mRNA_H-paniculata_contig19954.5095.1 (mRNA) Halopteris paniculata Hal_grac_a_UBK monoicous

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_H-paniculata_contig19954.5095.1
Unique NamemRNA_H-paniculata_contig19954.5095.1
TypemRNA
OrganismHalopteris paniculata Hal_grac_a_UBK monoicous (Halopteris paniculata Hal_grac_a_UBK monoicous)
Homology
BLAST of mRNA_H-paniculata_contig19954.5095.1 vs. uniprot
Match: A0A396JJF4_MEDTR (Putative RNA-directed DNA polymerase n=3 Tax=Medicago truncatula TaxID=3880 RepID=A0A396JJF4_MEDTR)

HSP 1 Score: 90.9 bits (224), Expect = 4.280e-19
Identity = 47/106 (44.34%), Postives = 65/106 (61.32%), Query Frame = 1
Query:    1 ERLYVDLGGPMRVASLGGSSYVIITVDDYSRFQAVKFIKKMSDATAALLSYIAEYITPKGLKIGAIHADNRGRFDGD-FRVKLDEHGISHELTPPDTPQYNGVFER 315
            E L++DL GP+  ASL GS Y ++ VDDYSR+  VKFIK    A     S+  +  + K LKI  + +D+ G F+ + F +  ++HGI HE + P TPQ NGV ER
Sbjct:  853 ELLHIDLFGPVNTASLYGSKYGLVIVDDYSRWTWVKFIKSKDYACEVFSSFCTQIQSEKELKILKVRSDHGGEFENEPFELFCEKHGILHEFSSPRTPQQNGVVER 958          
BLAST of mRNA_H-paniculata_contig19954.5095.1 vs. uniprot
Match: A0A5D3CS19_CUCME (Gag-pol polyprotein n=1 Tax=Cucumis melo var. makuwa TaxID=1194695 RepID=A0A5D3CS19_CUCME)

HSP 1 Score: 87.8 bits (216), Expect = 5.050e-18
Identity = 49/106 (46.23%), Postives = 59/106 (55.66%), Query Frame = 1
Query:    1 ERLYVDLGGPMRVASLGGSSYVIITVDDYSRFQAVKFIKKMSDATAALLSYIAEYITPKGLKIGAIHADNRGRFDG-DFRVKLDEHGISHELTPPDTPQYNGVFER 315
            E L++DL GPM+  SLGG  YV++ VDDYSRF  V+F+K  SD     +S        KG KI  I +D+   FD  D        GI HEL  P TPQ NGV ER
Sbjct:  461 ELLHLDLMGPMQTESLGGKKYVLVVVDDYSRFTWVEFLKGKSDTGKLCISLCLNLQHEKGQKIIRIRSDHEKEFDNEDLNNFCQIEGIHHELAAPITPQQNGVVER 566          
BLAST of mRNA_H-paniculata_contig19954.5095.1 vs. uniprot
Match: A0A699R842_TANCI (Putative ribonuclease H-like domain-containing protein (Fragment) n=1 Tax=Tanacetum cinerariifolium TaxID=118510 RepID=A0A699R842_TANCI)

HSP 1 Score: 82.4 bits (202), Expect = 2.440e-17
Identity = 39/104 (37.50%), Postives = 61/104 (58.65%), Query Frame = 1
Query:    7 LYVDLGGPMRVASLGGSSYVIITVDDYSRFQAVKFIKKMSDATAALLSYIAEYITPKGLKIGAIHADNRGRFDGD-FRVKLDEHGISHELTPPDTPQYNGVFER 315
            L++DL GPMR+AS+ G  Y+++ VDDYSR+  V+F++   +AT  +++++          +  I  DN   F     +V  D  GISH+++   TPQ NGV ER
Sbjct:   64 LHMDLCGPMRIASINGKRYILVIVDDYSRYTWVRFLRSKDEATEVIITFLKRITVLLQSPVIIIRTDNGTEFKNQVLKVYFDSVGISHQMSSVQTPQQNGVVER 167          
BLAST of mRNA_H-paniculata_contig19954.5095.1 vs. uniprot
Match: A0A5D3DQT9_CUCME (Gag/pol polyprotein n=1 Tax=Cucumis melo var. makuwa TaxID=1194695 RepID=A0A5D3DQT9_CUCME)

