mRNA_H-paniculata_contig19959.5096.1 (mRNA) Halopteris paniculata Hal_grac_a_UBK monoicous
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Overview
Homology
BLAST of mRNA_H-paniculata_contig19959.5096.1 vs. uniprot
Match: A0A6H5KGS8_9PHAE (Uncharacterized protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5KGS8_9PHAE) HSP 1 Score: 223 bits (568), Expect = 5.760e-66 Identity = 121/309 (39.16%), Postives = 189/309 (61.17%), Query Frame = 1
Query: 1 IGMRWVFKVKADGRFKARLVVQGWSQKHGVKCGSTFAPVCRLESQRLLLALATAKDWTVFALDVQVAFLNGKLKESVFCKQAPGFEKTHPTTGQPYVMRSNHTYIMLSLFVDDILVTGPTDRLLMDVRNKLMNKCTITDLGEVSLILGMEVLRNKQTGTLQLSQHKYVLSVLDRFNISSANPTKTPGVKTDSTTTTSEDSQLLDAAATKEYQAMVGGLIFLTQCTRFDICFSVIQAAHYMSAPTQQHLVAVKRIFRYLQGHPDVPITYSRCEPKLLGYSDASYCT-----LSTTGAMFSLPTDWYTSHL 912
+G ++VFK K DGRFKARLVV G Q+ G G ++APVCR+ S R+ A+ +W ++ LD+ AFLN V+ + APG + TG+P V + ++L+++VDDIL+TG +L+ + +L ++ +TD+GEV ILG++V R+ + GTL +SQ YV ++L+RF + ANP TPG + +T +D Q+L K YQ+M G +++L QCTRFD+ ++ +Q + S P Q ++ A K + RYL+G+P +PI Y R + +L ++D+S+ STTG + SL + W T L
Sbjct: 25 LGTKFVFKKKLDGRFKARLVVGGHRQEPGQDYGRSYAPVCRIGSIRMTCAIGCHNNWPIYQLDIVGAFLNALCDRDVYVRPAPGTSAKNSATGEPMV---GNIIVILTVYVDDILITGGDQQLVDQKKKELTDRFEMTDMGEVKRILGIDVQRDYEQGTLAISQEHYVNTLLERFGMQEANPVSTPGYGAEISTNQPQD-QILGPTDKKIYQSMTGSILYLAQCTRFDLSYAALQLSKACSNPAQVNMTAAKHVLRYLRGNPVLPIVYKRGQFRLAAFTDSSFGANPDNGRSTTGYI-SLLSGWRTHQL 328
BLAST of mRNA_H-paniculata_contig19959.5096.1 vs. uniprot
Match: A0A6H5KE92_9PHAE (Reverse transcriptase Ty1/copia-type domain-containing protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5KE92_9PHAE) HSP 1 Score: 212 bits (540), Expect = 1.140e-57 Identity = 121/341 (35.48%), Postives = 187/341 (54.84%), Query Frame = 1
Query: 1 IGMRWVFKVKADGRFKARLVVQGWSQKHGVKCGSTFAPVCRLESQRLLLALATAKDWTVFALDVQVAFLNGKLKESVFCKQAPGFEKTHPTTGQP-----------------------------------------YVMRSNHTYIMLSLFVDDILVTGPTDRLLMDVRNKLMNKCTITDLGEVSLILGMEVLRNKQTGTLQLSQHKYVLSVLDRFNISSANPTKTPGVKTDSTTTTSEDSQLLDAAATKEYQAMVGGLIFLTQCTRFDICFSVIQAAHYMSAPTQQHLVAVKRIFRYLQGHPDVPITYSRCEPKLLGYSDASYCT-----LSTTGAMFSL 885
+G ++VFK K DGRFKARLVV G Q+ G G ++APVCR+ S R+ A+ +W ++ LDV AFLN V+ + APG + TG+P YV S + ++L+++VDDIL+TG +L+ + +L ++ +TD+GEV ILG++V R+ + GTL +SQ YV ++L+RF + ANP TPG + +T +D Q+L K YQ+M G +++L QCTRFD+ ++ +Q + S P Q ++ A K + RYL+G+P +PI Y R + +L ++D+S+ STTG +F L
