mRNA_H-paniculata_contig19945.5092.1 (mRNA) Halopteris paniculata Hal_grac_a_UBK monoicous

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_H-paniculata_contig19945.5092.1
Unique NamemRNA_H-paniculata_contig19945.5092.1
TypemRNA
OrganismHalopteris paniculata Hal_grac_a_UBK monoicous (Halopteris paniculata Hal_grac_a_UBK monoicous)
Homology
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BLAST of mRNA_H-paniculata_contig19945.5092.1 vs. uniprot
Match: D8LDJ5_ECTSI (Ubiquitinyl hydrolase 1 n=2 Tax=Ectocarpus TaxID=2879 RepID=D8LDJ5_ECTSI)

HSP 1 Score: 132 bits (332), Expect = 1.030e-30
Identity = 70/124 (56.45%), Postives = 87/124 (70.16%), Query Frame = 3 
Query:  543 GIYQPQPVPEEEPTGPEVVRVQLRLDGNKRIVRRFRRSDPISLLFDIAAHALAEADHKPIAAPFDIIDPNGRALLKAGRVVVALGRGVSETETTGEMTGGSAKD---TTIGSERLGGASLLVRR 905
            G+Y PQPVPE +P GP+VVRVQLR+ G +R+V  FRRSDP++ LFD+AA ALA+AD K + +PFD++ P GRALLKAG VV     G   T       GG   D    TIGSE+LGGAS++VRR
Sbjct:  288 GLYTPQPVPELQPNGPDVVRVQLRVGGGQRVVHSFRRSDPLTALFDVAAQALAKADGKALPSPFDVVAPGGRALLKAGVVVPGTDGGDVATAAKPAGAGGGESDGGGPTIGSEQLGGASVIVRR 411
The following BLAST results are available for this feature:
BLAST of mRNA_H-paniculata_contig19945.5092.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 vs UniRef90)
Total hits: 1
Match NameE-valueIdentityDescription
D8LDJ5_ECTSI1.030e-3056.45Ubiquitinyl hydrolase 1 n=2 Tax=Ectocarpus TaxID=2... [more]
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Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
H-paniculata_contig19945contigH-paniculata_contig19945:1156..3077 +
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 vs UniRef902022-09-19
OGS1.0 of Halopteris paniculata Hal_grac_a_UBK monoicous2021-02-24
Properties
Property NameValue
Taxonomic scopeEukaryota
Seed ortholog score132.5
Seed ortholog evalue1.9e-28
Seed eggNOG ortholog2880.D8LDJ5
Preferred nameATXN3
KEGG koko:K11863
KEGG Pathwayko04141,map04141
Hectar predicted targeting categoryother localisation
GOsGO:0000226,GO:0001012,GO:0001067,GO:0003674,GO:0003676,GO:0003677,GO:0003824,GO:0004843,GO:0005488,GO:0005515,GO:0005575,GO:0005622,GO:0005623,GO:0005634,GO:0005654,GO:0005730,GO:0005737,GO:0005739,GO:0005740,GO:0005759,GO:0005829,GO:0005886,GO:0006139,GO:0006259,GO:0006281,GO:0006289,GO:0006325,GO:0006464,GO:0006476,GO:0006508,GO:0006511,GO:0006515,GO:0006725,GO:0006807,GO:0006950,GO:0006974,GO:0006996,GO:0007010,GO:0007017,GO:0007154,GO:0007267,GO:0007268,GO:0007275,GO:0007399,GO:0007610,GO:0008104,GO:0008150,GO:0008152,GO:0008233,GO:0008234,GO:0009056,GO:0009057,GO:0009266,GO:0009408,GO:0009628,GO:0009893,GO:0009894,GO:0009896,GO:0009987,GO:0010033,GO:0010243,GO:0010498,GO:0010604,GO:0010810,GO:0016020,GO:0016043,GO:0016234,GO:0016569,GO:0016570,GO:0016575,GO:0016579,GO:0016787,GO:0019222,GO:0019538,GO:0019783,GO:0019899,GO:0019941,GO:0023052,GO:0030029,GO:0030036,GO:0030155,GO:0030162,GO:0030163,GO:0031090,GO:0031323,GO:0031325,GO:0031329,GO:0031331,GO:0031625,GO:0031966,GO:0031967,GO:0031974,GO:0031975,GO:0031981,GO:0032268,GO:0032270,GO:0032501,GO:0032502,GO:0033036,GO:0033554,GO:0034605,GO:0034641,GO:0034976,GO:0035520,GO:0035601,GO:0035640,GO:0035966,GO:0035967,GO:0036211,GO:0036459,GO:0036503,GO:0042176,GO:0042221,GO:0042405,GO:0042802,GO:0043161,GO:0043170,GO:0043226,GO:0043227,GO:0043228,GO:0043229,GO:0043231,GO:0043232,GO:0043233,GO:0043412,GO:0043632,GO:0044212,GO:0044237,GO:0044238,GO:0044248,GO:0044257,GO:0044260,GO:0044265,GO:0044267,GO:0044389,GO:0044422,GO:0044424,GO:0044428,GO:0044429,GO:0044444,GO:0044446,GO:0044464,GO:0045103,GO:0045104,GO:0045732,GO:0045862,GO:0046483,GO:0048518,GO:0048522,GO:0048583,GO:0048584,GO:0048731,GO:0048856,GO:0050789,GO:0050794,GO:0050896,GO:0051117,GO:0051171,GO:0051173,GO:0051179,GO:0051246,GO:0051247,GO:0051276,GO:0051603,GO:0051716,GO:0051788,GO:0060255,GO:0061136,GO:0061578,GO:0065007,GO:0070011,GO:0070013,GO:0070536,GO:0070646,GO:0070647,GO:0070887,GO:0070932,GO:0071108,GO:0071218,GO:0071310,GO:0071704,GO:0071840,GO:0071944,GO:0080090,GO:0080134,GO:0080135,GO:0090304,GO:0097159,GO:0098732,GO:0098916,GO:0099536,GO:0099537,GO:0101005,GO:0140096,GO:1901360,GO:1901363,GO:1901564,GO:1901565,GO:1901575,GO:1901698,GO:1901800,GO:1903050,GO:1903052,GO:1903362,GO:1903364,GO:1904292,GO:1904294,GO:1904327,GO:1904379,GO:1905897,GO:1905898,GO:1990380
EggNOG free text desc.protein localization to cytosolic proteasome complex
EggNOG OGsKOG2935@1,KOG2935@2759
Ec32 ortholog descriptionUbiquitin-related domain
Ec32 orthologEc-15_000320.1
COG Functional cat.O
Best tax levelEukaryota
Best eggNOG OGNA|NA|NA
BRITEko00000,ko00001,ko01000,ko01002,ko04121
Exons2
Model size1337
Cds size525
Stop1
Start1
Relationships

