mRNA_H-paniculata_contig1977.5032.1 (mRNA) Halopteris paniculata Hal_grac_a_UBK monoicous

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_H-paniculata_contig1977.5032.1
Unique NamemRNA_H-paniculata_contig1977.5032.1
TypemRNA
OrganismHalopteris paniculata Hal_grac_a_UBK monoicous (Halopteris paniculata Hal_grac_a_UBK monoicous)
Homology
[Close]
BLAST of mRNA_H-paniculata_contig1977.5032.1 vs. uniprot
Match: D7FLT7_ECTSI (Uncharacterized protein n=1 Tax=Ectocarpus siliculosus TaxID=2880 RepID=D7FLT7_ECTSI)

HSP 1 Score: 171 bits (434), Expect = 5.360e-47
Identity = 98/170 (57.65%), Postives = 123/170 (72.35%), Query Frame = 2 
Query:  140 PCLTESFSVHFR---STATHRSTSLGRCDLAPSMTLRGERSAVDRFVGAALLGGSLLVAGVGIVSGVDVARADVSISPRCISGEGPQCDDLTEGSELIKTLQAKSAQNKEKYIRQTLDTYNDHNFKADYFRAENKHMVRHKDGKYEILTNADYVEAERAGKVKNDVFLNE 640
            P   ESF+V      S+ +  STSL RC    +M        ++R +GA L+GG+L      I   +DVARADVSISPRCI+GEG QC+DL EG+ELIK+LQAKSA +K++Y ++TLDTYN HNFK DYF+AE+KHMV+H  GKYEILTNA+Y  AE+AGKV+NDVFL E
Sbjct:   13 PSCVESFAVLCTAPSSSTSPVSTSL-RCRSTRTMMTLPTAGDLNRALGAVLVGGAL------ITGAMDVARADVSISPRCITGEGAQCEDLAEGNELIKSLQAKSAISKDRYFQETLDTYNVHNFK-DYFKAESKHMVKHNTGKYEILTNAEYAAAEKAGKVRNDVFLGE 174
[Close]
BLAST of mRNA_H-paniculata_contig1977.5032.1 vs. uniprot
Match: A0A7S2UQ54_9STRA (Hypothetical protein (Fragment) n=1 Tax=Attheya septentrionalis TaxID=420275 RepID=A0A7S2UQ54_9STRA)

HSP 1 Score: 75.9 bits (185), Expect = 3.420e-12
Identity = 46/118 (38.98%), Postives = 72/118 (61.02%), Query Frame = 2 
Query:  290 GSLLVAGVGIVSGVDVARADVSI---SPRCISGEGPQCDDLTEGSELIKTLQAKSAQNKEKYIRQTLDTYNDHNFKADYFRAEN--KHMVRHKDGKYEILTNADYVEAERAGKVKNDV 628
            G L  A +G+ SG+ ++    +    S RC SGEG  C DL EG++ IK+LQ KSA NKE Y ++ L+ YN  N+  D+F +    K++V+  DGK+ + T+A+    + AGK+K ++
Sbjct:   56 GLLQTAMMGVASGLFLSSTPANAVLSSGRCASGEGEGCTDLAEGNDYIKSLQIKSAANKEMYAQEALNAYNMKNY-PDFFASLTPPKYLVKGLDGKFLVYTDAELSVLKGAGKIKLEI 172
[Close]
BLAST of mRNA_H-paniculata_contig1977.5032.1 vs. uniprot
Match: A0A1Z5KK89_FISSO (Uncharacterized protein n=2 Tax=Fistulifera solaris TaxID=1519565 RepID=A0A1Z5KK89_FISSO)

