mRNA_H-paniculata_contig1977.5031.1 (mRNA) Halopteris paniculata Hal_grac_a_UBK monoicous
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Overview
Homology
BLAST of mRNA_H-paniculata_contig1977.5031.1 vs. uniprot
Match: A0A498M2F0_LABRO (Retrovirus-related Pol poly from transposon TNT 1-94 n=1 Tax=Labeo rohita TaxID=84645 RepID=A0A498M2F0_LABRO) HSP 1 Score: 317 bits (813), Expect = 8.040e-94 Identity = 218/669 (32.59%), Postives = 333/669 (49.78%), Query Frame = 1
Query: 16 KANGLQMKRLRSKQGREFTGEEFRQFCAENSIKQEFSVAYTPQQNGVAERSWRTVFETTRSEMIIANMGCRYWVEAARAAVYCLNRASTRPHNGGLPHEKWHVTTPKLDHLRVFGCTAYVMFQSQQRRKLDDKTWLRVFLGHYEDSPSYRIYRPENKSVQLSRNVRFDEENFVTAHHGQLEHDGT--RDIEGLFSAPSVTPAVTRSRARGEETSRILKRARARENREENSGSAARVAKVEDTSNPTRAVSEEEPKCAAAALKNQEADKWRAAM-----TFVKTWTWESEDRGRLPVGWKAISTKWIIKRKLKEEGSVPRYKARLVAQSFSQVGGEDFFETSALVAHMSTLHTVFSLATKHDFELEGMGVDVAYLNAPMEEELFVKLPSEFFPFSRDIPFVRRLRKRPYDLKQSSRNWNNTLDDFLVGIGLQRSTTDPCL*FSRDEGGETDILVAIYVDYLVIARRHEK-VDKFKDNISWRFTMKDLGSLSRVLGIDVRRDRPNGTISISQGDYIREVLKRHVFDECRGVPTPVEERVEILASESADKPREPNPIGAVLGNSTEYRGMVGTLMCASTGTRPDIAYAVHQEARRMEDPCREDFR-----------------------------FVDADWAEDVEDRKSTTGYITKLNGGAISWCSRKQQLV 1911
K+ G Q+K LR+ G E+T EF+ F + I+ E +V TP+QNGVAER +T+ ET RS + A + ++W EA AVY NR+ T+ G P E W PK+DHLR+FGCT Y +R+KLD K + LG+ ++ YR+Y + V SR+V F+E N DG R +E P + + R E R+ K + G VA SNPT EPK L + + KW+ AM + W + LP G KA+ +KW+ K K+ +G+ R+KARLVAQ FSQ G D+ ET + V ++ T+ + A ++ +L M V A+LN ++EE++++ P F ++ V +L + Y LKQS R WN LD+ L +G ++T DPC+ + GE ++A+YVD +++A +K + + K ++ F +KD+G L+ LG+ + + G I + Q Y VLK+ + + V TPV+ +++ + +P +++ VG+L+ ST TRPDIAYAV+ AR P ++ + F DADWA D DRKS +GY+ +++G A+SW S+KQ V
Sbjct: 4 KSTGRQLKVLRTDNGGEYTSSEFQDFLKKEGIRHELTVPKTPEQNGVAERMNKTLMETVRSMLADAKLPQKFWAEALSTAVYLRNRSPTKSVKGMTPFEAWTGEKPKVDHLRIFGCTVYAHVPKDERKKLDPKAKKCILLGYGTETKGYRLYDSKLAKVFFSRDVIFNESNHAFEKEPVANEDGAVNRYVEFDCQEPDNEESPEQKVQRSE---RLRKPP-------DYYGEWVTVA-----SNPTT-----EPKTVKDVLSSPDKAKWKEAMEKEMESLYANNVWNLVE---LPKGRKAVGSKWVFKVKVDADGTFERHKARLVAQGFSQKFGSDYDETFSPVVRFESVRTIIAQAVQYGLKLHQMDVKTAFLNGELKEEVYMQQPEGFVVKGKEH-LVCKLNRSIYGLKQSPRCWNIVLDEQLKKMGFVQTTGDPCIYTAAT--GEM-FIIAVYVDDILLAGCSDKRMMEVKKMLAKHFEIKDMGELTHFLGVKIIQKPETGEIWMGQATYAENVLKKFGMENSKPVSTPVDINTKLVKHSDDSEVMDPK----------QFQSAVGSLLYLSTRTRPDIAYAVNNVARFCAKPTKQHWTAVKRIMRYLKGTLNLGLLYNKDKPKECIGFSDADWAGDQNDRKSMSGYMFQISGAAVSWRSKKQTCV 635
BLAST of mRNA_H-paniculata_contig1977.5031.1 vs. uniprot
Match: UPI001F004464 (DDE-type integrase/transposase/recombinase n=1 Tax=Corynebacterium parakroppenstedtii TaxID=2828363 RepID=UPI001F004464) HSP 1 Score: 322 bits (826), Expect = 1.330e-93 Identity = 221/683 (32.36%), Postives = 359/683 (52.56%), Query Frame = 1
