACAGTTAGTCATGTGGTCCAGTACAGCGGCAGAGTAC GTTGCTGCAGGAGAAGCGGGAAAGGAGACGGTATATATTGGGGATTTACT AGGATCGATAGGTTTCGGATGTAGGGCGAGCACGACATTGTTTGAGGACA ATAAATCAGCTATTAATCTCAGTAAGGGATCTGGCCCACACTGCAGAATA AAGCACATTGGAGTGCGCGGGCGCGGAATTCGAGAGTGAATTCGGGAACG AGTATTGGCGTTGAAATACGCGCAGACCGGCGACCAACTTGCTGATATTT TAACGAAAGAACTAAGCAGAGTAAAGTTTCAGAGCCTGAGAAATTTACTC
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Coding sequence (CDS) from alignment at H-paniculata_contig19977:685..3184-

>mRNA_H-paniculata_contig19977.5101.1 ID=mRNA_H-paniculata_contig19977.5101.1|Name=mRNA_H-paniculata_contig19977.5101.1|organism=Halopteris paniculata Hal_grac_a_UBK monoicous|type=CDS|length=1860bp|location=Sequence derived from alignment at H-paniculata_contig19977:685..3184- (Halopteris paniculata Hal_grac_a_UBK monoicous)
ATGGCAAGAGCCAACATGATCACCGCCAACAAGGTTTGTCGAAATTGGGC
GGAAGCGGTGCGCTCGGCTGTGTGCTGCCTAAATCGCTCCCCGACGCAAC
CGCACAACGGAGGAACGCCGTACAAAAAGTGGCACGGCGAGACACCAAAG
TTGGACCACCTTTGCGTCTTCAGCTACACGGCGTATGGTAGTTCCAGTTG
CAGCAGAGACGCAAGCTCGACGACAGCATGGGCGGGGGTGCTTCTGGGGC
ACGACGAGGACAGCTTGATATATCGCACAAATAACCCGGAAAACAAGAGC
GTCCAGTTGAGCAGGAACGTGAAATTTGACGAAGAGGACTTCGTAACCGG
TCATCGCGGACAATGGCAAGAGCCAACATGATCACCGCCAACAAGGTTTG
TCGAAATTGGGCGGAAGCGGTGCGCTCGGCTGTGTGCTGCCTAAATCGCT
CCCCGACGCAACCGCACAACGGAGGAACGCCGTACAAAAAGTGGCACGGC
GAGACACCAAAGTTGGACCACCTTTGCGTCTTCAGCTACACGGCGTATGG
TAGTTCCAGTTGCAGCAGAGACGCAAGCTCGACGACAGCATGGGCGGGGG
TGCTTCTGGGGCACGACGAGGACAGCTTGATATATCGCACAAATAACCCG
GAAAACAAGAGCGTCCAGTTGAGCAGGAACGTGAAATTTGACGAAGAGGA
CTTCGTAACCGGTCATCGCGGACAGCATGGCAATATTGGCGAAAGTAACG
GCGACTCCACGATGAAGGATGCGGAGCCCGCAGTCGAAGACGCAACATCA
GCAGGGACAGCCGCACCCGTCTCGCGGGGGAACACCACGGAGCCGTCAGG
CACAGAAGCGCAGCGTCCGCGAGATCGGCATGGCAATATTGGCGAAAGTA
ACGGCGACTCCACGATGAAGGATGCGGAGCCCGCAGTCGAAGACGCAACA
TCAGCAGGGACAGCCGCACCCGTCTCGCGGGGGAACACCACGGAGCCGTC
AGGCACAGAAGCGCAGCGTCCGCGAGATCGAAGCATTAAAGGGTCCAGAG
GCGGAAAATGGCGCGCGGCAATGGACAAAGAATGGGGGGCGTTGGTGGAA
AATGAAACATGGGAAAGCAAAGGCCCCGGGAGGTTACTGACAGGGCGGAA
GGCGATTCGTACGAAATGGAGTTTCAAGCGAGAACTGAAGGAGGATGGCA
ACGTGGCACGCTGCAAAGCGCAAATAGTGGCTCAAGGCTTTTCACAGGTG
GAGGGTGAAGATTTCATTGAAACCAGTGCCCCTGTAGCTCACATACCGAC
GTTATGTGCTGTTTTTAGCCTGGCCGCCGAATACAATTTCGAATTAGAAG
GCATGGACGTAGATGCGGCGTATTTAAACGCCCGGGTAGAACAAGAGTTG
TTTGTTAAGCTACCCCCCGAGTTTTCCCTTTCTCCTGAGACATAAAAGCA
TTAAAGGGTCCAGAGGCGGAAAATGGCGCGCGGCAATGGACAAAGAATGG
GGGGCGTTGGTGGAAAATGAAACATGGGAAAGCAAAGGCCCCGGGAGGTT
ACTGACAGGGCGGAAGGCGATTCGTACGAAATGGAGTTTCAAGCGAGAAC
TGAAGGAGGATGGCAACGTGGCACGCTGCAAAGCGCAAATAGTGGCTCAA
GGCTTTTCACAGGTGGAGGGTGAAGATTTCATTGAAACCAGTGCCCCTGT
AGCTCACATACCGACGTTATGTGCTGTTTTTAGCCTGGCCGCCGAATACA
ATTTCGAATTAGAAGGCATGGACGTAGATGCGGCGTATTTAAACGCCCGG
GTAGAACAAGAGTTGTTTGTTAAGCTACCCCCCGAGTTTTCCCTTTCTCC
TGAGACATAA
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