mRNA_H-paniculata_contig19897.5081.1 (mRNA) Halopteris paniculata Hal_grac_a_UBK monoicous

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_H-paniculata_contig19897.5081.1
Unique NamemRNA_H-paniculata_contig19897.5081.1
TypemRNA
OrganismHalopteris paniculata Hal_grac_a_UBK monoicous (Halopteris paniculata Hal_grac_a_UBK monoicous)
Homology
BLAST of mRNA_H-paniculata_contig19897.5081.1 vs. uniprot
Match: D7FRC0_ECTSI (Radical S-adenosyl methionine domain-containing protein 1, mitochondrial n=1 Tax=Ectocarpus siliculosus TaxID=2880 RepID=D7FRC0_ECTSI)

HSP 1 Score: 90.1 bits (222), Expect = 2.590e-19
Identity = 44/70 (62.86%), Postives = 53/70 (75.71%), Query Frame = 1
Query:    1 QERLLQFLSLGVNRVSMGVQSFDADLLRSCGRAHSLQDVYDAVQVMRKAGVENFSIDLMR*IPTLNCTPW 210
            + RL  FL+LG+ RVSMGVQSFDA LL +CGRAHSL DVY AV+++RKA V+NFSIDLM  +P      W
Sbjct:  181 EARLEAFLALGITRVSMGVQSFDAGLLEACGRAHSLADVYQAVELLRKAKVDNFSIDLMSGLPKQTVEQW 250          
BLAST of mRNA_H-paniculata_contig19897.5081.1 vs. uniprot
Match: A0A1S3TYQ3_VIGRR (Radical S-adenosyl methionine domain-containing protein 1, mitochondrial n=6 Tax=Phaseoleae TaxID=163735 RepID=A0A1S3TYQ3_VIGRR)

HSP 1 Score: 88.6 bits (218), Expect = 8.140e-19
Identity = 38/77 (49.35%), Postives = 59/77 (76.62%), Query Frame = 1
Query:    4 ERLLQFLSLGVNRVSMGVQSFDADLLRSCGRAHSLQDVYDAVQVMRKAGVENFSIDLMR*IPTLNCTPWTGNYLLTI 234
            E++ + ++LGVNRVS+GVQ+F  +LLR+CGRAH +Q++++A+ V++  GVEN+SIDL+  +P  NC  W  +  LTI
Sbjct:  169 EKMREMIALGVNRVSLGVQAFQEELLRACGRAHGVQEIHEAISVVKSCGVENWSIDLIASLPHQNCEMWEESLRLTI 245          
BLAST of mRNA_H-paniculata_contig19897.5081.1 vs. uniprot
Match: A0A6H5K982_9PHAE (Radical SAM core domain-containing protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5K982_9PHAE)

HSP 1 Score: 88.6 bits (218), Expect = 8.750e-19
Identity = 43/70 (61.43%), Postives = 52/70 (74.29%), Query Frame = 1
Query:    1 QERLLQFLSLGVNRVSMGVQSFDADLLRSCGRAHSLQDVYDAVQVMRKAGVENFSIDLMR*IPTLNCTPW 210
            + RL  FL+LG+ RVSMGVQSFD  LL +CGRAHSL DVY AV+++RKA V+NFSIDLM  +P      W
Sbjct:  122 EARLEAFLALGITRVSMGVQSFDGGLLEACGRAHSLADVYQAVELLRKAKVDNFSIDLMSGLPKQTVEQW 191          
BLAST of mRNA_H-paniculata_contig19897.5081.1 vs. uniprot
Match: A0A7S0SV04_9STRA (Hypothetical protein (Fragment) n=1 Tax=Chromulina nebulosa TaxID=96789 RepID=A0A7S0SV04_9STRA)

HSP 1 Score: 82.8 bits (203), Expect = 4.130e-18
Identity = 35/69 (50.72%), Postives = 52/69 (75.36%), Query Frame = 1
Query:    4 ERLLQFLSLGVNRVSMGVQSFDADLLRSCGRAHSLQDVYDAVQVMRKAGVENFSIDLMR*IPTLNCTPW 210
            +RL Q   +G+NR+SMGVQSFD ++L+SCGRAHSL D+Y+A+  + K+  +NFSIDL+  +P ++   W
Sbjct:    9 KRLQQLKQIGINRISMGVQSFDENMLKSCGRAHSLSDIYNALDALNKSDFDNFSIDLISSLPGMSMNEW 77          
BLAST of mRNA_H-paniculata_contig19897.5081.1 vs. uniprot
Match: UPI00101720F0 (uncharacterized protein LOC114162341 isoform X2 n=1 Tax=Vigna unguiculata TaxID=3917 RepID=UPI00101720F0)