Sbjct: 389 LGTKFVFKKKLDGRFKARLVVGGHRQEPGQDYGRSYAPVCRIGSIRMTCAIGCHNNWPIYQLDVVGAFLNALCDRDVYVRPAPGTSAKNSATGEPMVYKLERSLYGLSQSPALWNDTLDESLTVFGWKRTQSDPCVYVYTSGNIIVILTVYVDDILITGGDQQLVDQKKKELTDRFEMTDMGEVKRILGIDVQRDYEQGTLAISQEHYVNTLLERFGMQEANPVSTPGYGAEISTNQPQD-QILGPTDKKIYQSMTGSILYLAQCTRFDLSYAALQLSKACSNPAQVNMTAAKHVLRYLRGNPVLPIVYKRGQFRLAAFTDSSFGANPDNGRSTTGYLFFL 728
BLAST of mRNA_H-paniculata_contig19959.5096.1 vs. uniprot
Match: A0A6H5JF89_9PHAE (Reverse transcriptase Ty1/copia-type domain-containing protein n=3 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5JF89_9PHAE) HSP 1 Score: 210 bits (534), Expect = 1.280e-57 Identity = 120/341 (35.19%), Postives = 186/341 (54.55%), Query Frame = 1
Query: 1 IGMRWVFKVKADGRFKARLVVQGWSQKHGVKCGSTFAPVCRLESQRLLLALATAKDWTVFALDVQVAFLNGKLKESVFCKQAPGFEKTHPTTGQP-----------------------------------------YVMRSNHTYIMLSLFVDDILVTGPTDRLLMDVRNKLMNKCTITDLGEVSLILGMEVLRNKQTGTLQLSQHKYVLSVLDRFNISSANPTKTPGVKTDSTTTTSEDSQLLDAAATKEYQAMVGGLIFLTQCTRFDICFSVIQAAHYMSAPTQQHLVAVKRIFRYLQGHPDVPITYSRCEPKLLGYSDASYCT-----LSTTGAMFSL 885
+G ++VFK DGRFKARLVV G Q+ G G ++APVCR+ S R+ A+ +W ++ LDV AFLN V+ + APG + TG+P YV S + ++L+++VDDIL+TG +L+ + +L ++ +TD+GEV ILG++V R+ + GTL +SQ YV ++L+RF + ANP TPG + +T +D Q+L K YQ+M G +++L QCTRFD+ ++ +Q + S P Q ++ A K + RYL+G+P +PI Y R + +L ++D+S+ STTG +F L
Sbjct: 233 LGTKFVFKKTLDGRFKARLVVGGHRQEPGQDYGRSYAPVCRIGSIRMTCAIGCHNNWPIYQLDVVGAFLNALCDRDVYVRPAPGTSAKNSATGEPMVYKLERSLYGLSQSHALWNDTLDESLTVLGWKRTQSDPCVYVYTSGNIIVILTVYVDDILITGGDQQLVDQKKKELTDRFEMTDMGEVKRILGIDVQRDYEQGTLAISQEHYVNTLLERFGMQEANPVSTPGYGAEISTNQPQD-QILGPTDKKIYQSMAGSILYLAQCTRFDLSYAALQLSKACSNPAQVNMTAAKHVLRYLRGNPVLPIVYKRGQFRLAAFTDSSFGANPDNGRSTTGYLFFL 572
BLAST of mRNA_H-paniculata_contig19959.5096.1 vs. uniprot
Match: A0A6H5KQD0_9PHAE (Reverse transcriptase Ty1/copia-type domain-containing protein n=3 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5KQD0_9PHAE) HSP 1 Score: 204 bits (520), Expect = 3.070e-57 Identity = 119/341 (34.90%), Postives = 185/341 (54.25%), Query Frame = 1
Query: 1 IGMRWVFKVKADGRFKARLVVQGWSQKHGVKCGSTFAPVCRLESQRLLLALATAKDWTVFALDVQVAFLNGKLKESVFCKQAPGFEKTHPTTGQP-----------------------------------------YVMRSNHTYIMLSLFVDDILVTGPTDRLLMDVRNKLMNKCTITDLGEVSLILGMEVLRNKQTGTLQLSQHKYVLSVLDRFNISSANPTKTPGVKTDSTTTTSEDSQLLDAAATKEYQAMVGGLIFLTQCTRFDICFSVIQAAHYMSAPTQQHLVAVKRIFRYLQGHPDVPITYSRCEPKLLGYSDASYCT-----LSTTGAMFSL 885
+G ++VFK K DGRFKARLVV G Q+ G G ++APVCR+ S R+ A+ +W ++ LDV AFLN V+ + APG + TG+P YV S + ++L+++VDDIL+TG +L+ + +L ++ +TD+GEV ILG++V R+ + GTL +SQ YV + L+RF + ANP T G + +T +D Q+L K YQ+M G +++L QCT+FD+ ++ +Q + S P Q ++ A K + RYL+G+P +PI Y R + +L ++D+S+ STTG +F L
