mRNA_H-paniculata_contig19899.5083.1 (mRNA) Halopteris paniculata Hal_grac_a_UBK monoicous

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_H-paniculata_contig19899.5083.1
Unique NamemRNA_H-paniculata_contig19899.5083.1
TypemRNA
OrganismHalopteris paniculata Hal_grac_a_UBK monoicous (Halopteris paniculata Hal_grac_a_UBK monoicous)
Homology
BLAST of mRNA_H-paniculata_contig19899.5083.1 vs. uniprot
Match: D7FXA7_ECTSI (FPL domain-containing protein n=1 Tax=Ectocarpus siliculosus TaxID=2880 RepID=D7FXA7_ECTSI)

HSP 1 Score: 103 bits (256), Expect = 2.340e-23
Identity = 81/197 (41.12%), Postives = 85/197 (43.15%), Query Frame = 1
Query:    7 NVGKNSSLFYLLSNNHVNDMIMFDFRLEDEEVLSHFASFLKTLSLRLNPKTVQDMGFVERR--------------------------------------------------GGKQXXXXXXXXXXXXEGGA----------------------------------------SFPLYTRALEYICHGDFHVRIAALTV 327
            NV  ++SLFYLLSNNHVNDMIMFDFRLEDEEVLSHFASFLKTLSLRLN  TVQ      RR                                                  GG+         XXX   GA                                        SFPLYTRALEYICHGDFH+RIAALTV
Sbjct:    2 NVKSDTSLFYLLSNNHVNDMIMFDFRLEDEEVLSHFASFLKTLSLRLNQDTVQFFLRGPRRKSRAQPQPXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXGGRDLENGAFSGXXXARDGAPQKXXXXXXXGXXXXXXXXXXXXXXXXXXXXXXXXXXXGSSFPLYTRALEYICHGDFHIRIAALTV 198          
BLAST of mRNA_H-paniculata_contig19899.5083.1 vs. uniprot
Match: A0A6H5K768_9PHAE (FPL domain-containing protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5K768_9PHAE)

HSP 1 Score: 100 bits (249), Expect = 2.100e-22
Identity = 84/197 (42.64%), Postives = 88/197 (44.67%), Query Frame = 1
Query:    7 NVGKNSSLFYLLSNNHVNDMIMFDFRLEDEEVLSHFASFLKTLSLRLNPKTVQDMGFVERRGGKQXXXXXXXXXXXXEG------------------------------------------------------------------------------------------GASFPLYTRALEYICHGDFHVRIAALTV 327
            NV  ++SLFYLLSNNHVNDMIMFDFRLEDEEVLSHFASFLKTLSLRLN  TVQ      RR  +     XXXXXXXX                                                                                            G+SFPLYTRALEYICHGDFHVRIAALTV
Sbjct:  368 NVKSDTSLFYLLSNNHVNDMIMFDFRLEDEEVLSHFASFLKTLSLRLNQHTVQFFLRGPRRKSRAQPQPXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXGSSFPLYTRALEYICHGDFHVRIAALTV 564          
BLAST of mRNA_H-paniculata_contig19899.5083.1 vs. uniprot
Match: C1E2B3_MICCC (FPL domain-containing protein (Fragment) n=1 Tax=Micromonas commoda (strain RCC299 / NOUM17 / CCMP2709) TaxID=296587 RepID=C1E2B3_MICCC)

HSP 1 Score: 83.2 bits (204), Expect = 9.640e-18
Identity = 50/111 (45.05%), Postives = 69/111 (62.16%), Query Frame = 1
Query:    4 RNVGKNSSLFYLLSNNHVNDMIMFDFRLEDEEVLSHFASFLKTLSLRLNPKTVQ---DMGFVERRGGKQXXXXXXXXXXXXEGGASFPLYTRALEYICHGDFHVRIAALTV 327
            +N+   +SLFYL SNNHVN++I  DF  +DEEV++++ S LKT+SL+LNP TVQ   D G   + G K+               ASFPL+TRA+ ++ H +  VR AA TV
Sbjct:   70 QNIQLETSLFYLFSNNHVNELIECDFDFDDEEVMAYYISLLKTISLKLNPATVQFFFDYGDGVQGGNKKCSEAPDAKL------ASFPLFTRAVGFVEHPESMVRAAARTV 174          
BLAST of mRNA_H-paniculata_contig19899.5083.1 vs. uniprot
Match: A0A7S0PJH9_MICPS (Hypothetical protein (Fragment) n=1 Tax=Micromonas pusilla TaxID=38833 RepID=A0A7S0PJH9_MICPS)