HSP 1 Score: 83.6 bits (205), Expect = 2.020e-17
Identity = 38/77 (49.35%), Postives = 58/77 (75.32%), Query Frame = 1
Query:    4 ERLLQFLSLGVNRVSMGVQSFDADLLRSCGRAHSLQDVYDAVQVMRKAGVENFSIDLMR*IPTLNCTPWTGNYLLTI 234
            E++ + ++LGVNRVS+GVQ+F  +LLRSCGRAH +Q+V++A+ V++  GVEN+SIDL+  +P  +   W  +  LTI
Sbjct:  170 EKMREMVALGVNRVSLGVQAFQEELLRSCGRAHGVQEVHEAISVVKSCGVENWSIDLIASLPHQSWEMWEESLRLTI 246          
BLAST of mRNA_H-paniculata_contig19897.5081.1 vs. uniprot
Match: A0A6I9SRW2_SESIN (Radical S-adenosyl methionine domain-containing protein 1, mitochondrial n=1 Tax=Sesamum indicum TaxID=4182 RepID=A0A6I9SRW2_SESIN)

HSP 1 Score: 81.6 bits (200), Expect = 2.330e-16
Identity = 36/76 (47.37%), Postives = 58/76 (76.32%), Query Frame = 1
Query:    7 RLLQFLSLGVNRVSMGVQSFDADLLRSCGRAHSLQDVYDAVQVMRKAGVENFSIDLMR*IPTLNCTPWTGNYLLTI 234
            +L + ++LGVNRVS+GVQ+F  +LLR+CGRAH +++VY+AV++++  GVEN+S+DL+  +P    + W  +  LTI
Sbjct:  173 KLKELMNLGVNRVSLGVQAFQEELLRACGRAHGVREVYEAVKIVKSCGVENWSMDLISSLPHQTLSIWEQSLQLTI 248          
BLAST of mRNA_H-paniculata_contig19897.5081.1 vs. uniprot
Match: UPI001CFBF85F (heme chaperone HemW n=1 Tax=Mangifera indica TaxID=29780 RepID=UPI001CFBF85F)

HSP 1 Score: 81.3 bits (199), Expect = 3.010e-16
Identity = 36/76 (47.37%), Postives = 56/76 (73.68%), Query Frame = 1
Query:    7 RLLQFLSLGVNRVSMGVQSFDADLLRSCGRAHSLQDVYDAVQVMRKAGVENFSIDLMR*IPTLNCTPWTGNYLLTI 234
            +L + + LGVNRVS+GVQ+F  DLL+SCGRAH +++VY+A+++++  GVEN+S+DL+  +P      W  +  LTI
Sbjct:  168 KLKELMELGVNRVSLGVQAFQDDLLKSCGRAHGVKEVYEAIEIVKSCGVENWSMDLISSLPHQTPEMWEESLRLTI 243          
BLAST of mRNA_H-paniculata_contig19897.5081.1 vs. uniprot
Match: A0A2P6P578_ROSCH (Radical S-adenosyl methionine domain-containing protein 1, mitochondrial n=1 Tax=Rosa chinensis TaxID=74649 RepID=A0A2P6P578_ROSCH)

HSP 1 Score: 81.3 bits (199), Expect = 3.130e-16
Identity = 37/77 (48.05%), Postives = 55/77 (71.43%), Query Frame = 1
Query:    4 ERLLQFLSLGVNRVSMGVQSFDADLLRSCGRAHSLQDVYDAVQVMRKAGVENFSIDLMR*IPTLNCTPWTGNYLLTI 234
            E+L   + LGVNRVS+GVQ+F  +LL+SCGRAH L++VYDA++++   GVEN+S+DL+  +P      W  +  LT+
Sbjct:  160 EKLKGMMELGVNRVSLGVQAFQEELLKSCGRAHGLKEVYDAIEIVGSCGVENWSMDLISSLPHQTPEMWEESLRLTV 236          
BLAST of mRNA_H-paniculata_contig19897.5081.1 vs. uniprot
Match: A0A8K0GTE6_9ROSA (Uncharacterized protein n=1 Tax=Rhamnella rubrinervis TaxID=2594499 RepID=A0A8K0GTE6_9ROSA)