The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_H-paniculata_contig19945.5092.1prot_H-paniculata_contig19945.5092.1Halopteris paniculata Hal_grac_a_UBK monoicouspolypeptideH-paniculata_contig19945 1545..2654 +


The following UTR feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1622929503.008611-UTR-H-paniculata_contig19945:1155..15441622929503.008611-UTR-H-paniculata_contig19945:1155..1544Halopteris paniculata Hal_grac_a_UBK monoicousUTRH-paniculata_contig19945 1156..1544 +
1691480889.2067697-UTR-H-paniculata_contig19945:1155..15441691480889.2067697-UTR-H-paniculata_contig19945:1155..1544Halopteris paniculata Hal_grac_a_UBK monoicousUTRH-paniculata_contig19945 1156..1544 +
1622929503.0500216-UTR-H-paniculata_contig19945:2654..30771622929503.0500216-UTR-H-paniculata_contig19945:2654..3077Halopteris paniculata Hal_grac_a_UBK monoicousUTRH-paniculata_contig19945 2655..3077 +
1691480889.2342536-UTR-H-paniculata_contig19945:2654..30771691480889.2342536-UTR-H-paniculata_contig19945:2654..3077Halopteris paniculata Hal_grac_a_UBK monoicousUTRH-paniculata_contig19945 2655..3077 +


The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1622929503.0203824-CDS-H-paniculata_contig19945:1544..17631622929503.0203824-CDS-H-paniculata_contig19945:1544..1763Halopteris paniculata Hal_grac_a_UBK monoicousCDSH-paniculata_contig19945 1545..1763 +
1691480889.2196157-CDS-H-paniculata_contig19945:1544..17631691480889.2196157-CDS-H-paniculata_contig19945:1544..1763Halopteris paniculata Hal_grac_a_UBK monoicousCDSH-paniculata_contig19945 1545..1763 +
1622929503.0366359-CDS-H-paniculata_contig19945:2348..26541622929503.0366359-CDS-H-paniculata_contig19945:2348..2654Halopteris paniculata Hal_grac_a_UBK monoicousCDSH-paniculata_contig19945 2349..2654 +
1691480889.2269602-CDS-H-paniculata_contig19945:2348..26541691480889.2269602-CDS-H-paniculata_contig19945:2348..2654Halopteris paniculata Hal_grac_a_UBK monoicousCDSH-paniculata_contig19945 2349..2654 +