HSP 1 Score: 82.0 bits (201), Expect = 6.010e-16
Identity = 50/111 (45.05%), Postives = 68/111 (61.26%), Query Frame = 1
Query:    4 RNVGKNSSLFYLLSNNHVNDMIMFDFRLEDEEVLSHFASFLKTLSLRLNPKTVQ---DMGFVERRGGKQXXXXXXXXXXXXEGGASFPLYTRALEYICHGDFHVRIAALTV 327
            +N+   +SLFYL SNNHVN++I  DF  +DEEV++++ S LKT+SL+LNP TVQ   D G     G K+               ASFPL+TRA+ ++ H +  VR AA TV
Sbjct:   31 QNIQLETSLFYLFSNNHVNELIECDFDFDDEEVMAYYISLLKTISLKLNPATVQFFFDYGDGVLGGNKKCSEAPDAKL------ASFPLFTRAVGFVEHPESMVRAAARTV 135          
BLAST of mRNA_H-paniculata_contig19899.5083.1 vs. uniprot
Match: UPI000BA7EEC3 (protein CLEC16A-like isoform X1 n=4 Tax=Limulus polyphemus TaxID=6850 RepID=UPI000BA7EEC3)

HSP 1 Score: 80.1 bits (196), Expect = 2.980e-15
Identity = 46/109 (42.20%), Postives = 61/109 (55.96%), Query Frame = 1
Query:    1 FRNVGKNSSLFYLLSNNHVNDMIMFDFRLEDEEVLSHFASFLKTLSLRLNPKTVQDMGFVERRGGKQXXXXXXXXXXXXEGGASFPLYTRALEYICHGDFHVRIAALTV 327
            F N+   +SL+YLLSNNHVN +I+  F   DEEV++++ SFLKTLSL+LNP TV                         E    FPLYT A+++  HG+  VRIA  T+
Sbjct:  103 FENIRNETSLYYLLSNNHVNSIIVHKFDFSDEEVMAYYISFLKTLSLKLNPHTVN--------------------FFYNEHTNDFPLYTEAIKFFNHGESMVRIAVRTL 191          
BLAST of mRNA_H-paniculata_contig19899.5083.1 vs. uniprot
Match: A0A6P8I7U2_ACTTE (protein CLEC16A-like n=1 Tax=Actinia tenebrosa TaxID=6105 RepID=A0A6P8I7U2_ACTTE)

HSP 1 Score: 79.3 bits (194), Expect = 5.230e-15
Identity = 47/109 (43.12%), Postives = 63/109 (57.80%), Query Frame = 1
Query:    1 FRNVGKNSSLFYLLSNNHVNDMIMFDFRLEDEEVLSHFASFLKTLSLRLNPKTVQDMGFVERRGGKQXXXXXXXXXXXXEGGASFPLYTRALEYICHGDFHVRIAALTV 327
            F N+   +SL+YLLSNNHVN +I+  F   DEEVL+++ SFLKTLSL+LN +T+    F ER+                     FPLYT AL++  H +  VRIA  T+
Sbjct:  104 FENIRNQTSLYYLLSNNHVNSIIIHKFDFSDEEVLAYYISFLKTLSLKLNTQTIHFF-FNERKN-------------------DFPLYTEALKFFNHSESMVRIAVRTL 192          
BLAST of mRNA_H-paniculata_contig19899.5083.1 vs. uniprot
Match: UPI00109BBD19 (protein CLEC16A n=1 Tax=Exaiptasia diaphana TaxID=2652724 RepID=UPI00109BBD19)