HSP 1 Score: 85.5 bits (210), Expect = 3.220e-17
Identity = 47/106 (44.34%), Postives = 57/106 (53.77%), Query Frame = 1
Query:    1 ERLYVDLGGPMRVASLGGSSYVIITVDDYSRFQAVKFIKKMSDATAALLSYIAEYITPKGLKIGAIHADNRGRFDG-DFRVKLDEHGISHELTPPDTPQYNGVFER 315
            E L++DL GPM+  SLG   YV++ VDDYSRF  V+F+K  SD     +S        KG KI  I +D+   FD  D        GI HE   P TPQ NGV ER
Sbjct:  343 ELLHLDLIGPMKTESLGRKKYVLVVVDDYSRFTRVRFLKGKSDTVKLCISLYLNLQREKGQKIIRIRSDHGKEFDNEDLNNFCQTEGIHHEFVAPITPQQNGVVER 448          
BLAST of mRNA_H-paniculata_contig19954.5095.1 vs. uniprot
Match: A0A151SK87_CAJCA (Retrovirus-related Pol polyprotein from transposon TNT 1-94 n=2 Tax=Cajanus cajan TaxID=3821 RepID=A0A151SK87_CAJCA)

HSP 1 Score: 85.5 bits (210), Expect = 3.320e-17
Identity = 44/106 (41.51%), Postives = 62/106 (58.49%), Query Frame = 1
Query:    1 ERLYVDLGGPMRVASLGGSSYVIITVDDYSRFQAVKFIKKMSDATAALLSYIAEYITPKGLKIGAIHADNRGRFDGD-FRVKLDEHGISHELTPPDTPQYNGVFER 315
            E L++DL GP R  SLGG++Y ++ +DDYSRF  V FI    +A  A           K LKI ++ +D+ G F  + F+   +E+GI+H  + P TPQ NGV ER
Sbjct:  712 ELLHMDLFGPSRTKSLGGNTYALVLIDDYSRFTWVAFISHKDNAFKAFRIISKRIQNEKDLKIKSLRSDHGGEFQNESFQTFCEENGINHNFSVPRTPQQNGVVER 817          
BLAST of mRNA_H-paniculata_contig19954.5095.1 vs. uniprot
Match: A0A5D3BZJ1_CUCME (Peptidase aspartic, catalytic n=1 Tax=Cucumis melo var. makuwa TaxID=1194695 RepID=A0A5D3BZJ1_CUCME)

HSP 1 Score: 80.9 bits (198), Expect = 7.970e-17
Identity = 45/105 (42.86%), Postives = 55/105 (52.38%), Query Frame = 1
Query:    1 ERLYVDLGGPMRVASLGGSSYVIITVDDYSRFQAVKFIKKMSDATAALLSYIAEYITPKGLKIGAIHADNRGRFDG-DFRVKLDEHGISHELTPPDTPQYNGVFE 312
            E L++DL  PM+  SLGG  YV++ VDDYSRF  V+F+K   D     +S        K  KI  IH+D+   FD  D        GI HE   P TPQ NGV E
Sbjct:   84 ELLHLDLMDPMQTESLGGKKYVLVVVDDYSRFTWVRFLKGKLDTVKLCISLCLNLQREKRQKIIRIHSDHGKEFDNEDLNNFCQTEGIHHEFAAPITPQQNGVVE 188          
BLAST of mRNA_H-paniculata_contig19954.5095.1 vs. uniprot
Match: A0A5D3E4L4_CUCME (Gag-pol polyprotein n=1 Tax=Cucumis melo var. makuwa TaxID=1194695 RepID=A0A5D3E4L4_CUCME)