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_H-paniculata_contig19945.5092.1

>prot_H-paniculata_contig19945.5092.1 ID=prot_H-paniculata_contig19945.5092.1|Name=mRNA_H-paniculata_contig19945.5092.1|organism=Halopteris paniculata Hal_grac_a_UBK monoicous|type=polypeptide|length=175bp
MDDDGDGDDDDEVARAIALSLSQQDRHQNIQHEGAGKGKGLKAAGGGSGV
GGIYQPQPVPEEEPTGPEVVRVQLRLDGNKRIVRRFRRSDPISLLFDIAA
HALAEADHKPIAAPFDIIDPNGRALLKAGRVVVALGRGVSETETTGEMTG
GSAKDTTIGSERLGGASLLVRRTR*
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mRNA from alignment at H-paniculata_contig19945:1156..3077+

Legend: UTRpolypeptideCDS
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_H-paniculata_contig19945.5092.1 ID=mRNA_H-paniculata_contig19945.5092.1|Name=mRNA_H-paniculata_contig19945.5092.1|organism=Halopteris paniculata Hal_grac_a_UBK monoicous|type=mRNA|length=1922bp|location=Sequence derived from alignment at H-paniculata_contig19945:1156..3077+ (Halopteris paniculata Hal_grac_a_UBK monoicous)
TGTAATGGGTTTGATCTATTGATGTGTGTACTAGAAAGTTTTGCCACGTG
GAGTTTCTATCGTCTGATGGTGGTTCTGCGTGATCGGGATACGGTGCCGA
ATAATAATACAAACAGCAGTAATAGGTCAACGATAATGTTCATCTGTATG
TGGTACTTTGATCGAGATCAGGCGGCGGGACGAGTAAACCAACCTCAGCG
GCGACAAACGTCTGGCTAAACTCTGGCCCAGGCAACCGACTGGACGGCAG
ACCAACAAGAGCAACCACAACTACCAGTGCCGATTCGGCAGCGACGGAAG
ACGAGCAGTTGGCGAGGGCCCTGGCTGCCAGCTTGCAGGAGGGGGGCGAT
GGTGGAGGGGCAAGTTCCAGTTATCCTGACGGAGCCGTTATGGATGATGA
TGGCGACGGCGATGATGATGATGAGGTTGCTCGAGCAATCGCGCTTTCCT
TGTCGCAGCAAGATCGCCACCAAAACATACAACATGAAGGAGCAGGAAAA
GGGAAAGGGTTGAAAGCGGCTGGCGGCGGCAGCGGCGTGGGGGGGATATA
TCAGCCGCAGCCGGTGCCTGAGGAGGAGCCGACAGGTCCAGAAGTTGTTC
GAGTTCAGGTGTGTGTGTGGTAACTTTACCTTACGACCGACATTCTTTTA
TAGTACTTTGCGGTCAGAGGTTATAACCCCAGAACACCTTGTCGTGGTTT
GTCCACCGTATTACTTTCCATGATCATACCTTGCACTAGTCGTAATTCAT
GCTCCGCACATACAACTAAAACTACAATTTCTTGTGGACAATTTGGGCAT
TGATTTTACCGATTTTTACCGACGAGATCAGGTGCTGTGTTCTCTATTGC
CTGTTGTTTGTCTATGTAGGTATCTTTGTATGCATGTCACAGGTGACGCT
CACATGTGTGATCCTAATTTCCCTTTTTGTTTTTCGCGCTCAACATGATC
GGCAATACGCTCCCTTGTATCATACCGCGCGTGTCGCTTCCGATTGTCTT
GGTGTGCCATGTTGGTGTGCCATGTTCCATGGGCTCATCCGATGATCATC
ATCCCCCCCTTTTCCCTCCTTGGTCTATTTTTGCATGTGATAGGACATGT
GCTCATATGACTGTCACCTGTTTTCCCCTCTTTCGTTATTTCATGTACGC
CCGGCTTTTTTCTTTGTACGCGGTACAATCGCGTATTACACAGCTCCGAC
TGGACGGTAACAAGCGAATAGTTCGCCGGTTTCGTCGCTCGGACCCCATC
TCGCTGCTCTTCGACATTGCGGCGCACGCGCTGGCTGAGGCCGACCACAA
GCCAATAGCCGCGCCGTTTGACATTATTGATCCGAACGGAAGGGCGTTGT
TGAAAGCTGGTCGGGTTGTCGTCGCCTTAGGGAGGGGTGTGAGTGAGACA
GAGACTACTGGGGAAATGACCGGCGGGTCTGCGAAGGATACCACAATCGG
ATCAGAGCGGCTTGGTGGCGCCAGTTTGTTGGTCCGGAGGACTCGCTGAT
GTCCTGGTGGATTGCAAGCGCGAGTGGTGTAATCAAAGGAATGTTGTCCA
TTGTTGACTTTTTCTTGTGACTCTTACAGTCCTGCAGGCATTTATATCAA
TAGGATAACCAGCGGTAGGTCGGTATTGGTTGAGCTCATCCCCCTACTTC
CTTGAGTTTGTGGAAAAAGAGAGCTCATTCTAGCAACTTGAAACAAGACG
GAGCAAACCTCCATTTTATTTTATGGCCACTGTCGTGTTTTGACATTACA
TACTATAACTGATGGCGTGCTCCTTCCTCACCGCGCGCAATTCTCGTATG
CCGTTAATTTTTAAATTGCACAATTTTAAAACAAGTATAATAATGTAATA
TTAAAAAACACAACATGACTTGTGTAGCGTTCTTAATTTACTTGGATATT
TTGCTTGCCAGACCCGGCGGGA
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Coding sequence (CDS) from alignment at H-paniculata_contig19945:1156..3077+