Query: 10 IAKANGLQMKRLRSKQGREFTGEEFRQFCAENSIKQEFSVAYTPQQNGVAERSWRTVFETTRSEMIIANMGCRYWVEAARAAVYCLNRASTRPHNGGLPHEKWHVTTPKLDHLRVFGCTAYVMFQSQQRRKLDDKTWLRVFLGHYEDSPSYRIYRPENKSVQLSRNVRFDEE-----------NFVTAHHGQLEHDGTRDIEGLFSAPSVTPAVTRSRARGEETS-RILKRARARENREENSGSAARVAKVEDTSNPTRAV--SEEEPKCAAAALKNQEADKWRAAM-----TFVKTWTWESEDRGRLPVGWKAISTKWIIKRKLKEEGSVPRYKARLVAQSFSQVGGEDFFETSALVAHMSTLHTVFSLATKHDFELEGMGVDVAYLNAPMEEELFVKLPSEFFPFSRDIPFVRRLRKRPYDLKQSSRNWNNTLDDFLVGIGLQRSTTDPCL*FSRDEGGETDILVAIYVDYLVIARRHEK-VDKFKDNISWRFTMKDLGSLSRVLGIDVRRDRPNGTISISQGDYIREVLKRHVFDECRGVPTPVEERVEILASESADKPREPNPIGAVLGNSTEYRGMVGTLMCASTGTRPDIAYAVHQEARRMEDPCR--------------------------EDFRFV---DADWAEDVEDRKSTTGYITKLNGGAISWCSRKQQLV 1911
+ K +GL +K +RS +G EFT EF+ FC ++ I++ +V +PQQNGVAER RT+ + RS + N+ +W EA AVY LNR+ TR G P E W P + HLRVFG AY + R KLDDK+ +F+G+ +S Y++Y P+ ++ +SR+V FDEE N + + + +D++ + P +P V + + + R ++RAR+ + E+ E N T ++ EP A++++ KWR AM + K TWE LP G KAI KW+ K K +G + RYKARLVA+ +SQ G D+ E A VA + T+ + SLA ++ +++ M V A+LN ++EE++++ P + ++ V RL+K Y LKQ+ R WN+ +D +L G + + L +++ + G+ ++V +YVD L+ A +++ +D+FK +++ F M D+G ++ LGI+V++ I ISQ Y +E++K+ D+C V TPVE +++ + +K ++T ++ +VG+L T TRPDI YA +R ME+P D++ V D+DWA D++DRKSTTG++ + A +W S+KQ +V
Sbjct: 230 VEKESGLHIKAMRSDRGGEFTSREFQNFCEKHGIRRPLTVPRSPQQNGVAERKNRTILDMARSMLKSKNLPKEFWAEAVACAVYLLNRSPTRSVWGKTPQESWSGRKPGISHLRVFGSKAYAHVPDETRSKLDDKSKAFIFIGYDSNSKGYKLYNPDTNNLVISRDVEFDEEGEWDFSSHEDFNSIMPTEEEEQPTAEQDVQQEPTTPLTSPTVVQDASPPSFLNERSVERARSLGDIYED---------TERLENLTLLCLFADCEPVTFEEAVQSK---KWRDAMDEEIKSIEKNDTWELTS---LPKGHKAIGVKWVYKAKKNSKGEIERYKARLVAKGYSQRAGIDYDEVFAPVARLETVRLIISLAAQNKWKIHQMDVKSAFLNGVLDEEVYIQQPMGYKVKMQEDK-VLRLKKALYGLKQAPRAWNSRIDKYLQENGFAKCPHEHAL-YTKMKDGDI-LIVCLYVDDLIFAGNNQRMIDEFKQSMAKVFEMTDIGLMAYYLGIEVKQLEDG--IFISQEGYAKEIIKKFKMDDCNPVNTPVECGIKLSKHDEDEKV-----------DTTMFKSLVGSLRYL-TCTRPDILYATGLISRYMENPTTTHLKTARRILRYLKGTINFGLFYSTSNDYKLVGYSDSDWAGDIDDRKSTTGFVFFMGDTAFTWMSKKQPIV 880
BLAST of mRNA_H-paniculata_contig1977.5031.1 vs. uniprot
Match: A0A151R6U8_CAJCA (Retrovirus-related Pol polyprotein from transposon TNT 1-94 n=5 Tax=Cajanus cajan TaxID=3821 RepID=A0A151R6U8_CAJCA) HSP 1 Score: 326 bits (836), Expect = 1.740e-93 Identity = 219/676 (32.40%), Postives = 338/676 (50.00%), Query Frame = 1
Query: 25 GLQMKRLRSKQGREFTGEEFRQFCAENSIKQEFSVAYTPQQNGVAERSWRTVFETTRSEMIIANMGCRYWVEAARAAVYCLNRASTRPHNGGLPHEKWHVTTPKLDHLRVFGCTAYVMFQSQQRRKLDDKTWLRVFLGHYEDSPSYRIYRPENKSVQLSRNVRFDEENFVTAHHGQLEHDGTRDIEGLFSAPSVTPAVTRSRARGEETSRILKRARARENREENSGSAARVAKVEDTSNPT--------------RAVSEEEPKCAAAALKNQEADKWRAAM-----TFVKTWTWESEDRGRLPVGWKAISTKWIIKRKLKEEGSVPRYKARLVAQSFSQVGGEDFFETSALVAHMSTLHTVFSLATKHDFELEGMGVDVAYLNAPMEEELFVKLPSEFFPFSRDIPFVRRLRKRPYDLKQSSRNWNNTLDDFLVGIGLQRSTTDPCL*FSRDEGGETDILVAIYVDYLVIARRHEKVDKFKDNISWRFTMKDLGSLSRVLGIDVRRDRPNGTISISQGDYIREVLKRHVFDECRGVPTPVEERVEILASESADKPREPNPIGAVLGNSTEYRGMVGTLMCASTGTRPDIAYAVHQEARRMEDPCREDFR----------------------------FVDADWAEDVEDRKSTTGYITKLNGGAISWCSRKQQLV 1911
G ++K LR+ G E+ +F FC + IK++F+VA+TPQQNGVAER RT+ E TR+ + A + +W EA + A Y +NR+ + P E W+ L VFGC YVM+ SQ+R KLD K+ +FLG+ ++ YR++ P + V +SR+V F E T + E+D T S+ +S+ ++TS + +E E+N G R + T P+ E EP AL++ + +W AAM + TWE D LP G KAI KW+ K K V RY+ARLV + ++Q G DF E + V ++T+ V ++ + LE + V A+L+ ++EE+++ P F ++ V RL K Y LKQ+ R W D F++ +G R ++D C ++R + + IL+ D LV+ +++ + K ++ F MKDLG +++LG+ + RDR N I +SQ +Y+ +VL+R +C+ + TP+ ++ +S S E + V Y VG+LM A TRPDIA AV +R M DP RE + +VD+D+A D++ RKSTTGY+ L GGA+SW S+ Q +V