Sbjct: 25 LGTKFVFKKKLDGRFKARLVVGGHRQEPGQDYGRSYAPVCRIGSIRMTCAIGCHNNWPIYQLDVVGAFLNALCDRYVYVRPAPGTSAKNSATGEPMVYKLERSLYGLSQSPALWNDTLDESLTVFGWKRTQSDPCVYVYTSGNIIVILTVYVDDILITGGDQQLVDQKKKELTDRFEMTDMGEVKRILGIDVQRDYEQGTLAISQEHYVNTRLERFGMQEANPVSTLGYGAEISTNQPQD-QILGPTDKKIYQSMTGSILYLAQCTQFDLSYAALQLSKACSNPAQVNMTAAKHVLRYLRGNPVLPIVYKRGQFRLAAFTDSSFGANPDNGRSTTGYLFFL 364
BLAST of mRNA_H-paniculata_contig19959.5096.1 vs. uniprot
Match: A0A6H5KY84_9PHAE (Integrase catalytic domain-containing protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5KY84_9PHAE) HSP 1 Score: 212 bits (539), Expect = 7.600e-57 Identity = 117/324 (36.11%), Postives = 179/324 (55.25%), Query Frame = 1
Query: 1 IGMRWVFKVKADGRFKARLVVQGWSQKHGVKCGSTFAPVCRLESQRLLLALATAKDWTVFALDVQVAFLNGKLKESVFCKQAPGFEKTHPTTGQPYVMR-----------------------------------------SNHTYIMLSLFVDDILVTGPTDRLLMDVRNKLMNKCTITDLGEVSLILGMEVLRNKQTGTLQLSQHKYVLSVLDRFNISSANPTKTPGVKTDSTTTTSEDSQLLDAAATKEYQAMVGGLIFLTQCTRFDICFSVIQAAHYMSAPTQQHLVAVKRIFRYLQGHPDVPITYSRCEPKLLGYSDASY 849
IG RW++K+KA G KARL+VQGW Q+HG+ CG T+APV R SQ +L+A+A + + V +DV AFL ++E V+ +QA G+E T TG P VM+ + TY +L ++VDD + G T ++ D++ +L +K +TD G L+LGME+ ++ G + +SQHKYV+++LD++ + P TPG + E++ L K YQ +VG L+FLT TR++I ++V+ M+ PT QH+V KR+ RYL+G PD+P+ + R + L Y DAS+
Sbjct: 937 IGSRWLYKMKATGVMKARLIVQGWGQRHGIDCGGTYAPVSRFSSQLVLMAIAAERGYVVETMDVVTAFLQSNVEEEVYVRQAKGYEITDEVTGLPLVMKLKKSLYGLKQSPRNFGNAFAKGIKEIGFTALLSDPCVYVYGAGPTYAILCVYVDDCTLAGKTPSVVQDLKKQLSDKFKMTDGGPAELLLGMEI--SQSDGEIIVSQHKYVMNILDKYQMVDCKPAATPGSGPE-IEQEPENAIYLSEEDKKLYQGIVGSLLFLTNTTRWEIGYAVMVLCRGMNKPTNQHMVGAKRVLRYLRGCPDMPLKFRRGQWDLKCYCDASF 1257
BLAST of mRNA_H-paniculata_contig19959.5096.1 vs. uniprot
Match: A0A6H5JF46_9PHAE (Reverse transcriptase Ty1/copia-type domain-containing protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5JF46_9PHAE) HSP 1 Score: 206 bits (524), Expect = 5.260e-56 Identity = 121/338 (35.80%), Postives = 179/338 (52.96%), Query Frame = 1
Query: 10 RWVFKVKADGRFKARLVVQGWSQKHGVKCGSTFAPVCRLESQRLLLALATAKDWTVFALDVQVAFLNGKLKESVFCKQAPGFEKTHPTTGQP-----------------------------------------YVMRSNHTYIMLSLFVDDILVTGPTDRLLMDVRNKLMNKCTITDLGEVSLILGMEVLRNKQTGTLQLSQHKYVLSVLDRFNISSANPTKTPGVKTDSTTTTSEDSQLLDAAATKEYQAMVGGLIFLTQCTRFDICFSVIQAAHYMSAPTQQHLVAVKRIFRYLQGHPDVPITYSRCEPKLLGYSDASYCT-----LSTTGAMFSL 885
R+VFK+KAD RFKARLV G Q+ G G +APV RL S R+L A+A W V+ LDV AFLN V+ + APG E+ PTTG+ Y+ S +L+++VDDIL+TG ++ + +LM+ +TD+GEV ++G+EV R+ + GTL +SQ Y +L R+ + ANP TPG + +T +D QLL + +QA+ G L++L QCTR+D+ ++V Q + P Q H+ A K + RYL+G PD+PI Y + + +L ++D+S+ STTG +F L
