prot_H-paniculata_contig19945.5092.1 (polypeptide) Halopteris paniculata Hal_grac_a_UBK monoicous

You are viewing a polypeptide, more information available on the corresponding mRNA page

Overview
NamemRNA_H-paniculata_contig19945.5092.1
Unique Nameprot_H-paniculata_contig19945.5092.1
Typepolypeptide
OrganismHalopteris paniculata Hal_grac_a_UBK monoicous (Halopteris paniculata Hal_grac_a_UBK monoicous)
Sequence length175
Homology
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BLAST of mRNA_H-paniculata_contig19945.5092.1 vs. uniprot
Match: D8LDJ5_ECTSI (Ubiquitinyl hydrolase 1 n=2 Tax=Ectocarpus TaxID=2879 RepID=D8LDJ5_ECTSI)

HSP 1 Score: 132 bits (331), Expect = 1.530e-33
Identity = 70/124 (56.45%), Postives = 87/124 (70.16%), Query Frame = 0 
Query:   52 GIYQPQPVPEEEPTGPEVVRVQLRLDGNKRIVRRFRRSDPISLLFDIAAHALAEADHKPIAAPFDIIDPNGRALLKAGRVVVALGRGVSETETTGEMTGGSAKD---TTIGSERLGGASLLVRR 172
            G+Y PQPVPE +P GP+VVRVQLR+ G +R+V  FRRSDP++ LFD+AA ALA+AD K + +PFD++ P GRALLKAG VV     G   T       GG   D    TIGSE+LGGAS++VRR
Sbjct:  288 GLYTPQPVPELQPNGPDVVRVQLRVGGGQRVVHSFRRSDPLTALFDVAAQALAKADGKALPSPFDVVAPGGRALLKAGVVVPGTDGGDVATAAKPAGAGGGESDGGGPTIGSEQLGGASVIVRR 411
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BLAST of mRNA_H-paniculata_contig19945.5092.1 vs. uniprot
Match: A0A1W0A165_9STRA (UBX domain-containing protein n=1 Tax=Thraustotheca clavata TaxID=74557 RepID=A0A1W0A165_9STRA)

HSP 1 Score: 53.9 bits (128), Expect = 2.530e-5
Identity = 23/53 (43.40%), Postives = 34/53 (64.15%), Query Frame = 0 
Query:   57 QPVPEEEPTGPEVVRVQLRLDGNKRIVRRFRRSDPISLLFDIAAHALAEADHK 109
            +P+PEE   GP V R+Q+R     R++RRF ++DP+SLLF    H + EA  +
Sbjct:  337 EPLPEEPSDGPMVTRIQIRTTSGTRLMRRFHKADPVSLLFRFVQHEIPEAQSR 389
The following BLAST results are available for this feature:
BLAST of mRNA_H-paniculata_contig19945.5092.1 vs. uniprot
Analysis Date: 2022-09-16 (Diamond blastp: OGS1.0 vs UniRef90)
Total hits: 2
Match NameE-valueIdentityDescription
D8LDJ5_ECTSI1.530e-3356.45Ubiquitinyl hydrolase 1 n=2 Tax=Ectocarpus TaxID=2... [more]
A0A1W0A165_9STRA2.530e-543.40UBX domain-containing protein n=1 Tax=Thraustothec... [more]
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InterPro
Analysis Name: InterProScan on OGS1.0
Date Performed: 2022-09-29
IPR TermIPR DescriptionSourceSource TermSource DescriptionAlignment
IPR001012UBX domainPROSITEPS50033UBXcoord: 65..98
score: 10.03
IPR029071Ubiquitin-like domain superfamilySUPERFAMILY54236Ubiquitin-likecoord: 60..104

Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
H-paniculata_contig19945contigH-paniculata_contig19945:1545..2654 +
Analyses
This polypeptide is derived from or has results from the following analyses
Analysis NameDate Performed
InterProScan on OGS1.02022-09-29
Diamond blastp: OGS1.0 vs UniRef902022-09-16
OGS1.0 of Halopteris paniculata Hal_grac_a_UBK monoicous2021-02-24
Relationships

This polypeptide derives from the following mRNA feature(s):

Feature NameUnique NameSpeciesTypePosition
mRNA_H-paniculata_contig19945.5092.1mRNA_H-paniculata_contig19945.5092.1Halopteris paniculata Hal_grac_a_UBK monoicousmRNAH-paniculata_contig19945 1156..3077 +


Sequences
The following sequences are available for this feature:

polypeptide sequence

>prot_H-paniculata_contig19945.5092.1 ID=prot_H-paniculata_contig19945.5092.1|Name=mRNA_H-paniculata_contig19945.5092.1|organism=Halopteris paniculata Hal_grac_a_UBK monoicous|type=polypeptide|length=175bp
MDDDGDGDDDDEVARAIALSLSQQDRHQNIQHEGAGKGKGLKAAGGGSGV
GGIYQPQPVPEEEPTGPEVVRVQLRLDGNKRIVRRFRRSDPISLLFDIAA
HALAEADHKPIAAPFDIIDPNGRALLKAGRVVVALGRGVSETETTGEMTG
GSAKDTTIGSERLGGASLLVRRTR*
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Annotated Terms
The following terms have been associated with this polypeptide:
Vocabulary: INTERPRO
TermDefinition
IPR001012UBX_dom
IPR029071Ubiquitin-like_domsf