Sbjct: 491 GKRIKCLRTDNGGEYIDGDFLAFCKQEGIKRQFTVAHTPQQNGVAERMNRTLLERTRAMLRTAGLAKSFWAEAVKTACYLINRSPSTAIGLKTPMEMWNGKPSNYSSLHVFGCPVYVMYNSQERTKLDPKSRKCIFLGYADNVKGYRLWDPTARKVVVSRDVVFAE----TELQKEQENDST------IKDTSIVEIGGKSKE--DDTSEAEQEHDEQEPNEDNDGDVRRTTR--QTKKPSWHSDYVMASHDAYCLLTEEGEPSTFQEALRSSDVSQWMAAMHEEIEALHRNKTWELVD---LPKGRKAIGCKWVYKIKRDGNDQVERYRARLVVKGYAQKEGIDFNEIFSPVVRLTTIRVVLAMCAAFNLHLEQLDVKTAFLHGELQEEIYMLQPEGFKEQGKEN-LVCRLTKSLYGLKQAPRCWYKRFDSFIISLGYNRLSSDHCTYYNRFDDNDFIILLLYVDDMLVVGPNKDQIQELKAQLAREFDMKDLGPANKILGMQIHRDRKNRRIWLSQKNYLLKVLRRFNMQDCKPISTPLPVNYKLSSSMSPSNEAERMEMSRV-----PYASAVGSLMYAMICTRPDIAQAVGAVSRFMADPGREHWSIVKRILRYIKGTSDVALCFEGSEFFVRGYVDSDFAGDLDKRKSTTGYVFTLAGGAVSWLSKLQTVV 1143
BLAST of mRNA_H-paniculata_contig1977.5031.1 vs. uniprot
Match: A5CBM1_VITVI (Uncharacterized protein n=1 Tax=Vitis vinifera TaxID=29760 RepID=A5CBM1_VITVI) HSP 1 Score: 324 bits (831), Expect = 7.760e-93 Identity = 221/654 (33.79%), Postives = 338/654 (51.68%), Query Frame = 1
Query: 25 GLQMKRLRSKQGREFTGEEFRQFCAENSIKQEFSVAYTPQQNGVAERSWRTVFETTRSEMIIANMGCRYWVEAARAAVYCLNRASTRPHNGGLPHEKWHVTTPKLDHLRVFGCTAYVMFQSQQRRKLDDKTWLRVFLGHYEDSPSYRIYRPENKSVQLSRNVRFDEENFVTAHHGQLEHDGTRDIEGLFSAPSVTPAVTRSRAR--GEETSRILKRARARENREENSGSAARVAKVEDTSNPTRAVSEE-------------EPKCAAAALKNQEADKWRAAM-----TFVKTWTWESEDRGRLPVGWKAISTKWIIKRKLKEEGSVPRYKARLVAQSFSQVGGEDFFETSALVAHMSTLHTVFSLATKHDFELEGMGVDVAYLNAPMEEELFVKLPSEFFPFSRDIPFVRRLRKRPYDLKQSSRNWNNTLDDFLVGIGLQRSTTDPCL*FSRDEGGETDILVAIYVDYLVIARRH-EKVDKFKDNISWRFTMKDLGSLSRVLGIDVRRDRPNGTISISQGDYIREVLKRHVFDECRGVPTPVEERVEILASESADKPREPNPIGAVLGNSTEYRGMVGTLMCASTGTRPDIAYAVHQEARRMEDPCREDFR----FVDADWAEDVEDRKSTTGYITKLNGGAISWCSRKQQLV 1911
GL++K LRS G E+ F ++CA I+ E ++ TPQQNGVAER RT+ E RS + A + +W +A A Y +NR + P LP E W K HL+VFGC +YV S R KLD K+ + F+G+ ++ YR + +N+ + SRNV F+E+ + + D T +I+ S +T S + GEE +EN + V +V +S TR EP+C AL+++ + KW AM + + TWE + LPVG KA+ KW+ + K + +GS RYKARLV + F Q G D+ E + V MST+ V + + LE + V A+L+ +EE+L++ P F ++ V +LRK Y LKQ+ R W D+F+ IG +R D C + I++ +YVD ++I EK++ K +S +F MKDLG+ ++LG+ + RD+ NGT+ +SQ +Y+++VL R +E + V TP+ ++ +S E + + V Y +G+LM A TRPDIA+AV +R M P ++ + +VDAD+A D++ RKSTTG++ L G AISW S Q++V
Sbjct: 504 GLKVKCLRSDNGGEYIDGGFSEYCAAQGIRMEKTIPGTPQQNGVAERMNRTLNERARSMRLHAGLPKTFWADAVSTAAYLINRGPSVPMEFRLPEEVWSGKEVKFSHLKVFGCVSYVHIDSDARSKLDAKSKICFFIGYGDEKFGYRFWDEQNRKIIRSRNVIFNEQ-VMYKDRSTVTSDVT-EIDQKKSEFVNLDELTESTVQKGGEED---------KENVNSQVDLSTPVVEVRRSSRNTRPPQRYSPVLNYLLLTDGGEPECYDEALQDENSSKWELAMKDEMDSLLGNQTWELTE---LPVGKKALHNKWVYRIKNEHDGS-KRYKARLVVKGFQQKEGIDYTEIFSPVVKMSTIRLVLGMVAAENLHLEQLDVKTAFLHGDLEEDLYMIQPEGFIVQGQEN-LVCKLRKSLYGLKQAPRQWYKKFDNFMHRIGFKRCEADHCCYVKSFDNSY--IILLLYVDDMLIXGSDIEKINNLKKQLSKQFAMKDLGAAKQILGMRIIRDKANGTLKLSQSEYVKKVLSRFNMNEAKPVSTPLGSHFKLSKEQSPKTEEERDHMSKV-----PYASAIGSLMYAMVCTRPDIAHAVGVVSRFMSXPGKQHWEAVEGYVDADFAGDIDSRKSTTGFVFTLGGTAISWTSNLQKIV 1134
BLAST of mRNA_H-paniculata_contig1977.5031.1 vs. uniprot
