mRNA_H-paniculata_contig19897.5081.1 (mRNA) Halopteris paniculata Hal_grac_a_UBK monoicous
|
Overview
Homology
BLAST of mRNA_H-paniculata_contig19897.5081.1 vs. uniprot
Match: D7FRC0_ECTSI (Radical S-adenosyl methionine domain-containing protein 1, mitochondrial n=1 Tax=Ectocarpus siliculosus TaxID=2880 RepID=D7FRC0_ECTSI) HSP 1 Score: 90.1 bits (222), Expect = 2.590e-19 Identity = 44/70 (62.86%), Postives = 53/70 (75.71%), Query Frame = 1
Query: 1 QERLLQFLSLGVNRVSMGVQSFDADLLRSCGRAHSLQDVYDAVQVMRKAGVENFSIDLMR*IPTLNCTPW 210
+ RL FL+LG+ RVSMGVQSFDA LL +CGRAHSL DVY AV+++RKA V+NFSIDLM +P W
Sbjct: 181 EARLEAFLALGITRVSMGVQSFDAGLLEACGRAHSLADVYQAVELLRKAKVDNFSIDLMSGLPKQTVEQW 250
BLAST of mRNA_H-paniculata_contig19897.5081.1 vs. uniprot
Match: A0A1S3TYQ3_VIGRR (Radical S-adenosyl methionine domain-containing protein 1, mitochondrial n=6 Tax=Phaseoleae TaxID=163735 RepID=A0A1S3TYQ3_VIGRR) HSP 1 Score: 88.6 bits (218), Expect = 8.140e-19 Identity = 38/77 (49.35%), Postives = 59/77 (76.62%), Query Frame = 1
Query: 4 ERLLQFLSLGVNRVSMGVQSFDADLLRSCGRAHSLQDVYDAVQVMRKAGVENFSIDLMR*IPTLNCTPWTGNYLLTI 234
E++ + ++LGVNRVS+GVQ+F +LLR+CGRAH +Q++++A+ V++ GVEN+SIDL+ +P NC W + LTI
Sbjct: 169 EKMREMIALGVNRVSLGVQAFQEELLRACGRAHGVQEIHEAISVVKSCGVENWSIDLIASLPHQNCEMWEESLRLTI 245
BLAST of mRNA_H-paniculata_contig19897.5081.1 vs. uniprot
Match: A0A6H5K982_9PHAE (Radical SAM core domain-containing protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5K982_9PHAE) HSP 1 Score: 88.6 bits (218), Expect = 8.750e-19 Identity = 43/70 (61.43%), Postives = 52/70 (74.29%), Query Frame = 1
Query: 1 QERLLQFLSLGVNRVSMGVQSFDADLLRSCGRAHSLQDVYDAVQVMRKAGVENFSIDLMR*IPTLNCTPW 210
+ RL FL+LG+ RVSMGVQSFD LL +CGRAHSL DVY AV+++RKA V+NFSIDLM +P W
Sbjct: 122 EARLEAFLALGITRVSMGVQSFDGGLLEACGRAHSLADVYQAVELLRKAKVDNFSIDLMSGLPKQTVEQW 191
BLAST of mRNA_H-paniculata_contig19897.5081.1 vs. uniprot
Match: A0A7S0SV04_9STRA (Hypothetical protein (Fragment) n=1 Tax=Chromulina nebulosa TaxID=96789 RepID=A0A7S0SV04_9STRA) HSP 1 Score: 82.8 bits (203), Expect = 4.130e-18 Identity = 35/69 (50.72%), Postives = 52/69 (75.36%), Query Frame = 1
Query: 4 ERLLQFLSLGVNRVSMGVQSFDADLLRSCGRAHSLQDVYDAVQVMRKAGVENFSIDLMR*IPTLNCTPW 210
+RL Q +G+NR+SMGVQSFD ++L+SCGRAHSL D+Y+A+ + K+ +NFSIDL+ +P ++ W
Sbjct: 9 KRLQQLKQIGINRISMGVQSFDENMLKSCGRAHSLSDIYNALDALNKSDFDNFSIDLISSLPGMSMNEW 77
BLAST of mRNA_H-paniculata_contig19897.5081.1 vs. uniprot
Match: UPI00101720F0 (uncharacterized protein LOC114162341 isoform X2 n=1 Tax=Vigna unguiculata TaxID=3917 RepID=UPI00101720F0) HSP 1 Score: 83.6 bits (205), Expect = 2.020e-17 Identity = 38/77 (49.35%), Postives = 58/77 (75.32%), Query Frame = 1