>mRNA_H-paniculata_contig19945.5092.1 ID=mRNA_H-paniculata_contig19945.5092.1|Name=mRNA_H-paniculata_contig19945.5092.1|organism=Halopteris paniculata Hal_grac_a_UBK monoicous|type=CDS|length=1050bp|location=Sequence derived from alignment at H-paniculata_contig19945:1156..3077+ (Halopteris paniculata Hal_grac_a_UBK monoicous)
ATGGATGATGATGGCGACGGCGATGATGATGATGAGGTTGCTCGAGCAAT
CGCGCTTTCCTTGTCGCAGCAAGATCGCCACCAAAACATACAACATGAAG
GAGCAGGAAAAGGGAAAGGGTTGAAAGCGGCTGGCGGCGGCAGCGGCGTG
GGGGGGATATATCAGCCGCAGCCGGTGCCTGAGGAGGAGCCGACAGGTCC
AGAAGTTGTTCGAGTTCAGATGGATGATGATGGCGACGGCGATGATGATG
ATGAGGTTGCTCGAGCAATCGCGCTTTCCTTGTCGCAGCAAGATCGCCAC
CAAAACATACAACATGAAGGAGCAGGAAAAGGGAAAGGGTTGAAAGCGGC
TGGCGGCGGCAGCGGCGTGGGGGGGATATATCAGCCGCAGCCGGTGCCTG
AGGAGGAGCCGACAGGTCCAGAAGTTGTTCGAGTTCAGCTCCGACTGGAC
GGTAACAAGCGAATAGTTCGCCGGTTTCGTCGCTCGGACCCCATCTCGCT
GCTCTTCGACATTGCGGCGCACGCGCTGGCTGAGGCCGACCACAAGCCAA
TAGCCGCGCCGTTTGACATTATTGATCCGAACGGAAGGGCGTTGTTGAAA
GCTGGTCGGGTTGTCGTCGCCTTAGGGAGGGGTGTGAGTGAGACAGAGAC
TACTGGGGAAATGACCGGCGGGTCTGCGAAGGATACCACAATCGGATCAG
AGCGGCTTGGTGGCGCCAGTTTGTTGGTCCGGAGGACTCGCTGACTCCGA
CTGGACGGTAACAAGCGAATAGTTCGCCGGTTTCGTCGCTCGGACCCCAT
CTCGCTGCTCTTCGACATTGCGGCGCACGCGCTGGCTGAGGCCGACCACA
AGCCAATAGCCGCGCCGTTTGACATTATTGATCCGAACGGAAGGGCGTTG
TTGAAAGCTGGTCGGGTTGTCGTCGCCTTAGGGAGGGGTGTGAGTGAGAC
AGAGACTACTGGGGAAATGACCGGCGGGTCTGCGAAGGATACCACAATCG
GATCAGAGCGGCTTGGTGGCGCCAGTTTGTTGGTCCGGAGGACTCGCTGA
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