HSP 1 Score: 65.5 bits (158), Expect = 6.280e-9
Identity = 38/102 (37.25%), Postives = 62/102 (60.78%), Query Frame = 2 
Query:  338 ARADVSISPRCISGEGPQCDDLTEGSELIKTLQAKSAQNKEKYIRQTLDTYNDHNFKADYFRAENKHMVRHKDGKYEILTNADYVEAERAGKVKNDVFLNEG 643
            A A +S S  C +G G  C DL+EG+ELI++LQ KSA N+E+Y ++ LD Y   N+  D+F    K +V+  DG +  L +++  + ++ GKV  ++   +G
Sbjct:   42 AEAVIS-SKYCSAGVGEGCGDLSEGNELIRSLQEKSAINRERYQQEALDAYYMKNY-PDFFGVVGKTLVKKPDGTFVALADSEVEKLKQEGKVTFEIPRTKG 141
The following BLAST results are available for this feature:
BLAST of mRNA_H-paniculata_contig1977.5032.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 vs UniRef90)
Total hits: 3
Match NameE-valueIdentityDescription
D7FLT7_ECTSI5.360e-4757.65Uncharacterized protein n=1 Tax=Ectocarpus silicul... [more]
A0A7S2UQ54_9STRA3.420e-1238.98Hypothetical protein (Fragment) n=1 Tax=Attheya se... [more]
A0A1Z5KK89_FISSO6.280e-937.25Uncharacterized protein n=2 Tax=Fistulifera solari... [more]
back to top
Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
H-paniculata_contig1977contigH-paniculata_contig1977:10409..13684 -
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 vs UniRef902022-09-19
OGS1.0 of Halopteris paniculata Hal_grac_a_UBK monoicous2021-02-24
Properties
Property NameValue
Taxonomic scopeEukaryota
Seed ortholog score175.6
Seed ortholog evalue2.1e-41
Seed eggNOG ortholog2880.D7FLT7
Hectar predicted targeting categorysignal peptide
EggNOG OGs2CACH@1,2SH2H@2759
Ec32 ortholog descriptionconserved unknown protein
Ec32 orthologEc-26_001300.1
Best tax levelEukaryota
Best eggNOG OGNA|NA|NA
Exons4
Model size1686
Cds size555
Stop1
Start1
Relationships

The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_H-paniculata_contig1977.5032.1prot_H-paniculata_contig1977.5032.1Halopteris paniculata Hal_grac_a_UBK monoicouspolypeptideH-paniculata_contig1977 11449..13593 -


The following UTR feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1622929493.8304422-UTR-H-paniculata_contig1977:10408..114481622929493.8304422-UTR-H-paniculata_contig1977:10408..11448Halopteris paniculata Hal_grac_a_UBK monoicousUTRH-paniculata_contig1977 10409..11448 -
1691480885.9929361-UTR-H-paniculata_contig1977:10408..114481691480885.9929361-UTR-H-paniculata_contig1977:10408..11448Halopteris paniculata Hal_grac_a_UBK monoicousUTRH-paniculata_contig1977 10409..11448 -
1622929493.9017384-UTR-H-paniculata_contig1977:13593..136841622929493.9017384-UTR-H-paniculata_contig1977:13593..13684Halopteris paniculata Hal_grac_a_UBK monoicousUTRH-paniculata_contig1977 13594..13684 -
1691480886.043576-UTR-H-paniculata_contig1977:13593..136841691480886.043576-UTR-H-paniculata_contig1977:13593..13684Halopteris paniculata Hal_grac_a_UBK monoicousUTRH-paniculata_contig1977 13594..13684 -


The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1622929493.8536553-CDS-H-paniculata_contig1977:11448..115411622929493.8536553-CDS-H-paniculata_contig1977:11448..11541Halopteris paniculata Hal_grac_a_UBK monoicousCDSH-paniculata_contig1977 11449..11541 -
1691480886.0060897-CDS-H-paniculata_contig1977:11448..115411691480886.0060897-CDS-H-paniculata_contig1977:11448..11541Halopteris paniculata Hal_grac_a_UBK monoicousCDSH-paniculata_contig1977 11449..11541 -
1622929493.8667233-CDS-H-paniculata_contig1977:11871..119151622929493.8667233-CDS-H-paniculata_contig1977:11871..11915Halopteris paniculata Hal_grac_a_UBK monoicousCDSH-paniculata_contig1977 11872..11915 -
1691480886.0150023-CDS-H-paniculata_contig1977:11871..119151691480886.0150023-CDS-H-paniculata_contig1977:11871..11915Halopteris paniculata Hal_grac_a_UBK monoicousCDSH-paniculata_contig1977 11872..11915 -
1622929493.8769689-CDS-H-paniculata_contig1977:12296..124371622929493.8769689-CDS-H-paniculata_contig1977:12296..12437Halopteris paniculata Hal_grac_a_UBK monoicousCDSH-paniculata_contig1977 12297..12437 -
1691480886.0239575-CDS-H-paniculata_contig1977:12296..124371691480886.0239575-CDS-H-paniculata_contig1977:12296..12437Halopteris paniculata Hal_grac_a_UBK monoicousCDSH-paniculata_contig1977 12297..12437 -
1622929493.8879426-CDS-H-paniculata_contig1977:13316..135931622929493.8879426-CDS-H-paniculata_contig1977:13316..13593Halopteris paniculata Hal_grac_a_UBK monoicousCDSH-paniculata_contig1977 13317..13593 -
1691480886.0338497-CDS-H-paniculata_contig1977:13316..135931691480886.0338497-CDS-H-paniculata_contig1977:13316..13593Halopteris paniculata Hal_grac_a_UBK monoicousCDSH-paniculata_contig1977 13317..13593 -