Sbjct: 269 RFVFKIKADSRFKARLVAGGHRQRAGRHFGRNYAPVTRLGSIRMLFAIACEHGWEVYQLDVVAAFLNAYTDRDVYVRPAPGDEERDPTTGEMMVYKLEKSLYGLSQSPSLWNDAINDRLIIFGWQRTRSDPCVYIFVSGDELTILAIYVDDILITGGNKEIVSRKKKELMDSFEMTDMGEVKRVIGIEVQRDYEHGTLAISQGPYARDILQRYGMEQANPVSTPGYGVELSTEQPQD-QLLGPEDKQRFQAITGSLLYLAQCTRYDLSYAVHQLTRACANPAQVHMAAAKHLLRYLRGTPDLPIVYKKGKFRLSCFTDSSFGANPDNGRSTTGYLFFL 605
BLAST of mRNA_H-paniculata_contig19959.5096.1 vs. uniprot
Match: A0A6H5JDU8_9PHAE (Reverse transcriptase Ty1/copia-type domain-containing protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5JDU8_9PHAE) HSP 1 Score: 202 bits (515), Expect = 5.450e-56 Identity = 121/341 (35.48%), Postives = 185/341 (54.25%), Query Frame = 1
Query: 1 IGMRWVFKVKADGRFKARLVVQGWSQKHGVKCGSTFAPVCRLESQRLLLALATAKDWTVFALDVQVAFLNGKLKESVFCKQAPGFEKTHPTTGQP-----------------------------------------YVMRSNHTYIMLSLFVDDILVTGPTDRLLMDVRNKLMNKCTITDLGEVSLILGMEVLRNKQTGTLQLSQHKYVLSVLDRFNISSANPTKTPGVKTDSTTTTSEDSQLLDAAATKEYQAMVGGLIFLTQCTRFDICFSVIQAAHYMSAPTQQHLVAVKRIFRYLQGHPDVPITYSRCEPKLLGYSDASYCT-----LSTTGAMFSL 885
+G ++VFK K DGRFKA LVV G Q+ G GS++APVCR+ S R+ + +W ++ LDV VAFLN V+ + APG + TG+P Y+ S + ++L+++VDDIL+TG D+ L+D + +L ++ +TD+GEV ILG++V R+ + GTL +SQ YV ++L+RF + ANP T G + +T +D Q+L K YQ+M +++L QCTRFD+ ++ +Q + S P Q +L A K + RYL+G+P +PI Y R + L +D+S+ STTG +F L
Sbjct: 126 LGTKFVFKKKLDGRFKAHLVVGGHRQEPGQDYGSSYAPVCRIGSIRMTCTIGCHNNWPIYQLDVVVAFLNALCDRDVYVRPAPGTSAKNSATGEPMVYKLERSLYGLSQSPALWNDTLNESLKVFGWKRTQYDPCVYMYTSGNIIVILTVYVDDILITGG-DQQLVDQKKELTDRFEMTDMGEVKRILGIDVQRDYEQGTLAISQEYYVNTLLERFGMQEANPVSTLGYGAEISTNQPQD-QILGPTDKKIYQSMTRSILYLAQCTRFDLSYAALQLSKACSNPAQVNLTAAKHVLRYLRGNPVLPIVYKRGQFWLAASTDSSFGANLDNGRSTTGYLFFL 464
BLAST of mRNA_H-paniculata_contig19959.5096.1 vs. uniprot
Match: A0A6H5KJH6_9PHAE (Uncharacterized protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5KJH6_9PHAE) HSP 1 Score: 208 bits (529), Expect = 1.780e-55 Identity = 120/330 (36.36%), Postives = 175/330 (53.03%), Query Frame = 1
Query: 1 IGMRWVFKVKADGRFKARLVVQGWSQKHGVKCGSTFAPVCRLESQRLLLALATAKDWTVFALDVQVAFLNGKLKESVFCKQAPGFEKTHPTTGQP----------------------------------------YVMRSNHTYIMLSLFVDDILVTGPTDRLLMDVRNKLMNKCTITDLGEVSLILGMEVLRNKQTGTLQLSQHKYVLSVLDRFNISSANPTKTPGVKTDSTTTTSEDSQLLDAAATKEYQAMVGGLIFLTQCTRFDICFSVIQAAHYMSAPTQQHLVAVKRIFRYLQGHPDVPITYSRCEPKLLGYSDASYCTLSTTG 870