Match: A0A438JDY0_VITVI (Retrovirus-related Pol polyprotein from transposon TNT 1-94 n=1 Tax=Vitis vinifera TaxID=29760 RepID=A0A438JDY0_VITVI) HSP 1 Score: 315 bits (806), Expect = 1.390e-92 Identity = 222/673 (32.99%), Postives = 340/673 (50.52%), Query Frame = 1
Query: 25 GLQMKRLRSKQGREFTGEEFRQFCAENSIKQEFSVAYTPQQNGVAERSWRTVFETTRSEMIIANMGCRYWVEAARAAVYCLNRASTRPHNGGLPHEKWHVTTPKLDHLRVFGCTAYVMFQSQQRRKLDDKTWLRVFLGHYEDSPSYRIYRPENKSVQLSRNVRFDEENFVTAHHGQLEHDGTRDIEGLFSAPSV---TPAVTRS--RARGEE-----TSRILKRARARENREENSGSAARVAKVEDTSNPTRAVSEEEPKCAAAALKNQEADKWRAAM-----TFVKTWTWESEDRGRLPVGWKAISTKWIIKRKLKEEGSVPRYKARLVAQSFSQVGGEDFFETSALVAHMSTLHTVFSLATKHDFELEGMGVDVAYLNAPMEEELFVKLPSEFFPFSRDIPFVRRLRKRPYDLKQSSRNWNNTLDDFLVGIGLQRSTTDPCL*FSRDEGGETDILVAIYVDYLVIARRH-EKVDKFKDNISWRFTMKDLGSLSRVLGIDVRRDRPNGTISISQGDYIREVLKRHVFDECRGVPTPVEERVEILASESADKPREPNPIGAVLGNSTEYRGMVGTLMCASTGTRPDIAYAVHQEARRMEDPCREDFR----------------------------FVDADWAEDVEDRKSTTGYITKLNGGAISWCSRKQQLV 1911
GL++K LRS G E+ F ++CA I+ E ++ TPQQNGVAER RT+ E RS + A + +W +A A Y +NR + P LP E W K HL+VFGC +YV S R KLD K+ + F+G+ ++ YR + +N+ + SRNV F+E+ + G+L T D+ + S +T S + RGEE S++ R E R +S + + N EP+C AL+++ + KW AM + + TWE + LPVG KA+ KW+ + + +GS RYKARLV + F Q G D+ E + V MST+ V + + LE + V A+L+ +EE+L++ P F ++ V +LRK Y LKQ+ R W D+F+ IG +R D C + I++ +YVD ++IA EK++ K +S +F MKDLG+ ++LG+ + RD+ NGT+ +SQ +Y+++VL R +E + V TP+ ++ +S E + + V Y +G+LM A TRPDIA+AV +R M P ++ + +VDAD+A D++ RKSTTG++ L G AISW S Q++V
Sbjct: 7 GLKVKCLRSDNGGEYIDGGFNEYCAAQGIRMEKTIPGTPQQNGVAERMNRTLNERARSMRLHAGLPKTFWADAVSTAAYLINRGPSVPMEFRLPEEVWSGKEVKFSHLKVFGCVSYVHIDSDARSKLDAKSKICFFIGYGDEKFGYRFWDEQNRKIIRSRNVIFNEQ---VMYKGRLTV--TSDVTEIDQKKSEFVNLDELTESTVQKRGEEDKENVNSKVDLRTPVVEVRR-SSRNIRPPQRYSPVLNYLLLTDGGEPECYNEALQDENSSKWELAMKDEMDSLLGNQTWELTE---LPVGKKALHNKWVYRINNEHDGS-KRYKARLVVKGFQQKEGIDYTEIFSPVVKMSTIRLVLGMVAVENLHLEQLDVKTAFLHGDLEEDLYMIQPEGFIVQGQEN-LVCKLRKSLYGLKQAPRQWYKKFDNFMHRIGFKRCEADHCCYVKSFDNSY--IILLLYVDDMLIAGSDIEKINNLKKQLSKQFAMKDLGAAKQILGMRIIRDKANGTLKLSQSEYVKKVLSRFNMNEAKPVSTPLGSHFKLSKEQSPKTEEERDHMSKV-----PYASAIGSLMYAMVCTRPDIAHAVGVVSRFMSRPGKQHWEAVKWILRYLKGSLDTCLCFTGASLKLQGYVDADFAGDIDSRKSTTGFVFTLGGTAISWTSNLQKIV 661
BLAST of mRNA_H-paniculata_contig1977.5031.1 vs. uniprot
Match: A0A5B7BAK4_DAVIN (Uncharacterized protein n=1 Tax=Davidia involucrata TaxID=16924 RepID=A0A5B7BAK4_DAVIN) HSP 1 Score: 321 bits (823), Expect = 1.690e-91 Identity = 218/685 (31.82%), Postives = 340/685 (49.64%), Query Frame = 1
Query: 10 IAKANGLQMKRLRSKQGREFTGEEFRQFCAENSIKQEFSVAYTPQQNGVAERSWRTVFETTRSEMIIANMGCRYWVEAARAAVYCLNRASTRPHNGGLPHEKWHVTTPKLDHLRVFGCTAYVMFQSQQRRKLDDKTWLRVFLGHYEDSPSYRIYRPENKSVQLSRNVRFDEENFVTAHHGQLEHDGTRDIE--GLFSAPSVTPAVTRSRARGEETSRI-----------LKRARARENREENSGSAARVAKVEDTSNPTR---AVSEE-EPKCAAAALKNQEADKWRAAM-----TFVKTWTWESEDRGRLPVGWKAISTKWIIKRKLKEEGSVPRYKARLVAQSFSQVGGEDFFETSALVAHMSTLHTVFSLATKHDFELEGMGVDVAYLNAPMEEELFVKLPSEFFPFSRDIPFVRRLRKRPYDLKQSSRNWNNTLDDFLVGIGLQRSTTDPCL*FSRDEGGETDILVAIYVDYLVIARRH-EKVDKFKDNISWRFTMKDLGSLSRVLGIDVRRDRPNGTISISQGDYIREVLKRHVFDECRGVPTPVEERVEILASESADKPREPNPIGAVLGNSTEYRGMVGTLMCASTGTRPDIAYAVHQEARRMEDPCREDFR----------------------------FVDADWAEDVEDRKSTTGYITKLNGGAISWCSRKQQLV 1911