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_H-paniculata_contig1977.5032.1

>prot_H-paniculata_contig1977.5032.1 ID=prot_H-paniculata_contig1977.5032.1|Name=mRNA_H-paniculata_contig1977.5032.1|organism=Halopteris paniculata Hal_grac_a_UBK monoicous|type=polypeptide|length=185bp
MHFFYISFAALLISWTPCLTESFSVHFRSTATHRSTSLGRCDLAPSMTLR
GERSAVDRFVGAALLGGSLLVAGVGIVSGVDVARADVSISPRCISGEGPQ
CDDLTEGSELIKTLQAKSAQNKEKYIRQTLDTYNDHNFKADYFRAENKHM
VRHKDGKYEILTNADYVEAERAGKVKNDVFLNEG*
back to top

mRNA from alignment at H-paniculata_contig1977:10409..13684-

Legend: UTRpolypeptideCDS
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_H-paniculata_contig1977.5032.1 ID=mRNA_H-paniculata_contig1977.5032.1|Name=mRNA_H-paniculata_contig1977.5032.1|organism=Halopteris paniculata Hal_grac_a_UBK monoicous|type=mRNA|length=3276bp|location=Sequence derived from alignment at H-paniculata_contig1977:10409..13684- (Halopteris paniculata Hal_grac_a_UBK monoicous)
TGAGTAGATACCCGTTGTATTGTAAAAAACTCGTCGAGCGTGTTCCGACT
TAGCTTCATCATTCACGTACTCTGCCGTGGTACGATACATCATGCACTTC
TTCTACATTTCCTTTGCTGCACTCTTGATATCATGGACTCCATGCCTAAC
GGAGAGCTTCTCGGTGCATTTCCGTTCTACGGCCACCCACCGTTCCACGT
CTCTTGGACGTTGCGACCTCGCACCTAGTATGACGTTGCGAGGAGAGCGA
AGTGCGGTGGATAGATTTGTCGGCGCGGCGTTGCTTGGGGGCTCGCTGCT
GGTGGCTGGGGTTGGGATTGTTTCTGGTGTTGATGTCGCGAGAGCGGACG
TTTCCATTAGTCCCAGATGTGAGTTACGTGGTTGATGTGGTACCACTATT
TGATCATGCGTCAGCAGTCTCGCAGTACAGGTTCGTGAAAAACGTAACGG
GCCGCATCCTTTTATGTCACCACACCTAAACCTCCCCAGATTTCCAAGTT
TAAGCAATGTTTAACGTTTCCAGTGTCGGGTTGTTGGAAAAAGCTTGAAC
ATGTTTTTGCGTGCGGTTGCCCTCCGTTGATTATGAGATCCGTTGCATGT
TCTATGCAGTGCTGTAGCCCTCTAAACATGAATATATTATGTTACACGGG
TGCGGGCAGTCCCCATTTTCCGTATGCATACGATACATGATGCCATTCAG
GCAAAAGGCTTATAACACCTTTCTGCCGGCTTTGCACACGATGGTTGTTC
CACTGCGTCACACACGGCACCCAAAACGCAAAACGCGCTTGTAGAATGGC
TACCGGCATCCAATATCCAGGGTGATAGCACTGGACAGCCCTGTCTCAAC
TGTCTAAACAATGGATTTTAGGCGATAGAAATCCGACAGACTCACCTTGT
TGCGGGGGAATCCCAATACCTCGAGGACGGGGCAGGATACTACATTATGC
ACTCCTGGTGTTAAGATTCGTGCAGACTGTATTTTAAAGCTGTTCACTCC
ATCAACAGCTGTATATGACTATGGGGGGGGTTATATATTGTCTAGTGCTA
GAGTAGCTGACTGACCTCCTTATCGGCGCTGCGATCGACTGGGCGATTTT
GAATCTCTATCCTTTTCAGATCCAGGCACATACCTGCATACTCACAGAAC
TTACGCTTGTCGACAGTACGTTCTGTGAAGAACATGCGAACTGTTGATTG
