mRNA_H-paniculata_contig19954.5095.1 (mRNA) Halopteris paniculata Hal_grac_a_UBK monoicous
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Overview
Homology
BLAST of mRNA_H-paniculata_contig19954.5095.1 vs. uniprot
Match: A0A396JJF4_MEDTR (Putative RNA-directed DNA polymerase n=3 Tax=Medicago truncatula TaxID=3880 RepID=A0A396JJF4_MEDTR) HSP 1 Score: 90.9 bits (224), Expect = 4.280e-19 Identity = 47/106 (44.34%), Postives = 65/106 (61.32%), Query Frame = 1
Query: 1 ERLYVDLGGPMRVASLGGSSYVIITVDDYSRFQAVKFIKKMSDATAALLSYIAEYITPKGLKIGAIHADNRGRFDGD-FRVKLDEHGISHELTPPDTPQYNGVFER 315
E L++DL GP+ ASL GS Y ++ VDDYSR+ VKFIK A S+ + + K LKI + +D+ G F+ + F + ++HGI HE + P TPQ NGV ER
Sbjct: 853 ELLHIDLFGPVNTASLYGSKYGLVIVDDYSRWTWVKFIKSKDYACEVFSSFCTQIQSEKELKILKVRSDHGGEFENEPFELFCEKHGILHEFSSPRTPQQNGVVER 958
BLAST of mRNA_H-paniculata_contig19954.5095.1 vs. uniprot
Match: A0A5D3CS19_CUCME (Gag-pol polyprotein n=1 Tax=Cucumis melo var. makuwa TaxID=1194695 RepID=A0A5D3CS19_CUCME) HSP 1 Score: 87.8 bits (216), Expect = 5.050e-18 Identity = 49/106 (46.23%), Postives = 59/106 (55.66%), Query Frame = 1
Query: 1 ERLYVDLGGPMRVASLGGSSYVIITVDDYSRFQAVKFIKKMSDATAALLSYIAEYITPKGLKIGAIHADNRGRFDG-DFRVKLDEHGISHELTPPDTPQYNGVFER 315
E L++DL GPM+ SLGG YV++ VDDYSRF V+F+K SD +S KG KI I +D+ FD D GI HEL P TPQ NGV ER
Sbjct: 461 ELLHLDLMGPMQTESLGGKKYVLVVVDDYSRFTWVEFLKGKSDTGKLCISLCLNLQHEKGQKIIRIRSDHEKEFDNEDLNNFCQIEGIHHELAAPITPQQNGVVER 566
BLAST of mRNA_H-paniculata_contig19954.5095.1 vs. uniprot
Match: A0A699R842_TANCI (Putative ribonuclease H-like domain-containing protein (Fragment) n=1 Tax=Tanacetum cinerariifolium TaxID=118510 RepID=A0A699R842_TANCI) HSP 1 Score: 82.4 bits (202), Expect = 2.440e-17 Identity = 39/104 (37.50%), Postives = 61/104 (58.65%), Query Frame = 1
Query: 7 LYVDLGGPMRVASLGGSSYVIITVDDYSRFQAVKFIKKMSDATAALLSYIAEYITPKGLKIGAIHADNRGRFDGD-FRVKLDEHGISHELTPPDTPQYNGVFER 315
L++DL GPMR+AS+ G Y+++ VDDYSR+ V+F++ +AT +++++ + I DN F +V D GISH+++ TPQ NGV ER
Sbjct: 64 LHMDLCGPMRIASINGKRYILVIVDDYSRYTWVRFLRSKDEATEVIITFLKRITVLLQSPVIIIRTDNGTEFKNQVLKVYFDSVGISHQMSSVQTPQQNGVVER 167
BLAST of mRNA_H-paniculata_contig19954.5095.1 vs. uniprot
Match: A0A5D3DQT9_CUCME (Gag/pol polyprotein n=1 Tax=Cucumis melo var. makuwa TaxID=1194695 RepID=A0A5D3DQT9_CUCME) HSP 1 Score: 85.5 bits (210), Expect = 3.220e-17 Identity = 47/106 (44.34%), Postives = 57/106 (53.77%), Query Frame = 1
Query: 1 ERLYVDLGGPMRVASLGGSSYVIITVDDYSRFQAVKFIKKMSDATAALLSYIAEYITPKGLKIGAIHADNRGRFDG-DFRVKLDEHGISHELTPPDTPQYNGVFER 315
E L++DL GPM+ SLG YV++ VDDYSRF V+F+K SD +S KG KI I +D+ FD D GI HE P TPQ NGV ER
Sbjct: 343 ELLHLDLIGPMKTESLGRKKYVLVVVDDYSRFTRVRFLKGKSDTVKLCISLYLNLQREKGQKIIRIRSDHGKEFDNEDLNNFCQTEGIHHEFVAPITPQQNGVVER 448
BLAST of mRNA_H-paniculata_contig19954.5095.1 vs. uniprot