HSP 1 Score: 84.3 bits (207), Expect = 8.200e-17
Identity = 46/102 (45.10%), Postives = 55/102 (53.92%), Query Frame = 1
Query:   13 VDLGGPMRVASLGGSSYVIITVDDYSRFQAVKFIKKMSDATAALLSYIAEYITPKGLKIGAIHADNRGRFDG-DFRVKLDEHGISHELTPPDTPQYNGVFER 315
            +D+ GPM+  SLGG  YV++ VDDYSRF  V F+K  SD     +S        KG KI  I +D+   FD  D        GI HE T P TPQ NGV ER
Sbjct:  336 LDINGPMQTESLGGKKYVLVVVDDYSRFTWVPFLKGKSDTVKLCISLCLNLQGEKGQKIIRIRSDHGKEFDNEDLNNFCQPKGIHHEFTAPITPQQNGVVER 437          
BLAST of mRNA_H-paniculata_contig19954.5095.1 vs. uniprot
Match: A0A5D3BA69_CUCME (Gag-pol polyprotein n=1 Tax=Cucumis melo var. makuwa TaxID=1194695 RepID=A0A5D3BA69_CUCME)

HSP 1 Score: 84.0 bits (206), Expect = 1.100e-16
Identity = 45/106 (42.45%), Postives = 58/106 (54.72%), Query Frame = 1
Query:    1 ERLYVDLGGPMRVASLGGSSYVIITVDDYSRFQAVKFIKKMSDATAALLSYIAEYITPKGLKIGAIHADNRGRFDG-DFRVKLDEHGISHELTPPDTPQYNGVFER 315
            E L+++L GPM+  SLGG  YV++ VDDYS+F  V+F+K+  D     +S        KG KI  I +D+   FD  D        GI HE   P TPQ NGV ER
Sbjct:  311 ELLHLNLMGPMQTESLGGKKYVLVVVDDYSKFTWVRFLKEKFDTVKLCISLCLNLQREKGQKIIRIRSDHGKEFDNEDLNNLCQTEGIHHEFAAPITPQQNGVVER 416          
BLAST of mRNA_H-paniculata_contig19954.5095.1 vs. uniprot
Match: W8AQ86_CERCA (Retrovirus-related Pol polyprotein from transposon TNT 1-94 n=1 Tax=Ceratitis capitata TaxID=7213 RepID=W8AQ86_CERCA)

HSP 1 Score: 84.0 bits (206), Expect = 1.150e-16
Identity = 44/106 (41.51%), Postives = 62/106 (58.49%), Query Frame = 1
Query:    1 ERLYVDLGGPMRVASLGGSSYVIITVDDYSRFQAVKFIKKMSDATAALLSYIAEYITPKGLKIGAIHADNRGRF-DGDFRVKLDEHGISHELTPPDTPQYNGVFER 315
            E ++ DL GPM + S+GG+SY +  +DDYSR+ AV FIK+ S+A      + A      G KI ++ +DN   F + +F   L E GI H+ T   +PQ NGV ER
Sbjct:  479 ELVHTDLCGPMGIGSVGGASYFVTFIDDYSRYTAVYFIKRKSEALNMFKLFTASAEKQTGRKIKSVRSDNGREFVNSEFEKYLSERGIRHQTTVAYSPQQNGVAER 584          
BLAST of mRNA_H-paniculata_contig19954.5095.1 vs. uniprot
Match: UPI0011DF2343 (uncharacterized protein LOC115720458 n=1 Tax=Cannabis sativa TaxID=3483 RepID=UPI0011DF2343)