TGTCGTGTTGCGTTCGTCCTGGACGACTCCGTACGTGATGTGTCCAGGTA
TCTCCGGCGAGGGTCCTCAGTGCGACGACCTGACAGAAGGAAGCGAATTG
ATCAAGACCCTGCAGGCCAAGTCCGCGCAAAACAAGGAGAAGTACATTAG
GCAAACTCTCGACACGTATAACGACCACAACTTCAAAGGTAACCTCGAGA
TAGCGGAGTAACAGACGACAGTACTGTTATGACGAAGGAATAGGCTGCCG
TCTGCACTTTAGGAAGGGCTGACCATTTCTGCCCTGGATTCTCTTCAAGG
CTGCAAGCAGCATGTTCTTCCGCCATTTTACCAAAGATGCAGTTGCCCCC
ATTTGCTGGGGGAAAACGGTTGGTCATCTGGGTATTGCTTTCAATTAGTG
CTCATCTGTGCTAGATATCCTACATGATGCATCGAAGTTGTTCATATCAT
TTTATTGAGCAAGCAAACGATATTTTCCCTTGTTAATCTGAGACTACCTC
TGGCATGTCGTGAGTACCAATCGTAGCCCGCCGCGTGTTTTTTTTGCGGT
TGCGATATGATATTTTGAGCAGACTATTTCCGGGCGGAGAACAAGCACAT
GGTACGTCACAAGGTGAGCTTACCGTACCAACCTTTTTTTTTAGTGGTGT
TGAAACTGCCTGTGCTCTGTCCCTCGCTGCCATCTTTTGTTTCTATAATA
GTTGATTTACTGGACAAATGCAAGGTTGGGTCAACTGGGCCGAGGAGGAA
TGCGGTAGATTGTATGAGGAAGCGCACAGTACCTCGGATCTATGCGTTAG
TTTCCTCCGCACCGCACCCACAGCTGTTAACAAACATGACGATATATTGT
AAATCTGCAACGTTCTCCCAGCAGCCCGCCTGAAACCAAAAATTCCTCTT
TATGCCATCCCCGCCGGACGTGCGTTTGCGCGCCGAAACCCAGGATGGTA
AGTACGAGATTTTGACGAACGCAGACTACGTCGAGGCGGAGAGAGCGGGG
AAAGTGAAGAACGACGTGTTCTTGAACGAAGGGTGATGGCAGCAGCAGCG
GTGTTGCTGGCCATGTCACTTTTGTTGAATCTTTGGACTGCACTTTTCGT
AGGTAAAGGCATGCGTTTCGGAGCTGTGTTCCTGTTGCCGTAATATCATA
AGGGCGAGTGGGATTTCGCACCGTCATGAACTAATGTAAATTTACACGAT
ATGAGCAACGAAGTTGACCTTACAGCACGTGGGGAGTAGGCGCGGGAGTA
ATAACATCCTCAAAGTACCTGTGTGGTGTGCTGACAACAGACACGTGTAC
ACGGAAACCGCCGGCGCATGGCGCGCTCATAATGACTGCGTTCGTCCCTT
CGGAACCTCGATATCATGTTTAGTAAAGTTTTTCTGCTTGATCGGTCATG
TGCATCGTCTAGATTGCTTTTTTCCGGCATACATTGCGAGTGGGGCCTCT
TTGTTTCGGTAAGATATGCCTGCCACATCAGCACGGTTGAGCGGCGGGGC
TGCTGGGATGTTGGGGGTCCGTGTGTAATGAAGTTAATAAGGCCCAAAGG
AGAAAGGTCTGTCATTGCTCCTTCACGATCACTCCAGATTGTCATCACGT
CCTCCAAAGAACAATATACGTATTCGTGGCAGCGGTATATAGTAACTCTA
AGGTGATGATACGGCATTCGGTATTGCCATCACTCACTTATCTCTCCCAT
TTCTGTTGCGGTGAATCGCCAAAGAATGCCCCTGTACAGTTGCGGCCCAC
TACTAAAAAATCGGTCAGGAAGAAAATCATGCTGTTGTCTTTACTCATGA
GCGAATTTTGGATAAGAAATCGAGCCCGAATAGTGGCTTACTACTTTGCA
TAGGAAAATCGTAATGGAGATAAGGCTGTGGATCTCCAGAGCTCGATATA
GAAAAGAAGATTCGAGCCTCATCCGAAGAAAAGGGATTCTTACTAGCAGG
CCGTAACTGTAAGTAAGAGACACAAAAGCTGAGTTTATTAGCCTGTGAAA
TGGGGTGGAGTAACGCCTCATATAACTGGAAAATGCTACTGTAGAGCTCT
TCTTCTAGAGGAATATGTTTAAACAC
back to top