Match: A0A151SK87_CAJCA (Retrovirus-related Pol polyprotein from transposon TNT 1-94 n=2 Tax=Cajanus cajan TaxID=3821 RepID=A0A151SK87_CAJCA) HSP 1 Score: 85.5 bits (210), Expect = 3.320e-17 Identity = 44/106 (41.51%), Postives = 62/106 (58.49%), Query Frame = 1
Query: 1 ERLYVDLGGPMRVASLGGSSYVIITVDDYSRFQAVKFIKKMSDATAALLSYIAEYITPKGLKIGAIHADNRGRFDGD-FRVKLDEHGISHELTPPDTPQYNGVFER 315
E L++DL GP R SLGG++Y ++ +DDYSRF V FI +A A K LKI ++ +D+ G F + F+ +E+GI+H + P TPQ NGV ER
Sbjct: 712 ELLHMDLFGPSRTKSLGGNTYALVLIDDYSRFTWVAFISHKDNAFKAFRIISKRIQNEKDLKIKSLRSDHGGEFQNESFQTFCEENGINHNFSVPRTPQQNGVVER 817
BLAST of mRNA_H-paniculata_contig19954.5095.1 vs. uniprot
Match: A0A5D3BZJ1_CUCME (Peptidase aspartic, catalytic n=1 Tax=Cucumis melo var. makuwa TaxID=1194695 RepID=A0A5D3BZJ1_CUCME) HSP 1 Score: 80.9 bits (198), Expect = 7.970e-17 Identity = 45/105 (42.86%), Postives = 55/105 (52.38%), Query Frame = 1
Query: 1 ERLYVDLGGPMRVASLGGSSYVIITVDDYSRFQAVKFIKKMSDATAALLSYIAEYITPKGLKIGAIHADNRGRFDG-DFRVKLDEHGISHELTPPDTPQYNGVFE 312
E L++DL PM+ SLGG YV++ VDDYSRF V+F+K D +S K KI IH+D+ FD D GI HE P TPQ NGV E
Sbjct: 84 ELLHLDLMDPMQTESLGGKKYVLVVVDDYSRFTWVRFLKGKLDTVKLCISLCLNLQREKRQKIIRIHSDHGKEFDNEDLNNFCQTEGIHHEFAAPITPQQNGVVE 188
BLAST of mRNA_H-paniculata_contig19954.5095.1 vs. uniprot
Match: A0A5D3E4L4_CUCME (Gag-pol polyprotein n=1 Tax=Cucumis melo var. makuwa TaxID=1194695 RepID=A0A5D3E4L4_CUCME) HSP 1 Score: 84.3 bits (207), Expect = 8.200e-17 Identity = 46/102 (45.10%), Postives = 55/102 (53.92%), Query Frame = 1
Query: 13 VDLGGPMRVASLGGSSYVIITVDDYSRFQAVKFIKKMSDATAALLSYIAEYITPKGLKIGAIHADNRGRFDG-DFRVKLDEHGISHELTPPDTPQYNGVFER 315
+D+ GPM+ SLGG YV++ VDDYSRF V F+K SD +S KG KI I +D+ FD D GI HE T P TPQ NGV ER
Sbjct: 336 LDINGPMQTESLGGKKYVLVVVDDYSRFTWVPFLKGKSDTVKLCISLCLNLQGEKGQKIIRIRSDHGKEFDNEDLNNFCQPKGIHHEFTAPITPQQNGVVER 437
BLAST of mRNA_H-paniculata_contig19954.5095.1 vs. uniprot
Match: A0A5D3BA69_CUCME (Gag-pol polyprotein n=1 Tax=Cucumis melo var. makuwa TaxID=1194695 RepID=A0A5D3BA69_CUCME) HSP 1 Score: 84.0 bits (206), Expect = 1.100e-16 Identity = 45/106 (42.45%), Postives = 58/106 (54.72%), Query Frame = 1
Query: 1 ERLYVDLGGPMRVASLGGSSYVIITVDDYSRFQAVKFIKKMSDATAALLSYIAEYITPKGLKIGAIHADNRGRFDG-DFRVKLDEHGISHELTPPDTPQYNGVFER 315
E L+++L GPM+ SLGG YV++ VDDYS+F V+F+K+ D +S KG KI I +D+ FD D GI HE P TPQ NGV ER
Sbjct: 311 ELLHLNLMGPMQTESLGGKKYVLVVVDDYSKFTWVRFLKEKFDTVKLCISLCLNLQREKGQKIIRIRSDHGKEFDNEDLNNLCQTEGIHHEFAAPITPQQNGVVER 416
BLAST of mRNA_H-paniculata_contig19954.5095.1 vs. uniprot
Match: W8AQ86_CERCA (Retrovirus-related Pol polyprotein from transposon TNT 1-94 n=1 Tax=Ceratitis capitata TaxID=7213 RepID=W8AQ86_CERCA) HSP 1 Score: 84.0 bits (206), Expect = 1.150e-16 Identity = 44/106 (41.51%), Postives = 62/106 (58.49%), Query Frame = 1