+ GL++K LRS G E+T +EF++FCA N I+ E ++ TPQQNGVAER RT+ E RS I A + +W +A A Y +NR + P + GLP E W L HL+VFGC +YV S R KLD K+ F+G+ D YR + +N+ + SR+V F+E+ G ++ E G + + SR + + I L+R ++RV+K +P+ +S+ EP+C AL+ ++ KW +AM + + TW+ + LP G KA+ KW+ + K + +GS RYKARLV + F Q G D+ E + V M+T+ V + + LE + V A+L+ +EE++++K P F ++ + +L K Y LKQ+ R W D F+ G R D C R + I++ +YVD ++IA +++ K+ +S +F MKDLG+ ++LG+ + RDR GT+ +SQ +Y++ V+ R + + V TP+ + +S E + V Y VG+LM A TRPDIA+AV +R M +P ++ + +VD+D A DV++RKSTTGY+ L G A+SW SR Q++V
Sbjct: 530 VENETGLKIKCLRSDNGGEYTDKEFKEFCATNGIRMEKTIPKTPQQNGVAERMNRTLNERGRSMRIHAGLPKMFWADAVNTAAYLINRGPSVPLDDGLPEEAWSGKEVNLSHLKVFGCVSYVHIDSDARSKLDPKSKKCTFIGYGTDEFGYRFWDDQNRKITRSRDVIFNEKVLYKDRSGAESNNADTHAEKTGFVELEEPSESEVHSRVQNNPENIIPQVEPVTPATGLRR-------------SSRVSKAPQCYSPSLYYLLLSDSGEPECYDEALQVGDSAKWESAMQDEMDSLMSNQTWKLTE---LPKGKKALHNKWVYRIKEEHDGS-KRYKARLVVKGFQQKEGVDYTEIFSPVVKMTTIRLVLGIVAAENLHLEQLDVKTAFLHGDLEEDIYMKQPQGFTAPGKE-GLICKLAKSLYGLKQAPRQWYKKFDGFMCTNGFTRCQADHCCYMKRFDNDY--IILLLYVDDMLIAGSSIQEIKNLKNQLSKQFAMKDLGAAKQILGMRISRDRTAGTLKLSQAEYVKRVISRFSMQDAKPVSTPLASHFRLTKDQSPKTEEEQGYMQRV-----PYASAVGSLMYAMVCTRPDIAHAVGVVSRFMSNPGKKHWEAIKWILRYLKGTTDTALCFDEADMVLQGYVDSDLAGDVDNRKSTTGYVFTLGGTAVSWVSRLQKIV 1189
BLAST of mRNA_H-paniculata_contig1977.5031.1 vs. uniprot
Match: A0A6S7H8C9_PARCT (Retrovirus-related Pol poly from transposon TNT 1-94 n=1 Tax=Paramuricea clavata TaxID=317549 RepID=A0A6S7H8C9_PARCT) HSP 1 Score: 313 bits (801), Expect = 6.810e-91 Identity = 220/698 (31.52%), Postives = 340/698 (48.71%), Query Frame = 1
Query: 25 GLQMKRLRSKQGREFTGEEFRQFCAENSIKQEFSVAYTPQQNGVAERSWRTVFETTRSEMIIANMGCRYWVEAARAAVYCLNRASTRPHNGGLPHEKWHVTTPKLDHLRVFGCTAYVMFQSQQRRKLDDKTWLRVFLGHYEDSPSYRIYRPENKSVQLSRNVRFDEENF---------------VTAHHGQLEHDGTRDIEGLFSAPSVT--------PAVTRSRARGEETSRILKRARARENREENSGSAARVAKVEDTSNPTRAVS--EEEPKCAAAALKNQEADKWRAAM-----TFVKTWTWESEDRGRLPVGWKAISTKWIIKRKLKEEGSVPRYKARLVAQSFSQVGGEDFFETSALVAHMSTLHTVFSLATKHDFELEGMGVDVAYLNAPMEEELFVKLPSEFFPFSRDIP-FVRRLRKRPYDLKQSSRNWNNTLDDFLVGIGLQRSTTDPCL*---FSRDEGGETDILVAIYVDYLV-IARRHEKVDKFKDNISWRFTMKDLGSLSRVLGIDVRRDRPNGTISISQGDYIREVLKRHVFDECRGVPTPVEERVEILASESADKPREPNPIGAVLGNSTEYRGMVGTLMCASTGTRPDIAYAVHQEARRMEDPCRED----------------------------------FRFVDADWAEDVEDRKSTTGYITKLNGGAISWCSRKQQLV 1911
GL++K LR+ G E+ +F ++C I ++S YTPQQNGV+ER RT+ E+ +S + ANM +W EA AVY NR+ T N P+E W P + +L+VFG ++ S RRKLD ++ VF+G+ ++ Y++Y E+K+ S++V F E F V ++H+ D E P+V PAV S EE+ +K+ EN E A D N T +++ EEP+ + AL A KW+ A+ + + TWE P G I +KW++K K +G+V R+KARLVAQ +SQ G ++ E + VA S++ T+ +LA KH+ E+ M V A+LN +E ++++ P F ++ P +V +L+K Y LKQS+R WN TLD FL G ++S D C+ + D G + +++A+YVD ++ I+ ++ KD + F M D G + +LG+ ++RDR T+ ISQ Y+ VL R C+ + TP+E E + Y+ +G L ST TRPDI+ AV + M +P +E + + DA+WA DV+ R+ST+GY+ K+ +SWCS+KQ V