I +WVFK KADG FK R+V QGW+Q G+ CGST+APVCR++S R++ + + +DV AFL ++E VF +Q PGFE G Y+ N I L+L+VDD+L+ G + V+ KL + +TDLGE SL+LGME+ R+++ TL +SQ Y S+L+RF IS + PT TPG ++ + ED+ LLD T++YQ +VG L+++ Q R+DI ++ Q A M+ P++ H+VA K RYL G D ITY + KL +SD+++ G
Sbjct: 1198 IKSKWVFKRKADGTFKGRVVAQGWNQVPGLDCGSTYAPVCRIQSVRMVACITVEFNLIFDQMDVSTAFLYADIQEEVFVEQPPGFEVKDKDGGDMVMKLNKSLYGLAQSPGNWFNTIDPVLVEIGFVALKSDPCVYLYDHNGAKIYLTLYVDDLLLAGNDSDAISMVKGKLQKRFKMTDLGEASLVLGMEIRRDREANTLTISQEAYCKSILERFGISGSKPTSTPGYGSEISNIQPEDT-LLDEKETRKYQGIVGSLMYIAQVLRYDIMYATGQLARPMAKPSKVHMVAAKHTLRYLAGTIDFSITYKKGGFKLATFSDSNWANNPDNG 1526
BLAST of mRNA_H-paniculata_contig19959.5096.1 vs. uniprot
Match: A0A6H5KDK0_9PHAE (Reverse transcriptase Ty1/copia-type domain-containing protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5KDK0_9PHAE) HSP 1 Score: 198 bits (503), Expect = 1.860e-54 Identity = 114/324 (35.19%), Postives = 176/324 (54.32%), Query Frame = 1
Query: 1 IGMRWVFKVKADGRFKARLVVQGWSQKHGVKCGSTFAPVCRLESQRLLLALATAKDWTVFALDVQVAFLNGKLKESVFCKQAPGFEKTHPTTGQP------------------------YVMRSNHTYIMLSLFVDDILVTGPTDRLLMDVRNKLMNKCTITDLGEVSLILGMEVLRNKQTGTLQLSQHKYVLSVLDRFNISSANPTKTPGVKTDSTTTTSEDSQLLDAAATKEYQAMVGGLIFLTQCTRFDICFSVIQAAHYMSAPTQQHLVAVKRIFRYLQGHPDVPITYSRCEPKLLGYSDASYCT-----LSTTGAMFSL 885
+G ++VFK DGRFKARLVV G+ Q+ G G ++APVCR+ R+ A+ +W ++ LDV AFLN V+ + APG + TG+P YV S + ++L+++VDDIL+TG +L+ + +L ++ +TD+GEV ILG++V R+ + GTL +SQ YV ++L+RF + ANP Q+L K YQ+M G ++ L QCTRFD+ ++ +Q + S P Q ++ A K RYL+G+P +PI Y R + +L ++D+S+ STTG +F L
Sbjct: 25 LGTKFVFKKDLDGRFKARLVVGGYRQEPGQDYGRSYAPVCRIGGIRMTCAIGCHHNWPIYQLDVVGAFLNALCDRDVYVRPAPGTSAKNSATGEPMVYKLERSLYGLSQWKRTQSDPCVYVYTSGNIIVILTVYVDDILITGGDQQLVDQKKKELTDRFEMTDMGEVKRILGIDVQRDYEQGTLAISQEHYVNTLLERFGMQEANP-----------------DQILGPTDKKIYQSMTGSILNLAQCTRFDLSYAALQLSKACSNPAQVNMTAAKHDVRYLRGNPVLPIVYKRGQFRLAAFTDSSFGANPDNGRSTTGYLFFL 331
BLAST of mRNA_H-paniculata_contig19959.5096.1 vs. uniprot
Match: A0A6H5KL37_9PHAE (Integrase catalytic domain-containing protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5KL37_9PHAE) HSP 1 Score: 198 bits (503), Expect = 1.380e-52 Identity = 116/332 (34.94%), Postives = 169/332 (50.90%), Query Frame = 1
Query: 1 IGMRWVFKVKADGRFKARLVVQGWSQKHGVKCGSTFAPVCRLESQRLLLALATAKDWTVFALDVQVAFLNGKLKESVFCKQAPGFEKTHPTTGQ----------------------------------------PYVMRSNHTYIMLSLFVDDILVTGPTDRLLMDVRNKLMNKCTITDLGEVSLILGMEVLRNKQTGTLQLSQHKYVLSVLDRFNISSANPTKTPGVKTDSTTTTSEDSQLLDAAATKEYQAMVGGLIFLTQCTRFDICFSVIQAAHYMSAPTQQHLVAVKRIFRYLQGHPDVPITYSRCEPKLLGYSDASYCTLSTTGAM 876