Query: 4 ERLLQFLSLGVNRVSMGVQSFDADLLRSCGRAHSLQDVYDAVQVMRKAGVENFSIDLMR*IPTLNCTPWTGNYLLTI 234
E++ + ++LGVNRVS+GVQ+F +LLRSCGRAH +Q+V++A+ V++ GVEN+SIDL+ +P + W + LTI
Sbjct: 170 EKMREMVALGVNRVSLGVQAFQEELLRSCGRAHGVQEVHEAISVVKSCGVENWSIDLIASLPHQSWEMWEESLRLTI 246
BLAST of mRNA_H-paniculata_contig19897.5081.1 vs. uniprot
Match: A0A6I9SRW2_SESIN (Radical S-adenosyl methionine domain-containing protein 1, mitochondrial n=1 Tax=Sesamum indicum TaxID=4182 RepID=A0A6I9SRW2_SESIN) HSP 1 Score: 81.6 bits (200), Expect = 2.330e-16 Identity = 36/76 (47.37%), Postives = 58/76 (76.32%), Query Frame = 1
Query: 7 RLLQFLSLGVNRVSMGVQSFDADLLRSCGRAHSLQDVYDAVQVMRKAGVENFSIDLMR*IPTLNCTPWTGNYLLTI 234
+L + ++LGVNRVS+GVQ+F +LLR+CGRAH +++VY+AV++++ GVEN+S+DL+ +P + W + LTI
Sbjct: 173 KLKELMNLGVNRVSLGVQAFQEELLRACGRAHGVREVYEAVKIVKSCGVENWSMDLISSLPHQTLSIWEQSLQLTI 248
BLAST of mRNA_H-paniculata_contig19897.5081.1 vs. uniprot
Match: UPI001CFBF85F (heme chaperone HemW n=1 Tax=Mangifera indica TaxID=29780 RepID=UPI001CFBF85F) HSP 1 Score: 81.3 bits (199), Expect = 3.010e-16 Identity = 36/76 (47.37%), Postives = 56/76 (73.68%), Query Frame = 1
Query: 7 RLLQFLSLGVNRVSMGVQSFDADLLRSCGRAHSLQDVYDAVQVMRKAGVENFSIDLMR*IPTLNCTPWTGNYLLTI 234
+L + + LGVNRVS+GVQ+F DLL+SCGRAH +++VY+A+++++ GVEN+S+DL+ +P W + LTI
Sbjct: 168 KLKELMELGVNRVSLGVQAFQDDLLKSCGRAHGVKEVYEAIEIVKSCGVENWSMDLISSLPHQTPEMWEESLRLTI 243
BLAST of mRNA_H-paniculata_contig19897.5081.1 vs. uniprot
Match: A0A2P6P578_ROSCH (Radical S-adenosyl methionine domain-containing protein 1, mitochondrial n=1 Tax=Rosa chinensis TaxID=74649 RepID=A0A2P6P578_ROSCH) HSP 1 Score: 81.3 bits (199), Expect = 3.130e-16 Identity = 37/77 (48.05%), Postives = 55/77 (71.43%), Query Frame = 1
Query: 4 ERLLQFLSLGVNRVSMGVQSFDADLLRSCGRAHSLQDVYDAVQVMRKAGVENFSIDLMR*IPTLNCTPWTGNYLLTI 234
E+L + LGVNRVS+GVQ+F +LL+SCGRAH L++VYDA++++ GVEN+S+DL+ +P W + LT+
Sbjct: 160 EKLKGMMELGVNRVSLGVQAFQEELLKSCGRAHGLKEVYDAIEIVGSCGVENWSMDLISSLPHQTPEMWEESLRLTV 236
BLAST of mRNA_H-paniculata_contig19897.5081.1 vs. uniprot
Match: A0A8K0GTE6_9ROSA (Uncharacterized protein n=1 Tax=Rhamnella rubrinervis TaxID=2594499 RepID=A0A8K0GTE6_9ROSA) HSP 1 Score: 81.3 bits (199), Expect = 3.170e-16 Identity = 35/77 (45.45%), Postives = 57/77 (74.03%), Query Frame = 1
Query: 4 ERLLQFLSLGVNRVSMGVQSFDADLLRSCGRAHSLQDVYDAVQVMRKAGVENFSIDLMR*IPTLNCTPWTGNYLLTI 234
+++ + L LGVNRVS+GVQ+F +LL++CGRAH L++VY+A+++++ GVEN+S+DL+ +P W + LTI