HSP 1 Score: 79.3 bits (194), Expect = 5.530e-15
Identity = 47/109 (43.12%), Postives = 63/109 (57.80%), Query Frame = 1
Query:    1 FRNVGKNSSLFYLLSNNHVNDMIMFDFRLEDEEVLSHFASFLKTLSLRLNPKTVQDMGFVERRGGKQXXXXXXXXXXXXEGGASFPLYTRALEYICHGDFHVRIAALTV 327
            F N+   +SL+YLLSNNHVN +I+  F   DEEVL+++ SFLKTLSL+LN +T+    F ER+                     FPLYT AL++  H +  VRIA  T+
Sbjct:  104 FENIRNQTSLYYLLSNNHVNSIIIHKFDFSDEEVLAYYISFLKTLSLKLNTQTIHFF-FNERKN-------------------DFPLYTEALKFFNHSESMVRIAVRTL 192          
BLAST of mRNA_H-paniculata_contig19899.5083.1 vs. uniprot
Match: A0A6G1S4J3_9ACAR (Protein CLEC16A n=1 Tax=Aceria tosichella TaxID=561515 RepID=A0A6G1S4J3_9ACAR)

HSP 1 Score: 79.0 bits (193), Expect = 7.200e-15
Identity = 45/105 (42.86%), Postives = 58/105 (55.24%), Query Frame = 1
Query:    1 FRNVGKNSSLFYLLSNNHVNDMIMFDFRLEDEEVLSHFASFLKTLSLRLNPKTVQDMGFVERRGGKQXXXXXXXXXXXXEGGASFPLYTRALEYICHGDFHVRIA 315
            F N+   +SL+YLLSNNHVN +IM  F L DEEV++++ SFLKTLS +LNP T+                           G  FPLYT A++Y  H +  VRIA
Sbjct:  131 FENIRHETSLYYLLSNNHVNSIIMHKFDLSDEEVMAYYISFLKTLSFKLNPHTIH----------------------FFFNGTDFPLYTEAIKYFNHPEKMVRIA 213          
BLAST of mRNA_H-paniculata_contig19899.5083.1 vs. uniprot
Match: A7RKV2_NEMVE (Predicted protein (Fragment) n=1 Tax=Nematostella vectensis TaxID=45351 RepID=A7RKV2_NEMVE)

HSP 1 Score: 78.6 bits (192), Expect = 1.010e-14
Identity = 46/109 (42.20%), Postives = 63/109 (57.80%), Query Frame = 1
Query:    1 FRNVGKNSSLFYLLSNNHVNDMIMFDFRLEDEEVLSHFASFLKTLSLRLNPKTVQDMGFVERRGGKQXXXXXXXXXXXXEGGASFPLYTRALEYICHGDFHVRIAALTV 327
            F N+   +SL+YLLSNNHVN +I+  F   DEEVL+++ SFLKTLSL+LN +T+    F ER+                     FPLYT A+++  H +  VRIA  T+
Sbjct:   79 FENIRNETSLYYLLSNNHVNSIIIHKFDFSDEEVLAYYISFLKTLSLKLNTQTIHFF-FNERKN-------------------DFPLYTEAIKFFNHSESMVRIAVRTL 167          
BLAST of mRNA_H-paniculata_contig19899.5083.1 vs. uniprot
Match: UPI0013906825 (protein CLEC16A n=1 Tax=Nematostella vectensis TaxID=45351 RepID=UPI0013906825)

HSP 1 Score: 78.6 bits (192), Expect = 1.040e-14
Identity = 46/109 (42.20%), Postives = 63/109 (57.80%), Query Frame = 1
Query:    1 FRNVGKNSSLFYLLSNNHVNDMIMFDFRLEDEEVLSHFASFLKTLSLRLNPKTVQDMGFVERRGGKQXXXXXXXXXXXXEGGASFPLYTRALEYICHGDFHVRIAALTV 327
            F N+   +SL+YLLSNNHVN +I+  F   DEEVL+++ SFLKTLSL+LN +T+    F ER+                     FPLYT A+++  H +  VRIA  T+
Sbjct:  104 FENIRNETSLYYLLSNNHVNSIIIHKFDFSDEEVLAYYISFLKTLSLKLNTQTIHFF-FNERKN-------------------DFPLYTEAIKFFNHSESMVRIAVRTL 192          
The following BLAST results are available for this feature:
BLAST of mRNA_H-paniculata_contig19899.5083.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 vs UniRef90)
Total hits: 25
Match NameE-valueIdentityDescription
D7FXA7_ECTSI2.340e-2341.12FPL domain-containing protein n=1 Tax=Ectocarpus s... [more]
A0A6H5K768_9PHAE2.100e-2242.64FPL domain-containing protein n=1 Tax=Ectocarpus s... [more]
C1E2B3_MICCC9.640e-1845.05FPL domain-containing protein (Fragment) n=1 Tax=M... [more]
A0A7S0PJH9_MICPS6.010e-1645.05Hypothetical protein (Fragment) n=1 Tax=Micromonas... [more]
UPI000BA7EEC32.980e-1542.20protein CLEC16A-like isoform X1 n=4 Tax=Limulus po... [more]
A0A6P8I7U2_ACTTE5.230e-1543.12protein CLEC16A-like n=1 Tax=Actinia tenebrosa Tax... [more]
UPI00109BBD195.530e-1543.12protein CLEC16A n=1 Tax=Exaiptasia diaphana TaxID=... [more]
A0A6G1S4J3_9ACAR7.200e-1542.86Protein CLEC16A n=1 Tax=Aceria tosichella TaxID=56... [more]
A7RKV2_NEMVE1.010e-1442.20Predicted protein (Fragment) n=1 Tax=Nematostella ... [more]
UPI00139068251.040e-1442.20protein CLEC16A n=1 Tax=Nematostella vectensis Tax... [more]