Query: 1 ERLYVDLGGPMRVASLGGSSYVIITVDDYSRFQAVKFIKKMSDATAALLSYIAEYITPKGLKIGAIHADNRGRF-DGDFRVKLDEHGISHELTPPDTPQYNGVFER 315
E ++ DL GPM + S+GG+SY + +DDYSR+ AV FIK+ S+A + A G KI ++ +DN F + +F L E GI H+ T +PQ NGV ER
Sbjct: 479 ELVHTDLCGPMGIGSVGGASYFVTFIDDYSRYTAVYFIKRKSEALNMFKLFTASAEKQTGRKIKSVRSDNGREFVNSEFEKYLSERGIRHQTTVAYSPQQNGVAER 584
BLAST of mRNA_H-paniculata_contig19954.5095.1 vs. uniprot
Match: UPI0011DF2343 (uncharacterized protein LOC115720458 n=1 Tax=Cannabis sativa TaxID=3483 RepID=UPI0011DF2343) HSP 1 Score: 84.0 bits (206), Expect = 1.150e-16 Identity = 45/109 (41.28%), Postives = 64/109 (58.72%), Query Frame = 1
Query: 1 ERLYVDLGGPMRVASLGGSSYVIITVDDYSRFQAVKFIKKMSDATAALLSYIAEYITPKGLKIGAIH---ADNRGRFDGD-FRVKLDEHGISHELTPPDTPQYNGVFER 315
E L+VDL GPM+ AS+ G YV++ VDD+SRF V F+K+ SD A S + K IG ++ +D+ F+ + F D+ GI+HE + P TPQ NG+ ER
Sbjct: 958 ELLHVDLMGPMQTASIAGKRYVMVCVDDFSRFTWVNFLKEKSDTFGAFSSLCLKLQNEKDATIGKVYRVRSDHGKEFENEIFAQFCDKMGINHEFSAPKTPQQNGIVER 1066 The following BLAST results are available for this feature:
BLAST of mRNA_H-paniculata_contig19954.5095.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 vs UniRef90) Total hits: 25
Pagesback to topAlignments
The following features are aligned
Analyses
This mRNA is derived from or has results from the following analyses
Properties
Relationships
The following UTR feature(s) are a part of this mRNA:
The following CDS feature(s) are a part of this mRNA:
The following polypeptide feature(s) derives from this mRNA:
Sequences
The following sequences are available for this feature:
protein sequence of mRNA_H-paniculata_contig19954.5095.1 >prot_H-paniculata_contig19954.5095.1 ID=prot_H-paniculata_contig19954.5095.1|Name=mRNA_H-paniculata_contig19954.5095.1|organism=Halopteris paniculata Hal_grac_a_UBK monoicous|type=polypeptide|length=95bp MRVASLGGSSYVIITVDDYSRFQAVKFIKKMSDATAALLSYIAEYITPKGback to top mRNA from alignment at H-paniculata_contig19954:3659..3973+ Legend: UTRpolypeptideCDS Hold the cursor over a type above to highlight its positions in the sequence below.>mRNA_H-paniculata_contig19954.5095.1 ID=mRNA_H-paniculata_contig19954.5095.1|Name=mRNA_H-paniculata_contig19954.5095.1|organism=Halopteris paniculata Hal_grac_a_UBK monoicous|type=mRNA|length=315bp|location=Sequence derived from alignment at H-paniculata_contig19954:3659..3973+ (Halopteris paniculata Hal_grac_a_UBK monoicous)back to top Coding sequence (CDS) from alignment at H-paniculata_contig19954:3659..3973+ >mRNA_H-paniculata_contig19954.5095.1 ID=mRNA_H-paniculata_contig19954.5095.1|Name=mRNA_H-paniculata_contig19954.5095.1|organism=Halopteris paniculata Hal_grac_a_UBK monoicous|type=CDS|length=570bp|location=Sequence derived from alignment at H-paniculata_contig19954:3659..3973+ (Halopteris paniculata Hal_grac_a_UBK monoicous)back to top |