HSP 1 Score: 84.0 bits (206), Expect = 1.150e-16
Identity = 45/109 (41.28%), Postives = 64/109 (58.72%), Query Frame = 1
Query:    1 ERLYVDLGGPMRVASLGGSSYVIITVDDYSRFQAVKFIKKMSDATAALLSYIAEYITPKGLKIGAIH---ADNRGRFDGD-FRVKLDEHGISHELTPPDTPQYNGVFER 315
            E L+VDL GPM+ AS+ G  YV++ VDD+SRF  V F+K+ SD   A  S   +    K   IG ++   +D+   F+ + F    D+ GI+HE + P TPQ NG+ ER
Sbjct:  958 ELLHVDLMGPMQTASIAGKRYVMVCVDDFSRFTWVNFLKEKSDTFGAFSSLCLKLQNEKDATIGKVYRVRSDHGKEFENEIFAQFCDKMGINHEFSAPKTPQQNGIVER 1066          
The following BLAST results are available for this feature:
BLAST of mRNA_H-paniculata_contig19954.5095.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 vs UniRef90)
Total hits: 25
Match NameE-valueIdentityDescription
A0A396JJF4_MEDTR4.280e-1944.34Putative RNA-directed DNA polymerase n=3 Tax=Medic... [more]
A0A5D3CS19_CUCME5.050e-1846.23Gag-pol polyprotein n=1 Tax=Cucumis melo var. maku... [more]
A0A699R842_TANCI2.440e-1737.50Putative ribonuclease H-like domain-containing pro... [more]
A0A5D3DQT9_CUCME3.220e-1744.34Gag/pol polyprotein n=1 Tax=Cucumis melo var. maku... [more]
A0A151SK87_CAJCA3.320e-1741.51Retrovirus-related Pol polyprotein from transposon... [more]
A0A5D3BZJ1_CUCME7.970e-1742.86Peptidase aspartic, catalytic n=1 Tax=Cucumis melo... [more]
A0A5D3E4L4_CUCME8.200e-1745.10Gag-pol polyprotein n=1 Tax=Cucumis melo var. maku... [more]
A0A5D3BA69_CUCME1.100e-1642.45Gag-pol polyprotein n=1 Tax=Cucumis melo var. maku... [more]
W8AQ86_CERCA1.150e-1641.51Retrovirus-related Pol polyprotein from transposon... [more]
UPI0011DF23431.150e-1641.28uncharacterized protein LOC115720458 n=1 Tax=Canna... [more]

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Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
H-paniculata_contig19954contigH-paniculata_contig19954:3659..3973 +
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 vs UniRef902022-09-19
OGS1.0 of Halopteris paniculata Hal_grac_a_UBK monoicous2021-02-24
Properties
Property NameValue
Taxonomic scopeViridiplantae
Seed ortholog score76.6
Seed ortholog evalue6.8e-12
Seed eggNOG ortholog28532.XP_010520710.1
Hectar predicted targeting categoryother localisation
EggNOG free text desc.GAG-pre-integrase domain
EggNOG OGs37SNQ@33090,3GHRQ@35493,3HVU8@3699,COG2801@1,KOG0017@2759,KOG1334@1,KOG1334@2759
COG Functional cat.L
Best tax levelBrassicales
Best eggNOG OGNA|NA|NA
Exons1
Model size315
Cds size285
Stop0
Start1
Relationships

The following UTR feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1622929504.2311485-UTR-H-paniculata_contig19954:3658..36881622929504.2311485-UTR-H-paniculata_contig19954:3658..3688Halopteris paniculata Hal_grac_a_UBK monoicousUTRH-paniculata_contig19954 3659..3688 +
1691480889.537775-UTR-H-paniculata_contig19954:3658..36881691480889.537775-UTR-H-paniculata_contig19954:3658..3688Halopteris paniculata Hal_grac_a_UBK monoicousUTRH-paniculata_contig19954 3659..3688 +


The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1622929504.247585-CDS-H-paniculata_contig19954:3688..39731622929504.247585-CDS-H-paniculata_contig19954:3688..3973Halopteris paniculata Hal_grac_a_UBK monoicousCDSH-paniculata_contig19954 3689..3973 +
1691480889.5468996-CDS-H-paniculata_contig19954:3688..39731691480889.5468996-CDS-H-paniculata_contig19954:3688..3973Halopteris paniculata Hal_grac_a_UBK monoicousCDSH-paniculata_contig19954 3689..3973 +