Sbjct: 97 GLKVKTLRTDNGGEYVSNDFSKYCVNKGIVHQYSNPYTPQQNGVSERLNRTLMESAKSMIFYANMPINFWAEAVNTAVYLHNRSPTTSLNMKTPYEVWFSKKPDVSNLKVFGSVCFIHTPSNLRRKLDPRSRKAVFIGYPLNTKGYKLYDIESKNFVRSKDVGFYENKFHDFKVVTKELIIREDVPEEKLSVDHEQHHDAEDQVPVPTVPDIEDEENLPAVGESY---EES--FMKQV---ENLETKRQRKAPKKFSPDECNITESLTAENEEPQSISEALNGANASKWKQALKEEYNSLISNETWELVPP---PEGCNVIGSKWVMKIKRDADGNVDRHKARLVAQGYSQTPGINYEEVFSPVARHSSIRTLLALANKHNLEIHQMDVKTAFLNGYIEHDIYMSQPDGFV--DQEHPEYVCKLKKSLYGLKQSARCWNQTLDSFLTKNGYRKSNADNCIYVKSITNDNGFISFVILAVYVDDIIPISNDINMLNAEKDLLCKHFEMTDQGEIHFILGMTIKRDRETKTLFISQQKYLESVLDRFGMANCKPISTPLETTYHKRTEEEEGF------------DKNLYQQAIGCLTYISTATRPDISAAVSILSSYMSNPSKEHRNGVKRLLRYIKGTLNFGLKFTTSENDDENGDKLYGYSDANWAGDVDSRRSTSGYVFKVANSTVSWCSKKQASV 769
BLAST of mRNA_H-paniculata_contig1977.5031.1 vs. uniprot
Match: W8AK63_CERCA (Retrovirus-related Pol polyprotein from transposon TNT 1-94 (Fragment) n=2 Tax=Ceratitis capitata TaxID=7213 RepID=W8AK63_CERCA) HSP 1 Score: 308 bits (788), Expect = 1.960e-90 Identity = 221/664 (33.28%), Postives = 332/664 (50.00%), Query Frame = 1
Query: 34 MKRLRSKQGREFTGEEFRQFCAENSIKQEFSVAYTPQQNGVAERSWRTVFETTRSEMIIANMGCRYWVEAARAAVYCLNRASTRPHNGGLPHEKWHVTTPKLDHLRVFGCTAYVMFQSQQRRKLDDKTWLRVFLGHYEDSPSYRIYRPENKSVQLSRNVRFDEENFVTAHHGQLEHD-GTRDIEGLFSAPSVTPAVTRSRARGEETSRILKRARARENREE--NSGSAARVAKVEDTSNPTRAVSEEEPKCAAAALKNQEADKWRAAM-----TFVKTWTWESEDRGRLPVGWKAISTKWIIKRKLKEEGSVPRYKARLVAQSFSQVGGEDFFETSALVAHMSTLHTVFSLATKHDFELEGMGVDVAYLNAPMEEELFVKLPSEFFPFSRDIPF-VRRLRKRPYDLKQSSRNWNNTLDDFLVGIGLQRSTTDPCL*FSRDEGGETDILVAIYVDYLVIARRHEK-VDKFKDNISWRFTMKDLGSLSRVLGIDVRRDRPNGTISISQGDYIREVLKRHVFDECRGVPTPVEERVEILASESADKPREPNPIGAVLGNSTEYRGMVGTLMCASTGTRPDIAYAVHQEARRMEDPCREDFR----------------------------FVDADWAEDVEDRKSTTGYITKLNGGAISWCSRKQQLV 1911
+K LRS GRE+ + F F EN I ++ +V YTPQQNGVAER+ RT+ E RS ++ + +G +W EA A Y NR+ T+ P+E W P + HL+VFG A + ++RK K V +G+ + S +YR+Y P +K V + R+V F + +V H Q +D T D E + + P++ + E + L+ R R R +G R K N +A E P + A+ ++ +W +AM VK TW D LP G K I KW+ K +GSV R+K+RLVA+ SQ G +F ET + V +T+ V +LA +++ L + V AYLN+ ++ +++VK P F + P V +L K Y LKQS R WN L+ L+ +G ++PC+ ++++E + +I +A+YVD ++IA K ++ K I+ F + D G LGI + RD G I+ISQ YI ++LK + +EC+ V TP+ E+ S DK + N+TEY+ ++G LM + TRPDI ++V + A+R DP E FVDADW D DRKS +G G SW S+KQ +V
Sbjct: 18 IKILRSDNGREYLSKNFENFLKENGIVRQLTVPYTPQQNGVAERANRTLVEMARSMIVHSGLGECFWAEAVATAAYLQNRSVTKSLANRTPYEAWTSRKPNVSHLKVFGQLA-IAIDKTEKRKFQPKGKKMVMVGYSDVSKAYRLYDPASKKVIVCRDVIFIDGAYVP--HEQNPNDIVTFDAEDIVN--EAEPSIAEDTSGDYEVNSDLQPTRVRRGRPAFVRTGRRGRPRKRRHFLNMMKAADVEIPITVSEAMNSKYVKQWTSAMQKEFDALVKRNTWSLVD---LPAGEKPIGCKWVYSVKQNSDGSVQRFKSRLVAKGCSQQFGINFNETFSPVVRYATIRLVIALACEYNLHLHQLDVSSAYLNSELQYDVYVKQPENFV--NEQFPNRVLKLNKALYGLKQSGREWNEKLNSVLIKMGFMPCVSEPCV-YTKNEEDKYNI-IAVYVDDILIASSSLKDLNNIKARIAKEFDIVDGGPAKYFLGIQIERDGDVGNIAISQRQYIYDLLKHNGMEECKAVSTPL----EVGFQTSCDKDE------CIKVNTTEYQSLIGALMYLAISTRPDILHSVSKLAQRNTDPHLEHKTAAKRILRYLKGTAELKLHYKKTNRLVECFVDADWGGDASDRKSYSGSAFVAAGAVTSWESKKQSIV 659
BLAST of mRNA_H-paniculata_contig1977.5031.1 vs. uniprot
Match: A0A438FRF7_VITVI (Retrovirus-related Pol polyprotein from transposon TNT 1-94 n=3 Tax=Vitis vinifera TaxID=29760 RepID=A0A438FRF7_VITVI) HSP 1 Score: 315 bits (808), Expect = 8.110e-90 Identity = 221/678 (32.60%), Postives = 338/678 (49.85%), Query Frame = 1