Coding sequence (CDS) from alignment at H-paniculata_contig1977:10409..13684-

>mRNA_H-paniculata_contig1977.5032.1 ID=mRNA_H-paniculata_contig1977.5032.1|Name=mRNA_H-paniculata_contig1977.5032.1|organism=Halopteris paniculata Hal_grac_a_UBK monoicous|type=CDS|length=1110bp|location=Sequence derived from alignment at H-paniculata_contig1977:10409..13684- (Halopteris paniculata Hal_grac_a_UBK monoicous)
ATGCACTTCTTCTACATTTCCTTTGCTGCACTCTTGATATCATGGACTCC
ATGCCTAACGGAGAGCTTCTCGGTGCATTTCCGTTCTACGGCCACCCACC
GTTCCACGTCTCTTGGACGTTGCGACCTCGCACCTAGTATGACGTTGCGA
GGAGAGCGAAGTGCGGTGGATAGATTTGTCGGCGCGGCGTTGCTTGGGGG
CTCGCTGCTGGTGGCTGGGGTTGGGATTGTTTCTGGTGTTGATGTCGCGA
GAGCGGACGTTTCCATTAGTCCCAGATATGCACTTCTTCTACATTTCCTT
TGCTGCACTCTTGATATCATGGACTCCATGCCTAACGGAGAGCTTCTCGG
TGCATTTCCGTTCTACGGCCACCCACCGTTCCACGTCTCTTGGACGTTGC
GACCTCGCACCTAGTATGACGTTGCGAGGAGAGCGAAGTGCGGTGGATAG
ATTTGTCGGCGCGGCGTTGCTTGGGGGCTCGCTGCTGGTGGCTGGGGTTG
GGATTGTTTCTGGTGTTGATGTCGCGAGAGCGGACGTTTCCATTAGTCCC
AGATGTATCTCCGGCGAGGGTCCTCAGTGCGACGACCTGACAGAAGGAAG
CGAATTGATCAAGACCCTGCAGGCCAAGTCCGCGCAAAACAAGGAGAAGT
ACATTAGGCAAACTCTCGACACGTATAACGACCACAACTTCAAAGGTATC
TCCGGCGAGGGTCCTCAGTGCGACGACCTGACAGAAGGAAGCGAATTGAT
CAAGACCCTGCAGGCCAAGTCCGCGCAAAACAAGGAGAAGTACATTAGGC
AAACTCTCGACACGTATAACGACCACAACTTCAAAGCAGACTATTTCCGG
GCGGAGAACAAGCACATGGTACGTCACAAGCAGACTATTTCCGGGCGGAG
AACAAGCACATGGTACGTCACAAGGATGGTAAGTACGAGATTTTGACGAA
CGCAGACTACGTCGAGGCGGAGAGAGCGGGGAAAGTGAAGAACGACGTGT
TCTTGAACGAAGGGTGAGATGGTAAGTACGAGATTTTGACGAACGCAGAC
TACGTCGAGGCGGAGAGAGCGGGGAAAGTGAAGAACGACGTGTTCTTGAA
CGAAGGGTGA
back to top