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Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
H-paniculata_contig19899contigH-paniculata_contig19899:2804..3787 +
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 vs UniRef902022-09-19
OGS1.0 of Halopteris paniculata Hal_grac_a_UBK monoicous2021-02-24
Properties
Property NameValue
Taxonomic scopeEukaryota
Seed ortholog score105.9
Seed ortholog evalue1.2e-20
Seed eggNOG ortholog2880.D7FXA7
KEGG koko:K19513
Hectar predicted targeting categoryother localisation
EggNOG free text desc.negative regulation of macroautophagy by TORC1 signaling
EggNOG OGsKOG2219@1,KOG2219@2759
COG Functional cat.S
Best tax levelEukaryota
Best eggNOG OGNA|NA|NA
BRITEko00000,ko03029,ko04131
Exons2
Model size327
Cds size327
Stop0
Start0
Relationships

The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1622929501.6822758-CDS-H-paniculata_contig19899:2803..29681622929501.6822758-CDS-H-paniculata_contig19899:2803..2968Halopteris paniculata Hal_grac_a_UBK monoicousCDSH-paniculata_contig19899 2804..2968 +
1691480888.6179302-CDS-H-paniculata_contig19899:2803..29681691480888.6179302-CDS-H-paniculata_contig19899:2803..2968Halopteris paniculata Hal_grac_a_UBK monoicousCDSH-paniculata_contig19899 2804..2968 +
1622929501.6984723-CDS-H-paniculata_contig19899:3625..37871622929501.6984723-CDS-H-paniculata_contig19899:3625..3787Halopteris paniculata Hal_grac_a_UBK monoicousCDSH-paniculata_contig19899 3626..3787 +
1691480888.629174-CDS-H-paniculata_contig19899:3625..37871691480888.629174-CDS-H-paniculata_contig19899:3625..3787Halopteris paniculata Hal_grac_a_UBK monoicousCDSH-paniculata_contig19899 3626..3787 +


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_H-paniculata_contig19899.5083.1prot_H-paniculata_contig19899.5083.1Halopteris paniculata Hal_grac_a_UBK monoicouspolypeptideH-paniculata_contig19899 2804..3787 +


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_H-paniculata_contig19899.5083.1

>prot_H-paniculata_contig19899.5083.1 ID=prot_H-paniculata_contig19899.5083.1|Name=mRNA_H-paniculata_contig19899.5083.1|organism=Halopteris paniculata Hal_grac_a_UBK monoicous|type=polypeptide|length=109bp
FRNVGKNSSLFYLLSNNHVNDMIMFDFRLEDEEVLSHFASFLKTLSLRLN
PKTVQDMGFVERRGGKQEEGGSVGGEEEDEGGASFPLYTRALEYICHGDF
HVRIAALTV
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mRNA from alignment at H-paniculata_contig19899:2804..3787+