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_H-paniculata_contig19954.5095.1prot_H-paniculata_contig19954.5095.1Halopteris paniculata Hal_grac_a_UBK monoicouspolypeptideH-paniculata_contig19954 3689..3973 +


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_H-paniculata_contig19954.5095.1

>prot_H-paniculata_contig19954.5095.1 ID=prot_H-paniculata_contig19954.5095.1|Name=mRNA_H-paniculata_contig19954.5095.1|organism=Halopteris paniculata Hal_grac_a_UBK monoicous|type=polypeptide|length=95bp
MRVASLGGSSYVIITVDDYSRFQAVKFIKKMSDATAALLSYIAEYITPKG
LKIGAIHADNRGRFDGDFRVKLDEHGISHELTPPDTPQYNGVFER
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mRNA from alignment at H-paniculata_contig19954:3659..3973+

Legend: UTRpolypeptideCDS
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_H-paniculata_contig19954.5095.1 ID=mRNA_H-paniculata_contig19954.5095.1|Name=mRNA_H-paniculata_contig19954.5095.1|organism=Halopteris paniculata Hal_grac_a_UBK monoicous|type=mRNA|length=315bp|location=Sequence derived from alignment at H-paniculata_contig19954:3659..3973+ (Halopteris paniculata Hal_grac_a_UBK monoicous)
GAGCGCCTATACGTCGACCTGGGCGGACCCATGCGAGTAGCCAGCTTGGG CGGTAGCTCGTATGTGATCATCACCGTCGACGACTACTCACGGTTCCAGG CTGTCAAGTTCATCAAGAAGATGAGCGATGCCACTGCAGCTCTTCTGAGC TACATCGCCGAATACATCACGCCGAAGGGACTCAAGATCGGCGCCATTCA TGCGGACAACCGCGGGAGGTTCGATGGCGATTTTCGCGTCAAGCTGGACG AGCACGGCATTAGTCACGAGCTCACACCGCCGGACACGCCGCAATACAAC GGTGTTTTCGAAAGG
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Coding sequence (CDS) from alignment at H-paniculata_contig19954:3659..3973+

>mRNA_H-paniculata_contig19954.5095.1 ID=mRNA_H-paniculata_contig19954.5095.1|Name=mRNA_H-paniculata_contig19954.5095.1|organism=Halopteris paniculata Hal_grac_a_UBK monoicous|type=CDS|length=570bp|location=Sequence derived from alignment at H-paniculata_contig19954:3659..3973+ (Halopteris paniculata Hal_grac_a_UBK monoicous)
ATGCGAGTAGCCAGCTTGGGCGGTAGCTCGTATGTGATCATCACCGTCGA
CGACTACTCACGGTTCCAGGCTGTCAAGTTCATCAAGAAGATGAGCGATG
CCACTGCAGCTCTTCTGAGCTACATCGCCGAATACATCACGCCGAAGGGA
CTCAAGATCGGCGCCATTCATGCGGACAACCGCGGGAGGTTCGATGGCGA
TTTTCGCGTCAAGCTGGACGAGCACGGCATTAGTCACGAGCTCACACCGC
CGGACACGCCGCAATACAACGGTGTTTTCGAAAGGATGCGAGTAGCCAGC
TTGGGCGGTAGCTCGTATGTGATCATCACCGTCGACGACTACTCACGGTT
CCAGGCTGTCAAGTTCATCAAGAAGATGAGCGATGCCACTGCAGCTCTTC
TGAGCTACATCGCCGAATACATCACGCCGAAGGGACTCAAGATCGGCGCC
ATTCATGCGGACAACCGCGGGAGGTTCGATGGCGATTTTCGCGTCAAGCT
GGACGAGCACGGCATTAGTCACGAGCTCACACCGCCGGACACGCCGCAAT
ACAACGGTGTTTTCGAAAGG
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