I +WVFK KA G FK RLV QGW+Q G+ CG+T+APVCR +S R+L +A + + +DV AFL + E+VF +Q PGFE G Y+ + + L+L+VDD+L+ G R + ++ KL + +TD+GEV L+LGME+ R++ GTL +SQ Y S+L+RF +S PT TPG ++ + ED+ LL T+ YQ +VG LI++ Q R+DI ++ Q M+ P++ H+VA K RY+ G D ITY +S A CT G +
Sbjct: 506 IKSKWVFKRKAGGSFKGRLVAQGWNQVPGLDCGNTYAPVCRFQSIRMLACIAVQFNLELDQMDVSTAFLYADILENVFVEQPPGFEVKDKDGGDLVMQLQKSLYGLAQSPSNWFHTIDPFLVEIGFVPLKSDTCVYLYDHDDVQVYLTLYVDDLLLAGNNSRAISMIKKKLTQRFKMTDMGEVKLVLGMEIKRDRNQGTLTISQEAYSKSILERFGMSECKPTSTPGYGSELSNKQPEDT-LLSEEETRRYQGIVGCLIYIAQVLRYDIMYATGQLTRPMAKPSKIHMVAAKHTLRYVAGTTDFRITYGPFGQIFKIFSPAQRCTFLGVGVL 836 The following BLAST results are available for this feature:
BLAST of mRNA_H-paniculata_contig19959.5096.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 vs UniRef90) Total hits: 25
Pagesback to topAlignments
The following features are aligned
Analyses
This mRNA is derived from or has results from the following analyses
Properties
Relationships
The following polypeptide feature(s) derives from this mRNA:
The following UTR feature(s) are a part of this mRNA:
The following CDS feature(s) are a part of this mRNA:
Sequences
The following sequences are available for this feature:
protein sequence of mRNA_H-paniculata_contig19959.5096.1 >prot_H-paniculata_contig19959.5096.1 ID=prot_H-paniculata_contig19959.5096.1|Name=mRNA_H-paniculata_contig19959.5096.1|organism=Halopteris paniculata Hal_grac_a_UBK monoicous|type=polypeptide|length=307bp MRWVFKVKADGRFKARLVVQGWSQKHGVKCGSTFAPVCRLESQRLLLALAback to top mRNA from alignment at H-paniculata_contig19959:2332..3707+ Legend: UTRpolypeptideCDS Hold the cursor over a type above to highlight its positions in the sequence below.>mRNA_H-paniculata_contig19959.5096.1 ID=mRNA_H-paniculata_contig19959.5096.1|Name=mRNA_H-paniculata_contig19959.5096.1|organism=Halopteris paniculata Hal_grac_a_UBK monoicous|type=mRNA|length=1376bp|location=Sequence derived from alignment at H-paniculata_contig19959:2332..3707+ (Halopteris paniculata Hal_grac_a_UBK monoicous)back to top Coding sequence (CDS) from alignment at H-paniculata_contig19959:2332..3707+ >mRNA_H-paniculata_contig19959.5096.1 ID=mRNA_H-paniculata_contig19959.5096.1|Name=mRNA_H-paniculata_contig19959.5096.1|organism=Halopteris paniculata Hal_grac_a_UBK monoicous|type=CDS|length=1842bp|location=Sequence derived from alignment at H-paniculata_contig19959:2332..3707+ (Halopteris paniculata Hal_grac_a_UBK monoicous)back to top |