HSP 1 Score: 81.3 bits (199), Expect = 3.170e-16
Identity = 35/77 (45.45%), Postives = 57/77 (74.03%), Query Frame = 1
Query:    4 ERLLQFLSLGVNRVSMGVQSFDADLLRSCGRAHSLQDVYDAVQVMRKAGVENFSIDLMR*IPTLNCTPWTGNYLLTI 234
            +++ + L LGVNRVS+GVQ+F  +LL++CGRAH L++VY+A+++++  GVEN+S+DL+  +P      W  +  LTI
Sbjct:  168 KKMKEMLDLGVNRVSLGVQAFQEELLKACGRAHGLKEVYEAIEIVKSCGVENWSMDLISSLPHQTTEMWEESLRLTI 244          
BLAST of mRNA_H-paniculata_contig19897.5081.1 vs. uniprot
Match: A0A7J7NDS4_9MAGN (Radical S-adenosyl methionine domain-containing protein 1, mitochondrial n=1 Tax=Kingdonia uniflora TaxID=39325 RepID=A0A7J7NDS4_9MAGN)

HSP 1 Score: 81.3 bits (199), Expect = 3.350e-16
Identity = 36/77 (46.75%), Postives = 56/77 (72.73%), Query Frame = 1
Query:    4 ERLLQFLSLGVNRVSMGVQSFDADLLRSCGRAHSLQDVYDAVQVMRKAGVENFSIDLMR*IPTLNCTPWTGNYLLTI 234
            E++   L LGVNRVS+GVQ+F  +LLRSCGRAH +++VY+A++++R +GVEN+S+DL+  +P      W  +  L +
Sbjct:  259 EKMNGLLELGVNRVSLGVQAFQEELLRSCGRAHGIEEVYEAIEIIRSSGVENWSMDLISSLPHQTPEMWEESLRLAV 335          
The following BLAST results are available for this feature:
BLAST of mRNA_H-paniculata_contig19897.5081.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 vs UniRef90)
Total hits: 25
Match NameE-valueIdentityDescription
D7FRC0_ECTSI2.590e-1962.86Radical S-adenosyl methionine domain-containing pr... [more]
A0A1S3TYQ3_VIGRR8.140e-1949.35Radical S-adenosyl methionine domain-containing pr... [more]
A0A6H5K982_9PHAE8.750e-1961.43Radical SAM core domain-containing protein n=1 Tax... [more]
A0A7S0SV04_9STRA4.130e-1850.72Hypothetical protein (Fragment) n=1 Tax=Chromulina... [more]
UPI00101720F02.020e-1749.35uncharacterized protein LOC114162341 isoform X2 n=... [more]
A0A6I9SRW2_SESIN2.330e-1647.37Radical S-adenosyl methionine domain-containing pr... [more]
UPI001CFBF85F3.010e-1647.37heme chaperone HemW n=1 Tax=Mangifera indica TaxID... [more]
A0A2P6P578_ROSCH3.130e-1648.05Radical S-adenosyl methionine domain-containing pr... [more]
A0A8K0GTE6_9ROSA3.170e-1645.45Uncharacterized protein n=1 Tax=Rhamnella rubriner... [more]
A0A7J7NDS4_9MAGN3.350e-1646.75Radical S-adenosyl methionine domain-containing pr... [more]

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Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
H-paniculata_contig19897contigH-paniculata_contig19897:4331..4613 -
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 vs UniRef902022-09-19
OGS1.0 of Halopteris paniculata Hal_grac_a_UBK monoicous2021-02-24
Properties
Property NameValue
Best eggNOG OGNA|NA|NA
Exons2
Model size234
Cds size135
Stop1
Taxonomic scopeEukaryota
Seed ortholog score70.1
Seed ortholog evalue3e-10
Seed eggNOG ortholog2880.D7FRC0
Hectar predicted targeting categoryno signal peptide or anchor
EggNOG free text desc.coproporphyrinogen oxidase activity
EggNOG OGs2QRH0@2759,COG0635@1
COG Functional cat.H
Best tax levelEukaryota
Start1
Relationships

The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_H-paniculata_contig19897.5081.1prot_H-paniculata_contig19897.5081.1Halopteris paniculata Hal_grac_a_UBK monoicouspolypeptideH-paniculata_contig19897 4382..4565 -