Legend: CDSpolypeptide
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_H-paniculata_contig19899.5083.1 ID=mRNA_H-paniculata_contig19899.5083.1|Name=mRNA_H-paniculata_contig19899.5083.1|organism=Halopteris paniculata Hal_grac_a_UBK monoicous|type=mRNA|length=984bp|location=Sequence derived from alignment at H-paniculata_contig19899:2804..3787+ (Halopteris paniculata Hal_grac_a_UBK monoicous)
TTTCGAAACGTTGGCAAGAACAGTTCGCTGTTCTATCTTTTGTCGAACAA TCATGTAAATGATATGATCATGTTCGACTTTCGCTTGGAGGACGAGGAGG TGTTGAGCCACTTCGCCAGCTTTCTCAAGACTCTGTCCCTACGGCTCAAT CCTAAAACTGTTCAGGTGAGCTGATGGCTGTTTGTTTGCTCTATTTTATC TCTTACGGTAGAGTGAAAGGAGCCTTGTTCTTATCTTGCAATTTTCTTTT TGCCCGTGGTGTTCATGTGTCGACTCCGTAGGACCTGGTGTTGGTCATCA AATCCTACCTAATATTATCTGTTTTCGTTGTTATTGTTAATATGTCACCC CGTTACTCTGTTACCCCGTTACTCTGTTACCCCGTTACTCTGTTACCCTG TTAATCTGTTAATCTGTTACTCTGTTACTCTTTTACTCTATTAATCTATC ACCCTGTCACTGTTACGCTGTTTCTATTGTCATTACGACGTGAGAGTAGG TGTTCGCGTGACGAATTAATTTCAACATAAAAGAACCATCGTAACACTAG CCATTTGATACCCCTAACCCTAACCCTGACATCACAAAAAAAGTTCCGCC ACCCTTCCATCCCCCTCTTCGACCCTCCGCCCTCCACCCTCCCAACTCAA GTTTTTCCTTCAAGCACCACGACAGCCGCAACGCCTTTCGTCCCCTAGAA ACGCGCCAATACCACCGGGGGACATAAATGGCGCGGCGGGAGCAGGGGAC GATTGGAAGGAGGAAACAGCAGTCGACGATGACGATTCAGCAACTGTGGG TACTGCGGTGGGCGCGACGGAGGATATGGGTTTTGTAGAGAGAAGGGGAG GAAAGCAGGAGGAGGGCGGGAGTGTTGGCGGCGAGGAGGAAGACGAAGGG GGTGCCTCGTTCCCGCTGTATACCCGTGCGCTGGAGTACATCTGTCATGG AGATTTTCACGTGCGAATTGCGGCGCTTACGGTG
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Coding sequence (CDS) from alignment at H-paniculata_contig19899:2804..3787+

>mRNA_H-paniculata_contig19899.5083.1 ID=mRNA_H-paniculata_contig19899.5083.1|Name=mRNA_H-paniculata_contig19899.5083.1|organism=Halopteris paniculata Hal_grac_a_UBK monoicous|type=CDS|length=654bp|location=Sequence derived from alignment at H-paniculata_contig19899:2804..3787+ (Halopteris paniculata Hal_grac_a_UBK monoicous)
TTTCGAAACGTTGGCAAGAACAGTTCGCTGTTCTATCTTTTGTCGAACAA
TCATGTAAATGATATGATCATGTTCGACTTTCGCTTGGAGGACGAGGAGG
TGTTGAGCCACTTCGCCAGCTTTCTCAAGACTCTGTCCCTACGGCTCAAT
CCTAAAACTGTTCAGTTTCGAAACGTTGGCAAGAACAGTTCGCTGTTCTA
TCTTTTGTCGAACAATCATGTAAATGATATGATCATGTTCGACTTTCGCT
TGGAGGACGAGGAGGTGTTGAGCCACTTCGCCAGCTTTCTCAAGACTCTG
TCCCTACGGCTCAATCCTAAAACTGTTCAGGATATGGGTTTTGTAGAGAG
AAGGGGAGGAAAGCAGGAGGAGGGCGGGAGTGTTGGCGGCGAGGAGGAAG
ACGAAGGGGGTGCCTCGTTCCCGCTGTATACCCGTGCGCTGGAGTACATC
TGTCATGGAGATTTTCACGTGCGAATTGCGGCGCTTACGGTGGATATGGG
TTTTGTAGAGAGAAGGGGAGGAAAGCAGGAGGAGGGCGGGAGTGTTGGCG
GCGAGGAGGAAGACGAAGGGGGTGCCTCGTTCCCGCTGTATACCCGTGCG
CTGGAGTACATCTGTCATGGAGATTTTCACGTGCGAATTGCGGCGCTTAC
GGTG
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