Query: 25 GLQMKRLRSKQGREFTGEEFRQFCAENSIKQEFSVAYTPQQNGVAERSWRTVFETTRSEMIIANMGCRYWVEAARAAVYCLNRASTRPHNGGLPHEKWHVTTPKLDHLRVFGCTAYVMFQSQQRRKLDDKTWLRVFLGHYEDSPSYRIYRPENKSVQLSRNVRFDEENFVTAHHGQLEHDGTRDIEGLFSAPSVTPAVTRSRAR--GEETSRILKRARARENREENSGSAARVAKVEDTSNPTRAVSEE-------------EPKCAAAALKNQEADKWRAAM-----TFVKTWTWESEDRGRLPVGWKAISTKWIIKRKLKEEGSVPRYKARLVAQSFSQVGGEDFFETSALVAHMSTLHTVFSLATKHDFELEGMGVDVAYLNAPMEEELFVKLPSEFFPFSRDIPFVRRLRKRPYDLKQSSRNWNNTLDDFLVGIGLQRSTTDPCL*FSRDEGGETDILVAIYVDYLVIARRH-EKVDKFKDNISWRFTMKDLGSLSRVLGIDVRRDRPNGTISISQGDYIREVLKRHVFDECRGVPTPVEERVEILASESADKPREPNPIGAVLGNSTEYRGMVGTLMCASTGTRPDIAYAVHQEARRMEDPCREDFR----------------------------FVDADWAEDVEDRKSTTGYITKLNGGAISWCSRKQQLV 1911
GL++K LRS G E+ F ++CA I+ E ++ TPQQNGVAER RT+ E RS + A + +W +A A Y +NR + P LP E W K HL+VFGC +YV R KLD K+ + F+ + ++ YR + +N+ + SRNV F+E+ + + D T +I+ S +T+S + GEE +EN + V +V +S TR EP+C AL+++ + KW AM + + TWE + LPVG KA+ KW+ K K + +GS RYKARLV + F Q G D+ E + V MST+ V + + LE + V A+L+ +EE+L++ P F ++ V +LRK Y LKQ+ R W D+F+ IG +R D C F + I++ +YVD ++IA EK++ K +S +F MKDLG+ ++LG+ + RD+ NGT+ +SQ +Y+++VL R +E + V TP+ ++ +S E + + V Y +G+LM A TRPDIA+ V +R M P ++ + +VDAD+A D++ RKSTTG++ L G AISW S Q++V
Sbjct: 442 GLKVKCLRSDNGGEYIDAGFSEYCAAQGIRMEKTIPGTPQQNGVAERMNRTLNERARSMRLHAGLPKTFWADAVSTAAYLINRGPSVPMEFRLPEEVWSGKEVKFSHLKVFGCISYVHIDFDARSKLDAKSKICFFISYGDEKFGYRFWDEQNRKIIRSRNVIFNEQ-VMYKDRSSVVSDVT-EIDQKKSEFVNLDELTKSTVQKGGEED---------KENVNSQVDLSTPVVEVRRSSRNTRPPQRYSPVLNYLLLTDGGEPECYDEALQDENSSKWELAMKDEMDSLLGNQTWELTE---LPVGKKALHNKWVYKIKNEHDGS-KRYKARLVVKGFQQKEGIDYTEIFSPVVKMSTIRLVLGMVAAENLHLEQLDVKTAFLHGDLEEDLYMIQPEGFIVQGQEN-LVCKLRKSLYGLKQAPRQWYKKFDNFMHRIGFKRCEADHCCYFKSFDNSY--IILLLYVDDMLIAGSDIEKINNLKKQLSKQFAMKDLGAAKQILGMRIIRDKANGTLKLSQSEYVKKVLSRFNMNEAKPVSTPLGSHFKLSKEQSPKTEEERDHMSKV-----PYASAIGSLMYAMVCTRPDIAHTVGVVSRFMSRPGKQHWEAVKWILRYLKGSLDTCLCFTGASLKLQGYVDADFAGDIDSRKSTTGFVFTLGGTAISWASNLQKIV 1096
BLAST of mRNA_H-paniculata_contig1977.5031.1 vs. uniprot
Match: A0A151T355_CAJCA (Retrovirus-related Pol polyprotein from transposon TNT 1-94 n=2 Tax=Cajanus cajan TaxID=3821 RepID=A0A151T355_CAJCA) HSP 1 Score: 316 bits (809), Expect = 9.530e-90 Identity = 214/678 (31.56%), Postives = 332/678 (48.97%), Query Frame = 1
Query: 10 IAKANGLQMKRLRSKQGREFTGEEFRQFCAENSIKQEFSVAYTPQQNGVAERSWRTVFETTRSEMIIANMGCRYWVEAARAAVYCLNRASTRPHNGGLPHEKWHVTTPKLDHLRVFGCTAYVMFQSQQRRKLDDKTWLRVFLGHYEDSPSYRIYRPENKSVQLSRNVRFDEENFVTAHHGQLEHDGTRDIEGLFSAPSVTPAVTRSRARGEETSRILKRARARENREENSGSAARVAKVEDTSNP---TRAVSEEEPKCAAAALKNQE------ADKWRAAMT-----FVKTWTWESEDRGRLPVGWKAISTKWIIKRKLKEEGSVPRYKARLVAQSFSQVGGEDFFETSALVAHMSTLHTVFSLATKHDFELEGMGVDVAYLNAPMEEELFVKLPSEFFPFSRDIPFVRRLRKRPYDLKQSSRNWNNTLDDFLVGIGLQRSTTDPCL*FSRDEGGETDILVAIYVD-YLVIARRHEKVDKFKDNISWRFTMKDLGSLSRVLGIDVRRDRPNGTISISQGDYIREVLKRHVFDECRGVPTPVEERVEILASESADKPREPNPIGAVLGNSTEYRGMVGTLMCASTGTRPDIAYAVHQEARRMEDPCREDFR-----------------------------FVDADWAEDVEDRKSTTGYITKLNGGAISWCSRKQQLV 1911