The following UTR feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1622929501.5151243-UTR-H-paniculata_contig19897:4330..43811622929501.5151243-UTR-H-paniculata_contig19897:4330..4381Halopteris paniculata Hal_grac_a_UBK monoicousUTRH-paniculata_contig19897 4331..4381 -
1691480888.5532424-UTR-H-paniculata_contig19897:4330..43811691480888.5532424-UTR-H-paniculata_contig19897:4330..4381Halopteris paniculata Hal_grac_a_UBK monoicousUTRH-paniculata_contig19897 4331..4381 -
1622929501.5633144-UTR-H-paniculata_contig19897:4565..46131622929501.5633144-UTR-H-paniculata_contig19897:4565..4613Halopteris paniculata Hal_grac_a_UBK monoicousUTRH-paniculata_contig19897 4566..4613 -
1691480888.5985432-UTR-H-paniculata_contig19897:4565..46131691480888.5985432-UTR-H-paniculata_contig19897:4565..4613Halopteris paniculata Hal_grac_a_UBK monoicousUTRH-paniculata_contig19897 4566..4613 -


The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1622929501.5296953-CDS-H-paniculata_contig19897:4381..43831622929501.5296953-CDS-H-paniculata_contig19897:4381..4383Halopteris paniculata Hal_grac_a_UBK monoicousCDSH-paniculata_contig19897 4382..4383 -
1691480888.575084-CDS-H-paniculata_contig19897:4381..43831691480888.575084-CDS-H-paniculata_contig19897:4381..4383Halopteris paniculata Hal_grac_a_UBK monoicousCDSH-paniculata_contig19897 4382..4383 -
1622929501.5459354-CDS-H-paniculata_contig19897:4432..45651622929501.5459354-CDS-H-paniculata_contig19897:4432..4565Halopteris paniculata Hal_grac_a_UBK monoicousCDSH-paniculata_contig19897 4433..4565 -
1691480888.58677-CDS-H-paniculata_contig19897:4432..45651691480888.58677-CDS-H-paniculata_contig19897:4432..4565Halopteris paniculata Hal_grac_a_UBK monoicousCDSH-paniculata_contig19897 4433..4565 -


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_H-paniculata_contig19897.5081.1

>prot_H-paniculata_contig19897.5081.1 ID=prot_H-paniculata_contig19897.5081.1|Name=mRNA_H-paniculata_contig19897.5081.1|organism=Halopteris paniculata Hal_grac_a_UBK monoicous|type=polypeptide|length=45bp
MGVQSFDADLLRSCGRAHSLQDVYDAVQVMRKAGVENFSIDLMR*
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mRNA from alignment at H-paniculata_contig19897:4331..4613-

Legend: UTRpolypeptideCDS
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_H-paniculata_contig19897.5081.1 ID=mRNA_H-paniculata_contig19897.5081.1|Name=mRNA_H-paniculata_contig19897.5081.1|organism=Halopteris paniculata Hal_grac_a_UBK monoicous|type=mRNA|length=283bp|location=Sequence derived from alignment at H-paniculata_contig19897:4331..4613- (Halopteris paniculata Hal_grac_a_UBK monoicous)
CAGGAGAGGCTTCTTCAGTTTCTGTCCCTCGGTGTGAATCGCGTGAGCAT GGGGGTGCAATCATTCGACGCGGACCTTCTCCGGTCGTGTGGAAGGGCGC ATTCTCTGCAAGATGTATACGACGCAGTGCAAGTGATGCGGAAGGCTGGT GTCGAGAACTTCAGCATCGATCTCATGAGGTGTGCGTGCTACTTAGTTTA TAGCTAGACCGCTTGCAATAATATGGGGAGAGATTCCTACGTTGAATTGC ACGCCCTGGACAGGTAACTATTTGTTGACTATA
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Coding sequence (CDS) from alignment at H-paniculata_contig19897:4331..4613-

>mRNA_H-paniculata_contig19897.5081.1 ID=mRNA_H-paniculata_contig19897.5081.1|Name=mRNA_H-paniculata_contig19897.5081.1|organism=Halopteris paniculata Hal_grac_a_UBK monoicous|type=CDS|length=270bp|location=Sequence derived from alignment at H-paniculata_contig19897:4331..4613- (Halopteris paniculata Hal_grac_a_UBK monoicous)
ATGGGGGTGCAATCATTCGACGCGGACCTTCTCCGGTCGTGTGGAAGGGC
GCATTCTCTGCAAGATGTATACGACGCAGTGCAAGTGATGCGGAAGGCTG
GTGTCGAGAACTTCAGCATCGATCTCATGAGGTATGGGGGTGCAATCATT
CGACGCGGACCTTCTCCGGTCGTGTGGAAGGGCGCATTCTCTGCAAGATG
TATACGACGCAGTGCAAGTGATGCGGAAGGCTGGTGTCGAGAACTTCAGC
ATCGATCTCATGAGGTAGAG
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