Sbjct: 168 KKMKEMLDLGVNRVSLGVQAFQEELLKACGRAHGLKEVYEAIEIVKSCGVENWSMDLISSLPHQTTEMWEESLRLTI 244
BLAST of mRNA_H-paniculata_contig19897.5081.1 vs. uniprot
Match: A0A7J7NDS4_9MAGN (Radical S-adenosyl methionine domain-containing protein 1, mitochondrial n=1 Tax=Kingdonia uniflora TaxID=39325 RepID=A0A7J7NDS4_9MAGN) HSP 1 Score: 81.3 bits (199), Expect = 3.350e-16 Identity = 36/77 (46.75%), Postives = 56/77 (72.73%), Query Frame = 1
Query: 4 ERLLQFLSLGVNRVSMGVQSFDADLLRSCGRAHSLQDVYDAVQVMRKAGVENFSIDLMR*IPTLNCTPWTGNYLLTI 234
E++ L LGVNRVS+GVQ+F +LLRSCGRAH +++VY+A++++R +GVEN+S+DL+ +P W + L +
Sbjct: 259 EKMNGLLELGVNRVSLGVQAFQEELLRSCGRAHGIEEVYEAIEIIRSSGVENWSMDLISSLPHQTPEMWEESLRLAV 335 The following BLAST results are available for this feature:
BLAST of mRNA_H-paniculata_contig19897.5081.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 vs UniRef90) Total hits: 25
Pagesback to topAlignments
The following features are aligned
Analyses
This mRNA is derived from or has results from the following analyses
Properties
Relationships
The following polypeptide feature(s) derives from this mRNA:
The following UTR feature(s) are a part of this mRNA:
The following CDS feature(s) are a part of this mRNA:
Sequences
The following sequences are available for this feature:
protein sequence of mRNA_H-paniculata_contig19897.5081.1 >prot_H-paniculata_contig19897.5081.1 ID=prot_H-paniculata_contig19897.5081.1|Name=mRNA_H-paniculata_contig19897.5081.1|organism=Halopteris paniculata Hal_grac_a_UBK monoicous|type=polypeptide|length=45bp MGVQSFDADLLRSCGRAHSLQDVYDAVQVMRKAGVENFSIDLMR*back to top mRNA from alignment at H-paniculata_contig19897:4331..4613- Legend: UTRpolypeptideCDS Hold the cursor over a type above to highlight its positions in the sequence below.>mRNA_H-paniculata_contig19897.5081.1 ID=mRNA_H-paniculata_contig19897.5081.1|Name=mRNA_H-paniculata_contig19897.5081.1|organism=Halopteris paniculata Hal_grac_a_UBK monoicous|type=mRNA|length=283bp|location=Sequence derived from alignment at H-paniculata_contig19897:4331..4613- (Halopteris paniculata Hal_grac_a_UBK monoicous)back to top Coding sequence (CDS) from alignment at H-paniculata_contig19897:4331..4613- >mRNA_H-paniculata_contig19897.5081.1 ID=mRNA_H-paniculata_contig19897.5081.1|Name=mRNA_H-paniculata_contig19897.5081.1|organism=Halopteris paniculata Hal_grac_a_UBK monoicous|type=CDS|length=270bp|location=Sequence derived from alignment at H-paniculata_contig19897:4331..4613- (Halopteris paniculata Hal_grac_a_UBK monoicous)back to top |