+ GLQ+KRLRS G E+T EF++FC + I+ + +V YTPQQNGV+ER RTV E R + + +W EA +VY LN T+ G P E WH TP ++HL+VFGC Y + +R KLD K+ + +FLG+ S YRIY P K + +SRNV+FDE + + E R +E + + EE + ++D P TR ++E +C AAL+ +E + WR AM K TW+ DR P+ K I KW+ + KL +GSV + KARLV + + Q G DF +T A VA T+ + +LA K +++ V A+LN +EE+++V P E F V +L K Y LKQ+ R W +D++L+ G +RS + L R + E +++++YVD LVI + + +FK ++ F M DLG ++ LG+++ + + I ISQ Y+ E+LK+ ++C+ V TP+ ++ +++ K + A L YR ++G+L+ S TRPDI +A +R M P + + + D+DWA ++D KST+GY+ G +W S+KQ++V
Sbjct: 510 VENETGLQVKRLRSDNGTEYTAGEFKKFCEQVGIQHQLTVPYTPQQNGVSERKNRTVMEMARCLLFEKGLPKTFWAEAVNTSVYLLNLLPTKALKGNTPFEAWHGRTPSVEHLKVFGCVCYALVPEVKRDKLDQKSEVGIFLGYSSYSKGYRIYNPATKKILVSRNVKFDELSRWNWEKSKAEASNKRQLE--------VDNLQEQNSESEEQN------------------------LDDDDFPVRGTRDLAEIYERCNVAALEPKEYAEAAELEGWRVAMQEEMNMIEKNNTWQLVDR---PINQKVIGLKWVYRTKLNYDGSVNKLKARLVVKGYHQQYGVDFLDTFAPVARHDTIRMLVALAAKFGWKIYHFDVKSAFLNGFLEEDIYVDQP-EGFQVKGSENKVYKLHKALYGLKQAPRAWYTRIDNYLLQKGFERSENEATLYVKRSQN-EVKLIISLYVDDMLVIGSDFDSLRQFKHDMENEFEMSDLGQMNYFLGMEIYQC--DAGIFISQRKYVLEILKKFHMEKCKPVDTPLVINEKLSLNDAIAK------VDASL-----YRSLIGSLLYLSA-TRPDIMFAASLLSRFMHSPSQAHYGAAKRVLRYLKGTTDYGLWFLQNESGELQGYADSDWAGSIDDSKSTSGYVFSFGSGVFTWNSKKQEVV 1136 The following BLAST results are available for this feature:
BLAST of mRNA_H-paniculata_contig1977.5031.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 vs UniRef90) Total hits: 25
Pagesback to topAlignments
The following features are aligned
Analyses
This mRNA is derived from or has results from the following analyses
Properties
Relationships
The following UTR feature(s) are a part of this mRNA:
The following CDS feature(s) are a part of this mRNA:
The following polypeptide feature(s) derives from this mRNA:
Sequences
The following sequences are available for this feature:
protein sequence of mRNA_H-paniculata_contig1977.5031.1 >prot_H-paniculata_contig1977.5031.1 ID=prot_H-paniculata_contig1977.5031.1|Name=mRNA_H-paniculata_contig1977.5031.1|organism=Halopteris paniculata Hal_grac_a_UBK monoicous|type=polypeptide|length=427bp MKRLRSKQGREFTGEEFRQFCAENSIKQEFSVAYTPQQNGVAERSWRTVFback to top mRNA from alignment at H-paniculata_contig1977:4564..7142+ Legend: UTRpolypeptideCDS Hold the cursor over a type above to highlight its positions in the sequence below.>mRNA_H-paniculata_contig1977.5031.1 ID=mRNA_H-paniculata_contig1977.5031.1|Name=mRNA_H-paniculata_contig1977.5031.1|organism=Halopteris paniculata Hal_grac_a_UBK monoicous|type=mRNA|length=2579bp|location=Sequence derived from alignment at H-paniculata_contig1977:4564..7142+ (Halopteris paniculata Hal_grac_a_UBK monoicous)back to top Coding sequence (CDS) from alignment at H-paniculata_contig1977:4564..7142+ >mRNA_H-paniculata_contig1977.5031.1 ID=mRNA_H-paniculata_contig1977.5031.1|Name=mRNA_H-paniculata_contig1977.5031.1|organism=Halopteris paniculata Hal_grac_a_UBK monoicous|type=CDS|length=2562bp|location=Sequence derived from alignment at H-paniculata_contig1977:4564..7142+ (Halopteris paniculata Hal_grac_a_UBK monoicous)back to top |